RchiOBHm_Chr2g0099291

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003319
Physical Location & Seq
Reverse (-)
11524211 .. 11525692
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47401

Sequence Viewer

Length: 924 bp
ATGCTCATGCGAACTCCATTTTCCTATTACCTCAGTCTCATTTTTCTCATCATCACCAAAGGGGTATCAGGAGCTACATTCACCTTCGTAAACAAATGTGACTTCACGGTATGGCCAGGAATTCTAGCCAGCGCCGGTAGTCCTAAGCTGGACAGCACCGGCTTTGAGCTCACCAAAGGCGGCTCCCGCACCTTCCAAGCTCCAACTGGCTGGTCGGGCCGCTTCTGGGCCCGAACCCGCTGCAACTTCGACGCATCCGGCCTTGGCTCGTGTGCCACGGCCGATTGCGGTTCGGGACTGGAGTGCAACGGAGCGGGAGCCGCTCCACCTGCCACCCTAGCCGAGTTCACGCTCGGCTCCGGCGGCACGCTGGATTTTTATGACGTCAGCCTGGTTGATGGTTATAACTTGCCTATGATCGTGGAGGGGAGTGGGGGATCAGGTACGTGTGCCACCACCGGGTGTGCGTCGGACCTCAACCGGAGTTGTCCGAATGAGCTCAAGGTCGTCGACGGCGACGCCTGTAAGAGCGCGTGCGACGCGTTTGGGACGCCGGAGTATTGTTGTAACGGCGCGTATGCTTCACCTGACACATGCAAGCCGTCCATGTACTCGCAGGTGTTTAAGTCGGCTTGTCCCAAGTCGTATAGCTACGCGTATGATGATGCCTCGAGTACGTTTACATGTACCGGGGCGGATTATACAATCACATTTTGTGCTTCACTTCTTCCTAGTGTAAAGTCCGCAACAAATTCTTCTCCACAAATATCAGGTACTGGGTCAGGGTCGGAATCGGAAGGCGGCACGTCATTGCTAGCAAGTTTGGCAACCGGAGACTCAACTAAAACCCATTCTTCAATTGCTTTCCACAGTGTGTTGATTTTGGTTGTCTCCTTGGCTCTCTCATTTTTACGATTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

307

Amino Acids

31.7

Weight (kDa)

