Rh6CG014900

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003319
Physical Location & Seq
Reverse (-)
1601694 .. 1604179
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG014900.1

Sequence Viewer

Length: 723 bp
ATGGGCAACCTAATTCTCAGCCTCCTTCTCGTACTGGTCACCTCCAAAGGCGTTTCCGGTGCTACATTCACCTTCGTCAACAGATGTGACTACACAGTTTGGCCCGGGATTCTCGCAAATGCAAACAGTCCTAGGCTCGACAGCACGGGATTCGAGCTCCCAAGACAAACCGCCCGAACATTCCAAGCCCCGACCGGCTGGTCCGGCCGTTTCTGGGGCCGAACCGGCTGCACTTTCGACGGATCCGGGTCCGGGTCATGCCAAACCGGCGACTGCGGCTCCGGCACCGTGGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCTACTCTAGCCGAGTTCACCCTCGGCACCGGCGGGCAGGACTTCTATGACGTCAGCCTCGTCGACGGGTACAACTTGCCCGTTTTCGTGGAAGGGACTGGCGGGTCGGGTCAGTGCGCTTCGACCGGGTGCTCCACGGATCTGAACCTGCAGTGCCCGACTGAGCTGAGGAGCGAGGATGGGAGCGCGTGCAAGAGCGCGTGTGAGGCGTTTGGGAGCCCTGAGTACTGCTGTAGCGGCGCGTATGGCTCACCCTCGACTTGTCGGCCGTCGGTTTACTCCGAGATGTTTAAGGCTGCTTGTCCCAAGTCGTATAGCTACGCGTACGACGATGCTACGAGTACGTTTACGTGCACCGGAGCTGATTATACGGTGACGTTTTGCCCTTCATCTCCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

240

Amino Acids

24.91

Weight (kDa)

