RLG00000016869

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003319
Physical Location & Seq
Reverse (-)
10794348 .. 10795627
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016869

Sequence Viewer

Length: 933 bp
ATGCTCATGGGAACTCCATTTTCCTATTACCTCAGCCTCATTTTTCTTATCACCACCAAAGGGGTATCAGGAGCTACATTCACCTTCGTAAACAAATGTGACTTCACGGTATGGCCAGGAATTCTATCCAGCGCCGGTAGTCCTAAGCTGGACAGCACCGGCTTTGAGCTAACCAAAGGCGGCTCCCGCACCTTGCAAGCTCCAGCTGGCTGGTCGGGCCGCTTCTGGGCCCGAACCCGCTGCAACTTCGACGCATCCGGCCTTGGCTCGTGTGCCACGGCCGATTGCGGTTCGGGACTGGAGTGCAACGGAGCGGGAGCCGCTCCACCTGCCACCCTAGCTGAGTTCACGCTCGGCTCCGGCTCGGGTGGCACGCTGGATTTTTATGACGTCAGCCTGGTTGATGGTTATAACTTGCCTATGATCGTGGAGGGGAGTGGGGGATCAGGTACGTGCGCCACCACCGGGTGTGCGTCGGACCTCAACCGGAGTTGTCCGAATGAGCTCAAGGTCGTCGATGGCGACGCCTGTAAGAGCGCGTGCGACGCGTTTGGGACGCCGGAGTATTGTTGTAACGGCGCGTATGCTTCACCTGACACATGCAAGCCGTCCATGTACTCGCAGGTGTTTAAGTCGGCTTGTCCCAAGTCGTATAGCTACGCGTATGATGATGCCTCGAGTACGTTTACATGTACCGGGGCGGATTATACAATCACATTTTGTGCTTCACTTCTTCCTAGTGTAAAGTCCGCAACAAATTCTTCTCCACAGATATCAGGTGCCGGGTCAGGGTCGGAATCGGAAGGCGGCACTAGGCTGGTAGCCACTCATGTGCCAACTGATCCACTAAGTGGCATAGTTGAGAGACCTAGAGAAAGCGAAGCACCAGCACCAACAATTCAACTTCATGATGGTGATCTGGGGATTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

311

Amino Acids

31.78

Weight (kDa)