4.89

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 239 3.1e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AarI CACCTGC 2 cut(s) 337, 607
AatII GACGTC 1 cut(s) 387
Acc36I ACCTGC 2 cut(s) 337, 607
AccBSI CCGCTC 2 cut(s) 314, 323
AccI GTMKAC 1 cut(s) 510
AccII CGCG 4 cut(s) 533, 542, 575, 656
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 2 cut(s) 113, 279
AcsI RAATTY 2 cut(s) 120, 751
AcyI GRCGYC 3 cut(s) 384, 519, 551
AdeI CACNNNGTG 2 cut(s) 462, 874
AfaI GTAC 5 cut(s) 445, 611, 676, 688, 775
AfiI CCNNNNNNNGG 2 cut(s) 226, 459
AflIII ACRYGT 4 cut(s) 446, 540, 654, 683
AgsI TTSAA 1 cut(s) 858
AjiI CACGTC 1 cut(s) 807
AjnI CCWGG 2 cut(s) 115, 390
AluBI AGCT 6 cut(s) 74, 148, 169, 200, 499, 651
AluI AGCT 6 cut(s) 74, 148, 169, 200, 499, 651
Alw21I GWGCWC 2 cut(s) 171, 501
Alw26I GTCTC 3 cut(s) 41, 828, 895
AlwI GGATC 1 cut(s) 445
AlwNI CAGNNNCTG 1 cut(s) 776
Ama87I CYCGRG 1 cut(s) 670
AoxI GGCC 5 cut(s) 113, 217, 228, 259, 279
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 120, 751
AspLEI GCGC 3 cut(s) 134, 533, 575
AspS9I GGNCC 4 cut(s) 217, 228, 229, 472
AsuC2I CCSGG 2 cut(s) 460, 691
AsuHPI GGTGA 4 cut(s) 46, 73, 163, 576
AsuNHI GCTAGC 1 cut(s) 814
AvaI CYCGRG 1 cut(s) 670
AvaII GGWCC 1 cut(s) 472
BaeGI GKGCMC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 115
BanII GRGCYC 3 cut(s) 171, 232, 501
BauI CACGAG 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 171, 501
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 392
BceAI ACGGC 4 cut(s) 294, 529, 586, 586
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 2 cut(s) 117, 392
BcnI CCSGG 2 cut(s) 460, 691
BcoDI GTCTC 3 cut(s) 41, 828, 895
BfaI CTAG 4 cut(s) 125, 338, 732, 815
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 2 cut(s) 337, 607
BisI GCNGC 6 cut(s) 181, 220, 241, 321, 364, 802
BlsI GCNGC 6 cut(s) 182, 221, 242, 322, 365, 803
Bme1390I CCNGG 4 cut(s) 117, 392, 460, 691
Bme18I GGWCC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 670
BmgBI CACGTC 1 cut(s) 807
BmgT120I GGNCC 4 cut(s) 217, 228, 229, 472
BmiI GGNNCC 4 cut(s) 184, 230, 319, 358
BmrFI CCNGG 4 cut(s) 117, 392, 460, 691
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 2 cut(s) 263, 655
BmtI GCTAGC 1 cut(s) 818
BmuI ACTGGG 1 cut(s) 786
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 460, 691
BsaAI YACGTR 1 cut(s) 447
BsaHI GRCGYC 3 cut(s) 384, 519, 551
BsaJI CCNNGG 4 cut(s) 262, 276, 690, 894
BsaWI WCCGGW 2 cut(s) 480, 830
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 459
Bse118I RCCGGY 2 cut(s) 134, 158
Bse1I ACTGG 3 cut(s) 211, 303, 781
Bse3DI GCAATG 1 cut(s) 809
BseBI CCWGG 2 cut(s) 117, 392
BseDI CCNNGG 4 cut(s) 262, 276, 690, 894
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 226, 459
BseMI GCAATG 1 cut(s) 809
BseMII CTCAG 1 cut(s) 46
BseNI ACTGG 3 cut(s) 211, 303, 781
BseSI GKGCMC 1 cut(s) 232
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 227
Bsh1236I CGCG 4 cut(s) 533, 542, 575, 656
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 5 cut(s) 115, 219, 230, 261, 281
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 171, 501
BsiHKCI CYCGRG 1 cut(s) 670
BsiSI CCGG 9 cut(s) 135, 159, 258, 360, 459, 481, 554, 690, 831
BslFI GGGAC 3 cut(s) 309, 562, 621
BslI CCNNNNNNNGG 2 cut(s) 226, 459
BsmAI GTCTC 3 cut(s) 41, 828, 895
BsmFI GGGAC 3 cut(s) 309, 562, 621
BsnI GGCC 5 cut(s) 115, 219, 230, 261, 281
BsoBI CYCGRG 1 cut(s) 670
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 3 cut(s) 171, 232, 501
Bsp143I GATC 2 cut(s) 417, 437
BspANI GGCC 5 cut(s) 115, 219, 230, 261, 281
BspCNI CTCAG 1 cut(s) 45
BspFNI CGCG 4 cut(s) 533, 542, 575, 656
BspLI GGNNCC 4 cut(s) 184, 230, 319, 358