4.45

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 27 - 236 5.1e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 199, 424
AatII GACGTC 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 477
AccB1I GGYRCC 3 cut(s) 284, 302, 347
AccI GTMKAC 1 cut(s) 384
AccII CGCG 4 cut(s) 509, 521, 563, 644
AciI CCGC 7 cut(s) 171, 276, 312, 317, 354, 423, 558
AclWI GGATC 3 cut(s) 237, 250, 468
AcoI YGGCCR 2 cut(s) 205, 587
AcyI GRCGYC 2 cut(s) 303, 372
AfaI GTAC 5 cut(s) 33, 392, 548, 647, 664
AfiI CCNNNNNNNGG 2 cut(s) 214, 252
AflIII ACRYGT 1 cut(s) 642
AluBI AGCT 4 cut(s) 157, 487, 639, 683
AluI AGCT 4 cut(s) 157, 487, 639, 683
Alw21I GWGCWC 3 cut(s) 159, 455, 677
Alw44I GTGCAC 1 cut(s) 673
AlwI GGATC 3 cut(s) 237, 250, 468
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 4 cut(s) 101, 205, 217, 587
ApaLI GTGCAC 1 cut(s) 673
ApeKI GCWGC 2 cut(s) 228, 617
AspA2I CCTAGG 1 cut(s) 131
AspLEI GCGC 5 cut(s) 305, 440, 509, 521, 563
AspS9I GGNCC 4 cut(s) 102, 201, 217, 249
AsuC2I CCSGG 5 cut(s) 105, 106, 247, 253, 448
AsuHPI GGTGA 5 cut(s) 31, 61, 331, 564, 706
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 201, 249
AvrII CCTAGG 1 cut(s) 131
BaeGI GKGCMC 2 cut(s) 479, 677
BamHI GGATCC 1 cut(s) 242
BanI GGYRCC 3 cut(s) 284, 302, 347
BanII GRGCYC 2 cut(s) 159, 542
Bbv12I GWGCWC 3 cut(s) 159, 455, 677
BbvCI CCTCAGC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 215, 604
BccI CCATC 1 cut(s) 494
BceAI ACGGC 3 cut(s) 192, 316, 574
BcgI CGANNNNNNTGC 4 cut(s) 133, 167, 210, 244
BcnI CCSGG 5 cut(s) 105, 106, 247, 253, 448
BfaI CTAG 2 cut(s) 132, 329
BfmI CTRYAG 2 cut(s) 470, 553
BfoI RGCGCY 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 477
BglI GCCNNNNNGGC 3 cut(s) 225, 267, 320
BisI GCNGC 5 cut(s) 229, 277, 312, 559, 618
BlnI CCTAGG 1 cut(s) 131
BlsI GCNGC 5 cut(s) 230, 278, 313, 560, 619
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 5 cut(s) 105, 106, 247, 253, 448
Bme18I GGWCC 2 cut(s) 201, 249
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 4 cut(s) 102, 201, 217, 249
BmiI GGNNCC 9 cut(s) 218, 244, 250, 280, 286, 304, 310, 349, 539
BmrFI CCNGG 5 cut(s) 105, 106, 247, 253, 448
BmsI GCATC 1 cut(s) 643
Bpu10I CCTNAGC 1 cut(s) 488
BpuMI CCSGG 5 cut(s) 105, 106, 247, 253, 448
BsaAI YACGTR 1 cut(s) 672
BsaHI GRCGYC 2 cut(s) 303, 372
BsaJI CCNNGG 6 cut(s) 104, 131, 288, 343, 456, 716
BsaWI WCCGGW 2 cut(s) 56, 677
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 252
Bse118I RCCGGY 5 cut(s) 194, 224, 266, 319, 350
Bse1I ACTGG 2 cut(s) 39, 424
BseDI CCNNGG 6 cut(s) 104, 131, 288, 343, 456, 716
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 2 cut(s) 214, 252
BseMII CTCAG 4 cut(s) 31, 474, 479, 534
BseNI ACTGG 2 cut(s) 39, 424
BseRI GAGGAG 1 cut(s) 505
BseSI GKGCMC 2 cut(s) 479, 677
BseX3I CGGCCG 2 cut(s) 205, 587
BseXI GCAGC 2 cut(s) 215, 604
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 4 cut(s) 509, 521, 563, 644
Bsh1285I CGRYCG 4 cut(s) 195, 208, 447, 590
BshFI GGCC 4 cut(s) 103, 207, 219, 589
BshNI GGYRCC 3 cut(s) 284, 302, 347
BsiEI CGRYCG 4 cut(s) 195, 208, 447, 590
BsiHKAI GWGCWC 3 cut(s) 159, 455, 677
BsiHKCI CYCGRG 1 cut(s) 104
BsiWI CGTACG 1 cut(s) 645
BslFI GGGAC 2 cut(s) 430, 609
BslI CCNNNNNNNGG 2 cut(s) 214, 252
BsmFI GGGAC 2 cut(s) 430, 609
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 4 cut(s) 103, 207, 219, 589
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 5 cut(s) 159, 455, 479, 542, 677
Bsp143I GATC 2 cut(s) 242, 460
BspACI CCGC 7 cut(s) 171, 276, 312, 317, 354, 423, 558
BspANI GGCC 4 cut(s) 103, 207, 219, 589