4.56

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 241 2e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AarI CACCTGC 2 cut(s) 337, 613
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 2 cut(s) 337, 613
AccB1I GGYRCC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 851
AccBSI CCGCTC 2 cut(s) 314, 323
AccII CGCG 4 cut(s) 539, 548, 581, 662
AclWI GGATC 2 cut(s) 451, 836
AcoI YGGCCR 2 cut(s) 113, 279
AcsI RAATTY 2 cut(s) 120, 757
AcyI GRCGYC 3 cut(s) 390, 525, 557
AdeI CACNNNGTG 2 cut(s) 468, 851
AfaI GTAC 4 cut(s) 451, 617, 682, 694
AfiI CCNNNNNNNGG 5 cut(s) 60, 226, 465, 789, 851
AflIII ACRYGT 3 cut(s) 546, 660, 689
AgsI TTSAA 1 cut(s) 902
AjnI CCWGG 2 cut(s) 115, 396
AleI CACNNNNGTG 1 cut(s) 830
AluBI AGCT 8 cut(s) 74, 148, 169, 200, 206, 341, 505, 657
AluI AGCT 8 cut(s) 74, 148, 169, 200, 206, 341, 505, 657
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 859
AlwI GGATC 2 cut(s) 451, 836
Ama87I CYCGRG 2 cut(s) 364, 676
AoxI GGCC 5 cut(s) 113, 217, 228, 259, 279
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 120, 757
AspLEI GCGC 4 cut(s) 134, 458, 539, 581
AspS9I GGNCC 4 cut(s) 217, 228, 229, 478
AsuC2I CCSGG 3 cut(s) 466, 697, 784
AsuHPI GGTGA 4 cut(s) 43, 73, 582, 926
AvaI CYCGRG 2 cut(s) 364, 676
AvaII GGWCC 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 115
BanI GGYRCC 1 cut(s) 779
BanII GRGCYC 2 cut(s) 232, 507
BauI CACGAG 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 507
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 227
BccI CCATC 3 cut(s) 398, 512, 905
BceAI ACGGC 3 cut(s) 294, 592, 592
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 2 cut(s) 117, 398
BcnI CCSGG 3 cut(s) 466, 697, 784
BcoDI GTCTC 1 cut(s) 859
BfaI CTAG 5 cut(s) 338, 738, 813, 870, 931
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 2 cut(s) 337, 613
BisI GCNGC 5 cut(s) 181, 220, 241, 321, 808
BlsI GCNGC 5 cut(s) 182, 221, 242, 322, 809
Bme1390I CCNGG 5 cut(s) 117, 398, 466, 697, 784
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 2 cut(s) 364, 676
BmgT120I GGNCC 4 cut(s) 217, 228, 229, 478
BmiI GGNNCC 5 cut(s) 184, 230, 319, 358, 781
BmrFI CCNGG 5 cut(s) 117, 398, 466, 697, 784
BmsI GCATC 2 cut(s) 263, 661
BpmI CTGGAG 2 cut(s) 186, 320
Bpu10I CCTNAGC 2 cut(s) 32, 144
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 3 cut(s) 466, 697, 784
BsaAI YACGTR 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 915
BsaHI GRCGYC 3 cut(s) 390, 525, 557
BsaI GGTCTC 1 cut(s) 859
BsaJI CCNNGG 3 cut(s) 262, 276, 696
BsaWI WCCGGW 1 cut(s) 486
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 226, 465, 789, 851
Bse118I RCCGGY 2 cut(s) 134, 158
Bse1I ACTGG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 2 cut(s) 117, 398
BseDI CCNNGG 3 cut(s) 262, 276, 696
BseGI GGATG 1 cut(s) 254
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 5 cut(s) 60, 226, 465, 789, 851
BseMII CTCAG 2 cut(s) 46, 333
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 232
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 227
Bsh1236I CGCG 4 cut(s) 539, 548, 581, 662
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 5 cut(s) 115, 219, 230, 261, 281
BshNI GGYRCC 1 cut(s) 779
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 507
BsiHKCI CYCGRG 2 cut(s) 364, 676
BsiSI CCGG 9 cut(s) 135, 159, 258, 360, 465, 487, 560, 696, 783
BslFI GGGAC 3 cut(s) 309, 568, 627
BslI CCNNNNNNNGG 5 cut(s) 60, 226, 465, 789, 851
BsmAI GTCTC 1 cut(s) 859
BsmFI GGGAC 3 cut(s) 309, 568, 627
BsnI GGCC 5 cut(s) 115, 219, 230, 261, 281
Bso31I GGTCTC 1 cut(s) 859
BsoBI CYCGRG 2 cut(s) 364, 676
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 232, 507
Bsp143I GATC 4 cut(s) 423, 443, 841, 916
BspANI GGCC 5 cut(s) 115, 219, 230, 261, 281
BspCNI CTCAG 2 cut(s) 45, 334