BspMI ACCTGC 2 cut(s) 337, 607
BspOI GCTAGC 1 cut(s) 818
BspPI GGATC 1 cut(s) 445
BsrBI CCGCTC 2 cut(s) 314, 323
BsrDI GCAATG 1 cut(s) 809
BsrFI RCCGGY 2 cut(s) 134, 158
BsrI ACTGG 3 cut(s) 211, 303, 781
BssAI RCCGGY 2 cut(s) 134, 158
BssECI CCNNGG 4 cut(s) 262, 276, 690, 894
BssMI GATC 2 cut(s) 417, 437
BssNI GRCGYC 3 cut(s) 384, 519, 551
BssSI CACGAG 1 cut(s) 268
BssT1I CCWWGG 2 cut(s) 262, 894
Bst2BI CACGAG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 117, 392
Bst4CI ACNGT 2 cut(s) 109, 872
BstACI GRCGYC 3 cut(s) 384, 519, 551
BstBAI YACGTR 1 cut(s) 447
BstC8I GCNNGC 5 cut(s) 130, 368, 535, 599, 816
BstDEI CTNAG 2 cut(s) 32, 144
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 4 cut(s) 533, 542, 575, 656
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 3 cut(s) 134, 533, 575
BstKTI GATC 2 cut(s) 420, 440
BstMAI GTCTC 3 cut(s) 41, 828, 895
BstMBI GATC 2 cut(s) 417, 437
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 8 cut(s) 186, 216, 320, 329, 338, 363, 539, 824
BstNI CCWGG 2 cut(s) 117, 392
BstNSI RCATGY 2 cut(s) 597, 687
BstSCI CCNGG 4 cut(s) 115, 390, 458, 689
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 4 cut(s) 533, 542, 575, 656
BstV1I GCAGC 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 210
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 5 cut(s) 115, 219, 230, 261, 281
BtgI CCRYGG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 807
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 877
BveI ACCTGC 2 cut(s) 337, 607
Cac8I GCNNGC 5 cut(s) 130, 368, 535, 599, 816
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 3 cut(s) 134, 533, 575
Cfr10I RCCGGY 2 cut(s) 134, 158
Cfr13I GGNCC 4 cut(s) 217, 228, 229, 472
CseI GACGC 5 cut(s) 260, 456, 527, 548, 559
Csp6I GTAC 5 cut(s) 444, 610, 675, 687, 774
CviAII CATG 4 cut(s) 7, 594, 607, 684
CviQI GTAC 5 cut(s) 444, 610, 675, 687, 774
DdeI CTNAG 2 cut(s) 32, 144
DpnI GATC 2 cut(s) 419, 439
DpnII GATC 2 cut(s) 417, 437
DraIII CACNNNGTG 2 cut(s) 462, 874
EaeI YGGCCR 2 cut(s) 113, 279
EagI CGGCCG 1 cut(s) 279
EciI GGCGGA 1 cut(s) 710
Ecl136II GAGCTC 2 cut(s) 169, 499
EclXI CGGCCG 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 262, 894
Eco24I GRGCYC 3 cut(s) 171, 232, 501
Eco47I GGWCC 1 cut(s) 472
Eco52I CGGCCG 1 cut(s) 279
Eco53kI GAGCTC 2 cut(s) 169, 499
Eco88I CYCGRG 1 cut(s) 670
EcoICRI GAGCTC 2 cut(s) 169, 499
EcoRI GAATTC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 115, 390
EcoT14I CCWWGG 2 cut(s) 262, 894
EcoT38I GRGCYC 3 cut(s) 171, 232, 501
ErhI CCWWGG 2 cut(s) 262, 894
FaeI CATG 4 cut(s) 10, 597, 610, 687
FaqI GGGAC 3 cut(s) 309, 562, 621
FatI CATG 4 cut(s) 6, 593, 606, 683
FauI CCCGC 3 cut(s) 194, 245, 307
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 6 cut(s) 181, 220, 241, 321, 364, 802
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 3 cut(s) 171, 232, 501
Fsp4HI GCNGC 6 cut(s) 181, 220, 241, 321, 364, 802
FspBI CTAG 4 cut(s) 125, 338, 732, 815
GlaI GCGC 3 cut(s) 133, 532, 574
GluI GCNGC 6 cut(s) 181, 220, 241, 321, 364, 802
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 5 cut(s) 115, 219, 230, 261, 281
HapII CCGG 9 cut(s) 135, 159, 258, 360, 459, 481, 554, 690, 831
HgaI GACGC 5 cut(s) 260, 456, 527, 548, 559
HhaI GCGC 3 cut(s) 134, 533, 575
Hin1I GRCGYC 3 cut(s) 384, 519, 551
Hin1II CATG 4 cut(s) 10, 597, 610, 687
Hin6I GCGC 3 cut(s) 132, 531, 573
HinP1I GCGC 3 cut(s) 132, 531, 573
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 2 cut(s) 791, 836
HpaII CCGG 9 cut(s) 135, 159, 258, 360, 459, 481, 554, 690, 831
HphI GGTGA 4 cut(s) 46, 73, 163, 576
Hpy166II GTNNAC 4 cut(s) 91, 348, 511, 681
Hpy188I TCNGA 4 cut(s) 472, 492, 790, 796