BspCNI CTCAG 4 cut(s) 30, 475, 480, 535
BspFNI CGCG 4 cut(s) 509, 521, 563, 644
BspLI GGNNCC 9 cut(s) 218, 244, 250, 280, 286, 304, 310, 349, 539
BspMAI CTGCAG 1 cut(s) 474
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 237, 250, 468
BspT107I GGYRCC 3 cut(s) 284, 302, 347
BsrFI RCCGGY 5 cut(s) 194, 224, 266, 319, 350
BsrI ACTGG 2 cut(s) 39, 424
BssAI RCCGGY 5 cut(s) 194, 224, 266, 319, 350
BssECI CCNNGG 6 cut(s) 104, 131, 288, 343, 456, 716
BssMI GATC 2 cut(s) 242, 460
BssNI GRCGYC 2 cut(s) 303, 372
BssT1I CCWWGG 2 cut(s) 131, 716
Bst4CI ACNGT 4 cut(s) 97, 128, 289, 694
BstACI GRCGYC 2 cut(s) 303, 372
BstBAI YACGTR 1 cut(s) 672
BstC8I GCNNGC 3 cut(s) 321, 356, 511
BstDEI CTNAG 4 cut(s) 17, 483, 488, 543
BstDSI CCRYGG 2 cut(s) 288, 456
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 4 cut(s) 509, 521, 563, 644
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 5 cut(s) 305, 440, 509, 521, 563
BstKTI GATC 2 cut(s) 245, 463
BstMBI GATC 2 cut(s) 242, 460
BstMCI CGRYCG 4 cut(s) 195, 208, 447, 590
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 5 cut(s) 103, 104, 245, 251, 446
BstSFI CTRYAG 2 cut(s) 470, 553
BstSLI GKGCMC 2 cut(s) 479, 677
BstUI CGCG 4 cut(s) 509, 521, 563, 644
BstV1I GCAGC 2 cut(s) 215, 604
BstX2I RGATCY 2 cut(s) 242, 460
BstYI RGATCY 2 cut(s) 242, 460
BstZI CGGCCG 2 cut(s) 205, 587
BsuRI GGCC 4 cut(s) 103, 207, 219, 589
BtgI CCRYGG 2 cut(s) 288, 456
BtsCI GGATG 1 cut(s) 505
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 440, 479
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 3 cut(s) 321, 356, 511
CfoI GCGC 5 cut(s) 305, 440, 509, 521, 563
Cfr10I RCCGGY 5 cut(s) 194, 224, 266, 319, 350
Cfr13I GGNCC 4 cut(s) 102, 201, 217, 249
Cfr9I CCCGGG 1 cut(s) 104
Csp6I GTAC 5 cut(s) 32, 391, 547, 646, 663
CviAII CATG 1 cut(s) 258
CviQI GTAC 5 cut(s) 32, 391, 547, 646, 663
DdeI CTNAG 4 cut(s) 17, 483, 488, 543
DinI GGCGCC 1 cut(s) 304
DpnI GATC 2 cut(s) 244, 462
DpnII GATC 2 cut(s) 242, 460
DrdI GACNNNNNNGTC 2 cut(s) 199, 424
DseDI GACNNNNNNGTC 2 cut(s) 199, 424
EaeI YGGCCR 2 cut(s) 205, 587
EagI CGGCCG 2 cut(s) 205, 587
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 2 cut(s) 205, 587
Eco130I CCWWGG 2 cut(s) 131, 716
Eco24I GRGCYC 2 cut(s) 159, 542
Eco47I GGWCC 2 cut(s) 201, 249
Eco52I CGGCCG 2 cut(s) 205, 587
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 131, 716
EcoT38I GRGCYC 2 cut(s) 159, 542
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 131, 716
FaeI CATG 1 cut(s) 261
FaiI YATR 5 cut(s) 259, 369, 567, 636, 690
FaqI GGGAC 2 cut(s) 430, 609
FatI CATG 1 cut(s) 257
FauI CCCGC 3 cut(s) 324, 347, 416
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 5 cut(s) 229, 277, 312, 559, 618
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 2 cut(s) 159, 542
Fsp4HI GCNGC 5 cut(s) 229, 277, 312, 559, 618
FspBI CTAG 2 cut(s) 132, 329
GlaI GCGC 5 cut(s) 304, 439, 508, 520, 562
GluI GCNGC 5 cut(s) 229, 277, 312, 559, 618
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 4 cut(s) 103, 207, 219, 589
HhaI GCGC 5 cut(s) 305, 440, 509, 521, 563
Hin1I GRCGYC 2 cut(s) 303, 372
Hin1II CATG 1 cut(s) 261
Hin6I GCGC 5 cut(s) 303, 438, 507, 519, 561
HinP1I GCGC 5 cut(s) 303, 438, 507, 519, 561
HincII GTYRAC 2 cut(s) 79, 385
HindII GTYRAC 2 cut(s) 79, 385
HinfI GANTC 2 cut(s) 109, 150
HphI GGTGA 5 cut(s) 31, 61, 331, 564, 706
Hpy166II GTNNAC 6 cut(s) 79, 339, 385, 598, 669, 675
Hpy188I TCNGA 2 cut(s) 465, 604
Hpy8I GTNNAC 6 cut(s) 79, 339, 385, 598, 669, 675
Hpy99I CGWCG 5 cut(s) 242, 386, 389, 595, 653