BspFNI CGCG 4 cut(s) 539, 548, 581, 662
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 5 cut(s) 184, 230, 319, 358, 781
BspMI ACCTGC 2 cut(s) 337, 613
BspPI GGATC 2 cut(s) 451, 836
BspT107I GGYRCC 1 cut(s) 779
BspTNI GGTCTC 1 cut(s) 859
BsrBI CCGCTC 2 cut(s) 314, 323
BsrFI RCCGGY 2 cut(s) 134, 158
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 2 cut(s) 134, 158
BssECI CCNNGG 3 cut(s) 262, 276, 696
BssMI GATC 4 cut(s) 423, 443, 841, 916
BssNI GRCGYC 3 cut(s) 390, 525, 557
BssSI CACGAG 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 117, 398
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 3 cut(s) 390, 525, 557
BstBAI YACGTR 1 cut(s) 453
BstC8I GCNNGC 5 cut(s) 198, 208, 374, 541, 605
BstDEI CTNAG 4 cut(s) 32, 144, 342, 848
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 4 cut(s) 539, 548, 581, 662
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 4 cut(s) 134, 458, 539, 581
BstKTI GATC 4 cut(s) 426, 446, 844, 919
BstMAI GTCTC 1 cut(s) 859
BstMBI GATC 4 cut(s) 423, 443, 841, 916
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 7 cut(s) 186, 216, 320, 329, 338, 369, 545
BstNI CCWGG 2 cut(s) 117, 398
BstNSI RCATGY 2 cut(s) 603, 693
BstSCI CCNGG 5 cut(s) 115, 396, 464, 695, 782
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 4 cut(s) 539, 548, 581, 662
BstV1I GCAGC 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 210
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 5 cut(s) 115, 219, 230, 261, 281
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 254
BveI ACCTGC 2 cut(s) 337, 613
Cac8I GCNNGC 5 cut(s) 198, 208, 374, 541, 605
CciI TCATGA 1 cut(s) 907
CfoI GCGC 4 cut(s) 134, 458, 539, 581
Cfr10I RCCGGY 2 cut(s) 134, 158
Cfr13I GGNCC 4 cut(s) 217, 228, 229, 478
CseI GACGC 5 cut(s) 260, 462, 533, 554, 565
Csp6I GTAC 4 cut(s) 450, 616, 681, 693
CviAII CATG 6 cut(s) 7, 600, 613, 690, 830, 908
CviQI GTAC 4 cut(s) 450, 616, 681, 693
DdeI CTNAG 4 cut(s) 32, 144, 342, 848
DpnI GATC 4 cut(s) 425, 445, 843, 918
DpnII GATC 4 cut(s) 423, 443, 841, 916
DraIII CACNNNGTG 2 cut(s) 468, 851
EaeI YGGCCR 2 cut(s) 113, 279
EagI CGGCCG 1 cut(s) 279
EciI GGCGGA 1 cut(s) 716
Ecl136II GAGCTC 1 cut(s) 505
EclXI CGGCCG 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 2 cut(s) 232, 507
Eco31I GGTCTC 1 cut(s) 859
Eco32I GATATC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 478
Eco52I CGGCCG 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 505
Eco88I CYCGRG 2 cut(s) 364, 676
EcoICRI GAGCTC 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 115, 396
EcoRV GATATC 1 cut(s) 774
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 2 cut(s) 232, 507
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 6 cut(s) 10, 603, 616, 693, 833, 911
FaqI GGGAC 3 cut(s) 309, 568, 627
FatI CATG 6 cut(s) 6, 599, 612, 689, 829, 907
FauI CCCGC 3 cut(s) 194, 245, 307
Fnu4HI GCNGC 5 cut(s) 181, 220, 241, 321, 808
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 2 cut(s) 232, 507
Fsp4HI GCNGC 5 cut(s) 181, 220, 241, 321, 808
FspBI CTAG 5 cut(s) 338, 738, 813, 870, 931
GlaI GCGC 4 cut(s) 133, 457, 538, 580
GluI GCNGC 5 cut(s) 181, 220, 241, 321, 808
GsuI CTGGAG 2 cut(s) 186, 320
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 5 cut(s) 115, 219, 230, 261, 281
HapII CCGG 9 cut(s) 135, 159, 258, 360, 465, 487, 560, 696, 783
HgaI GACGC 5 cut(s) 260, 462, 533, 554, 565
HhaI GCGC 4 cut(s) 134, 458, 539, 581
Hin1I GRCGYC 3 cut(s) 390, 525, 557
Hin1II CATG 6 cut(s) 10, 603, 616, 693, 833, 911
Hin6I GCGC 4 cut(s) 132, 456, 537, 579
HinP1I GCGC 4 cut(s) 132, 456, 537, 579
HinfI GANTC 1 cut(s) 797
HpaII CCGG 9 cut(s) 135, 159, 258, 360, 465, 487, 560, 696, 783
HphI GGTGA 4 cut(s) 43, 73, 582, 926
Hpy166II GTNNAC 3 cut(s) 91, 348, 687