Hpy188III TCNNGA 2 cut(s) 69, 294
Hpy8I GTNNAC 4 cut(s) 91, 348, 511, 681
Hpy99I CGWCG 6 cut(s) 254, 472, 512, 515, 521, 542
HpyAV CCTTC 3 cut(s) 94, 202, 791
HpyCH4III ACNGT 2 cut(s) 109, 872
HpyCH4IV ACGT 4 cut(s) 384, 446, 677, 806
HpyCH4V TGCA 4 cut(s) 243, 306, 597, 919
HpyF10VI GCNNNNNNNGC 8 cut(s) 186, 216, 320, 329, 338, 363, 539, 824
HpyF3I CTNAG 2 cut(s) 32, 144
HpySE526I ACGT 4 cut(s) 384, 446, 677, 806
Hsp92I GRCGYC 3 cut(s) 384, 519, 551
Hsp92II CATG 4 cut(s) 10, 597, 610, 687
HspAI GCGC 3 cut(s) 132, 531, 573
Kzo9I GATC 2 cut(s) 417, 437
LmnI GCTCC 7 cut(s) 71, 188, 205, 311, 317, 328, 362
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 2 cut(s) 263, 655
MaeI CTAG 4 cut(s) 125, 338, 732, 815
MaeII ACGT 4 cut(s) 384, 446, 677, 806
MaeIII GTNAC 2 cut(s) 98, 566
MalI GATC 2 cut(s) 419, 439
MbiI CCGCTC 2 cut(s) 314, 323
MboI GATC 2 cut(s) 417, 437
MboII GAAGA 3 cut(s) 719, 747, 846
MfeI CAATTG 1 cut(s) 858
MhlI GDGCHC 3 cut(s) 171, 232, 501
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 3 cut(s) 120, 751, 858
MluI ACGCGT 2 cut(s) 540, 654
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 1 cut(s) 830
MmeI TCCRAC 3 cut(s) 227, 450, 768
MnlI CCTC 4 cut(s) 41, 418, 485, 679
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 9 cut(s) 135, 159, 258, 360, 459, 481, 554, 690, 831
MspR9I CCNGG 4 cut(s) 117, 392, 460, 691
MunI CAATTG 1 cut(s) 858
MvaI CCWGG 2 cut(s) 117, 392
MvnI CGCG 4 cut(s) 533, 542, 575, 656
MwoI GCNNNNNNNGC 8 cut(s) 186, 216, 320, 329, 338, 363, 539, 824
NciI CCSGG 2 cut(s) 460, 691
NdeII GATC 2 cut(s) 417, 437
NheI GCTAGC 1 cut(s) 814
NlaIII CATG 4 cut(s) 10, 597, 610, 687
NlaIV GGNNCC 4 cut(s) 184, 230, 319, 358
NmeAIII GCCGAG 2 cut(s) 333, 367
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 2 cut(s) 597, 687
PaeR7I CTCGAG 1 cut(s) 670
PaqCI CACCTGC 2 cut(s) 337, 607
PciI ACATGT 1 cut(s) 683
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 1 cut(s) 791
PkrI GCNGC 6 cut(s) 182, 221, 242, 322, 365, 803
PleI GAGTC 1 cut(s) 830
PpsI GAGTC 1 cut(s) 830
Ppu21I YACGTR 1 cut(s) 447
PscI ACATGT 1 cut(s) 683
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 2 cut(s) 171, 501
Psp6I CCWGG 2 cut(s) 115, 390
PspGI CCWGG 2 cut(s) 115, 390
PspN4I GGNNCC 4 cut(s) 184, 230, 319, 358
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 4 cut(s) 217, 228, 229, 472
PspXI VCTCGAGB 1 cut(s) 670
PstNI CAGNNNCTG 1 cut(s) 776
RsaI GTAC 5 cut(s) 445, 611, 676, 688, 775
RsaNI GTAC 5 cut(s) 444, 610, 675, 687, 774
SacI GAGCTC 2 cut(s) 171, 501
SalI GTCGAC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 6 cut(s) 181, 220, 241, 321, 364, 802
Sau3AI GATC 2 cut(s) 417, 437
Sau96I GGNCC 4 cut(s) 217, 228, 229, 472
SchI GAGTC 1 cut(s) 830
ScrFI CCNGG 4 cut(s) 117, 392, 460, 691
SduI GDGCHC 3 cut(s) 171, 232, 501
SfaNI GCATC 2 cut(s) 263, 655
Sfr274I CTCGAG 1 cut(s) 670
SgrDI CGTCGACG 1 cut(s) 509
SinI GGWCC 1 cut(s) 472
SlaI CTCGAG 1 cut(s) 670
SmlI CTYRAG 2 cut(s) 500, 670
SmoI CTYRAG 2 cut(s) 500, 670
Sse9I AATT 3 cut(s) 120, 751, 858
SspMI CTAG 4 cut(s) 125, 338, 732, 815
SstI GAGCTC 2 cut(s) 171, 501
StyD4I CCNGG 4 cut(s) 115, 390, 458, 689
StyI CCWWGG 2 cut(s) 262, 894
TaaI ACNGT 2 cut(s) 109, 872
TaiI ACGT 4 cut(s) 387, 449, 680, 809
TaqI TCGA 3 cut(s) 249, 510, 671
TasI AATT 3 cut(s) 120, 751, 858
TatI WGTACW 1 cut(s) 609
TauI GCSGC 5 cut(s) 183, 222, 323, 366, 804
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 472
XapI RAATTY 2 cut(s) 120, 751
XceI RCATGY 2 cut(s) 597, 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 670
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 4 cut(s) 125, 338, 732, 815
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.