HpyAV CCTTC 4 cut(s) 35, 82, 407, 717
HpyCH4III ACNGT 4 cut(s) 97, 128, 289, 694
HpyCH4IV ACGT 4 cut(s) 372, 665, 671, 698
HpyCH4V TGCA 6 cut(s) 122, 231, 297, 472, 513, 675
HpyF3I CTNAG 4 cut(s) 17, 483, 488, 543
HpySE526I ACGT 4 cut(s) 372, 665, 671, 698
Hsp92I GRCGYC 2 cut(s) 303, 372
Hsp92II CATG 1 cut(s) 261
HspAI GCGC 5 cut(s) 303, 438, 507, 519, 561
KasI GGCGCC 1 cut(s) 302
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 242, 460
LmnI GCTCC 8 cut(s) 162, 284, 308, 458, 492, 504, 537, 680
Lsp1109I GCAGC 2 cut(s) 215, 604
LweI GCATC 1 cut(s) 643
MaeI CTAG 2 cut(s) 132, 329
MaeII ACGT 4 cut(s) 372, 665, 671, 698
MaeIII GTNAC 3 cut(s) 37, 86, 694
MalI GATC 2 cut(s) 244, 462
MboI GATC 2 cut(s) 242, 460
MflI RGATCY 2 cut(s) 242, 460
MhlI GDGCHC 5 cut(s) 159, 455, 479, 542, 677
MluCI AATT 1 cut(s) 12
MluI ACGCGT 1 cut(s) 642
Mly113I GGCGCC 1 cut(s) 303
MnlI CCTC 8 cut(s) 32, 52, 353, 389, 483, 490, 520, 586
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 1 cut(s) 612
MspR9I CCNGG 5 cut(s) 105, 106, 247, 253, 448
Mva1269I GAATGC 1 cut(s) 299
MvnI CGCG 4 cut(s) 509, 521, 563, 644
NaeI GCCGGC 1 cut(s) 321
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 5 cut(s) 105, 106, 247, 253, 448
NdeII GATC 2 cut(s) 242, 460
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 1 cut(s) 261
NlaIV GGNNCC 9 cut(s) 218, 244, 250, 280, 286, 304, 310, 349, 539
NmeAIII GCCGAG 2 cut(s) 324, 358
NmuCI GTSAC 3 cut(s) 37, 86, 694
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 648
PctI GAATGC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 109, 150
Pfl23II CGTACG 1 cut(s) 645
PkrI GCNGC 5 cut(s) 230, 278, 313, 560, 619
PluTI GGCGCC 1 cut(s) 306
Ppu21I YACGTR 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 37
PspLI CGTACG 1 cut(s) 645
PspN4I GGNNCC 9 cut(s) 218, 244, 250, 280, 286, 304, 310, 349, 539
PspPI GGNCC 4 cut(s) 102, 201, 217, 249
PstI CTGCAG 1 cut(s) 474
PsuI RGATCY 2 cut(s) 242, 460
RsaI GTAC 5 cut(s) 33, 392, 548, 647, 664
RsaNI GTAC 5 cut(s) 32, 391, 547, 646, 663
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 5 cut(s) 229, 277, 312, 559, 618
Sau3AI GATC 2 cut(s) 242, 460
Sau96I GGNCC 4 cut(s) 102, 201, 217, 249
ScaI AGTACT 1 cut(s) 548
ScrFI CCNGG 5 cut(s) 105, 106, 247, 253, 448
SduI GDGCHC 5 cut(s) 159, 455, 479, 542, 677
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 2 cut(s) 470, 553
SfoI GGCGCC 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 350
SgrDI CGTCGACG 1 cut(s) 383
SinI GGWCC 2 cut(s) 201, 249
SmaI CCCGGG 1 cut(s) 106
Sse9I AATT 1 cut(s) 12
SsiI CCGC 7 cut(s) 171, 276, 312, 317, 354, 423, 558
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 2 cut(s) 132, 329
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 5 cut(s) 103, 104, 245, 251, 446
StyI CCWWGG 2 cut(s) 131, 716
TaaI ACNGT 4 cut(s) 97, 128, 289, 694
TaiI ACGT 4 cut(s) 375, 668, 674, 701
TaqI TCGA 6 cut(s) 138, 153, 237, 384, 443, 578
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 546
TauI GCSGC 3 cut(s) 279, 314, 561
TfiI GAWTC 2 cut(s) 109, 150
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 2 cut(s) 440, 479
TseFI GTSAC 3 cut(s) 37, 86, 694
TseI GCWGC 2 cut(s) 228, 617
Tsp45I GTSAC 3 cut(s) 37, 86, 694
TspDTI ATGAA 1 cut(s) 699
TspGWI ACGGA 2 cut(s) 255, 473
TspMI CCCGGG 1 cut(s) 104
TspRI CASTG 2 cut(s) 440, 479
VneI GTGCAC 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 201, 249
XmaI CCCGGG 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 2 cut(s) 132, 329
ZraI GACGTC 1 cut(s) 373
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.