Hpy188I TCNGA 4 cut(s) 478, 498, 796, 802
Hpy188III TCNNGA 3 cut(s) 69, 294, 908
Hpy8I GTNNAC 3 cut(s) 91, 348, 687
Hpy99I CGWCG 5 cut(s) 254, 478, 518, 527, 548
HpyAV CCTTC 2 cut(s) 94, 797
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 3 cut(s) 390, 452, 683
HpyCH4V TGCA 4 cut(s) 196, 243, 306, 603
HpyF10VI GCNNNNNNNGC 7 cut(s) 186, 216, 320, 329, 338, 369, 545
HpyF3I CTNAG 4 cut(s) 32, 144, 342, 848
HpySE526I ACGT 3 cut(s) 390, 452, 683
Hsp92I GRCGYC 3 cut(s) 390, 525, 557
Hsp92II CATG 6 cut(s) 10, 603, 616, 693, 833, 911
HspAI GCGC 4 cut(s) 132, 456, 537, 579
Kzo9I GATC 4 cut(s) 423, 443, 841, 916
LmnI GCTCC 7 cut(s) 71, 188, 205, 311, 317, 328, 362
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 2 cut(s) 263, 661
MaeI CTAG 5 cut(s) 338, 738, 813, 870, 931
MaeII ACGT 3 cut(s) 390, 452, 683
MaeIII GTNAC 2 cut(s) 98, 572
MalI GATC 4 cut(s) 425, 445, 843, 918
MbiI CCGCTC 2 cut(s) 314, 323
MboI GATC 4 cut(s) 423, 443, 841, 916
MboII GAAGA 2 cut(s) 725, 753
MhlI GDGCHC 2 cut(s) 232, 507
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 3 cut(s) 120, 757, 897
MluI ACGCGT 2 cut(s) 546, 660
MluNI TGGCCA 1 cut(s) 115
MmeI TCCRAC 2 cut(s) 456, 774
MnlI CCTC 5 cut(s) 41, 47, 424, 491, 685
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 2 cut(s) 830, 912
Msp20I TGGCCA 1 cut(s) 115
MspA1I CMGCKG 2 cut(s) 206, 240
MspI CCGG 9 cut(s) 135, 159, 258, 360, 465, 487, 560, 696, 783
MspR9I CCNGG 5 cut(s) 117, 398, 466, 697, 784
MvaI CCWGG 2 cut(s) 117, 398
MvnI CGCG 4 cut(s) 539, 548, 581, 662
MwoI GCNNNNNNNGC 7 cut(s) 186, 216, 320, 329, 338, 369, 545
NciI CCSGG 3 cut(s) 466, 697, 784
NdeII GATC 4 cut(s) 423, 443, 841, 916
NlaIII CATG 6 cut(s) 10, 603, 616, 693, 833, 911
NlaIV GGNNCC 5 cut(s) 184, 230, 319, 358, 781
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 2 cut(s) 603, 693
OliI CACNNNNGTG 1 cut(s) 830
PaeR7I CTCGAG 1 cut(s) 676
PagI TCATGA 1 cut(s) 907
PaqCI CACCTGC 2 cut(s) 337, 613
PciI ACATGT 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PfeI GAWTC 1 cut(s) 797
PflMI CCANNNNNTGG 1 cut(s) 851
PkrI GCNGC 5 cut(s) 182, 221, 242, 322, 809
Ppu21I YACGTR 1 cut(s) 453
PscI ACATGT 1 cut(s) 689
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 115, 396
PspGI CCWGG 2 cut(s) 115, 396
PspN4I GGNNCC 5 cut(s) 184, 230, 319, 358, 781
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 4 cut(s) 217, 228, 229, 478
PspXI VCTCGAGB 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 4 cut(s) 451, 617, 682, 694
RsaNI GTAC 4 cut(s) 450, 616, 681, 693
RseI CAYNNNNRTG 2 cut(s) 830, 912
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 5 cut(s) 181, 220, 241, 321, 808
Sau3AI GATC 4 cut(s) 423, 443, 841, 916
Sau96I GGNCC 4 cut(s) 217, 228, 229, 478
ScrFI CCNGG 5 cut(s) 117, 398, 466, 697, 784
SduI GDGCHC 2 cut(s) 232, 507
SfaNI GCATC 2 cut(s) 263, 661
Sfr274I CTCGAG 1 cut(s) 676
SinI GGWCC 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 676
SmiMI CAYNNNNRTG 2 cut(s) 830, 912
SmlI CTYRAG 2 cut(s) 506, 676
SmoI CTYRAG 2 cut(s) 506, 676
Sse9I AATT 3 cut(s) 120, 757, 897
SspMI CTAG 5 cut(s) 338, 738, 813, 870, 931
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 5 cut(s) 115, 396, 464, 695, 782
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 3 cut(s) 393, 455, 686
TaqI TCGA 3 cut(s) 249, 516, 677
TasI AATT 3 cut(s) 120, 757, 897
TatI WGTACW 1 cut(s) 615
TauI GCSGC 4 cut(s) 183, 222, 323, 810
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 896
TspGWI ACGGA 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 851
VpaK11BI GGWCC 1 cut(s) 478
XapI RAATTY 2 cut(s) 120, 757
XceI RCATGY 2 cut(s) 603, 693
XhoI CTCGAG 1 cut(s) 676
XspI CTAG 5 cut(s) 338, 738, 813, 870, 931
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.