Rw2G009870

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003319
Physical Location & Seq
Reverse (-)
9970639 .. 9972118
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G009870.1

Sequence Viewer

Length: 930 bp
ATGCTTATGCGAACTCCATTTTCCTATTACCTCAGCCTCATTTTTCTCATCATCACCAAAGGGGTATCAGGAGCTACATTCACCTTCGTAAACAAATGTGACTTCACGGTATGGCCAGGAATTCTAGCCAGCGCCGGTAGTCCTAAGCTGGACAGCACCGGCTTTGAGCTCACCAAAGGCGGCTCCCGCACCTTCCAAGCTCCAACTGGCTGGTCGGGCCGCTTCTGGGCCCGAACCCGCTGCAACTTCGACGCATCCGGCCTTGGCTCCTGTGCCACGGCCGATTGCGGTTCTGGACTGGAGTGCAACGGAGCGGGAGCCGCTCCACCTGCCACCCTAGCCGAGTTCACGCTCGGCTCCGGCTCGGGTGGCACGCTGGATTTTTATGACGTCAGCCTGGTTGATGGTTATAACTTGCCTATGATCGTGGAGGGGAGTGGGGGATCAGGTACGTGCGCCACCACCGGGTGTGCGTCGGACCTCAACCGGAGTTGTCCGAATGAGCTCAAGGTCGTCGACGGCGACGCCTGTAAGAGCGCGTGCGGCGCGTTTGGGACGCCGGAGTATTGTTGTAACGGCGCGTATGCTTCACCTGACACATGCAAGCCGTCCATGTACTCGCAGGTGTTTAAGTCGGCTTGTCCCAAGTCGTATAGCTACGCGTATGATGATGCCTCGAGTACGTTTACATGTACCGGGGCGGATTATACAATCACATTTTGTGCTTCACTTCTTCCTAGTGTAAAGTCCGCAACAAATTCTTCTCCACAAATATCAGGTGCCGGGTCAGGGTCGGAATCGGAAGGCGGCACGTCATTACTAGCAAGTTTGGCAACCGGAGACTCAACTAAAGCCCATTCTTCAATTGCTTTCCACAGTGTGCTGATTTTGGTTGTCTCCTTGGCTCTCTCATTTTTACGATTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

309

Amino Acids

31.72

Weight (kDa)

5.02

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 241 5.5e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AarI CACCTGC 2 cut(s) 337, 613
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 2 cut(s) 337, 613
AccB1I GGYRCC 1 cut(s) 779
AccBSI CCGCTC 2 cut(s) 314, 323
AccI GTMKAC 1 cut(s) 516
AccII CGCG 4 cut(s) 539, 548, 581, 662
AclWI GGATC 1 cut(s) 451
AcoI YGGCCR 2 cut(s) 113, 279
AcsI RAATTY 2 cut(s) 120, 757
AcyI GRCGYC 3 cut(s) 390, 525, 557
AdeI CACNNNGTG 2 cut(s) 468, 880
AfaI GTAC 4 cut(s) 451, 617, 682, 694
AfiI CCNNNNNNNGG 3 cut(s) 226, 465, 789
AflIII ACRYGT 2 cut(s) 660, 689
AgsI TTSAA 1 cut(s) 864
AjiI CACGTC 1 cut(s) 813
AjnI CCWGG 2 cut(s) 115, 396
AluBI AGCT 6 cut(s) 74, 148, 169, 200, 505, 657
AluI AGCT 6 cut(s) 74, 148, 169, 200, 505, 657
Alw21I GWGCWC 2 cut(s) 171, 507
Alw26I GTCTC 2 cut(s) 834, 901
AlwI GGATC 1 cut(s) 451
Ama87I CYCGRG 2 cut(s) 364, 676
AoxI GGCC 5 cut(s) 113, 217, 228, 259, 279
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 120, 757
AspLEI GCGC 5 cut(s) 134, 458, 539, 548, 581
AspS9I GGNCC 4 cut(s) 217, 228, 229, 478
AsuC2I CCSGG 3 cut(s) 466, 697, 784
AsuHPI GGTGA 4 cut(s) 46, 73, 163, 582
AvaI CYCGRG 2 cut(s) 364, 676
AvaII GGWCC 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 115
BanI GGYRCC 1 cut(s) 779
BanII GRGCYC 3 cut(s) 171, 232, 507
Bbv12I GWGCWC 2 cut(s) 171, 507
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 398
BceAI ACGGC 4 cut(s) 294, 535, 592, 592
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 2 cut(s) 117, 398
BcnI CCSGG 3 cut(s) 466, 697, 784
BcoDI GTCTC 2 cut(s) 834, 901
BfaI CTAG 4 cut(s) 125, 338, 738, 821
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 2 cut(s) 337, 613
BisI GCNGC 6 cut(s) 181, 220, 241, 321, 544, 808
BlsI GCNGC 6 cut(s) 182, 221, 242, 322, 545, 809
Bme1390I CCNGG 5 cut(s) 117, 398, 466, 697, 784
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 2 cut(s) 364, 676
BmgBI CACGTC 1 cut(s) 813
BmgT120I GGNCC 4 cut(s) 217, 228, 229, 478
BmiI GGNNCC 6 cut(s) 184, 230, 268, 319, 358, 781
BmrFI CCNGG 5 cut(s) 117, 398, 466, 697, 784
BmsI GCATC 2 cut(s) 263, 661
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 2 cut(s) 32, 144
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 3 cut(s) 466, 697, 784
BsaAI YACGTR 1 cut(s) 453
BsaHI GRCGYC 3 cut(s) 390, 525, 557
BsaJI CCNNGG 4 cut(s) 262, 276, 696, 900
BsaWI WCCGGW 2 cut(s) 486, 836
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 465, 789
Bse118I RCCGGY 2 cut(s) 134, 158
Bse1I ACTGG 2 cut(s) 211, 303
BseBI CCWGG 2 cut(s) 117, 398
BseDI CCNNGG 4 cut(s) 262, 276, 696, 900
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 3 cut(s) 226, 465, 789
BseMII CTCAG 1 cut(s) 46
BseNI ACTGG 2 cut(s) 211, 303
BseSI GKGCMC 1 cut(s) 232
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 227
Bsh1236I CGCG 4 cut(s) 539, 548, 581, 662
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 5 cut(s) 115, 219, 230, 261, 281
BshNI GGYRCC 1 cut(s) 779
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 171, 507
BsiHKCI CYCGRG 2 cut(s) 364, 676
BslFI GGGAC 2 cut(s) 568, 627
BslI CCNNNNNNNGG 3 cut(s) 226, 465, 789
BsmAI GTCTC 2 cut(s) 834, 901
BsmFI GGGAC 2 cut(s) 568, 627
BsnI GGCC 5 cut(s) 115, 219, 230, 261, 281
BsoBI CYCGRG 2 cut(s) 364, 676
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 3 cut(s) 171, 232, 507
Bsp143I GATC 2 cut(s) 423, 443
BspANI GGCC 5 cut(s) 115, 219, 230, 261, 281
BspCNI CTCAG 1 cut(s) 45
BspFNI CGCG 4 cut(s) 539, 548, 581, 662
BspLI GGNNCC 6 cut(s) 184, 230, 268, 319, 358, 781
BspMI ACCTGC 2 cut(s) 337, 613
BspPI GGATC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 779
BsrBI CCGCTC 2 cut(s) 314, 323
BsrFI RCCGGY 2 cut(s) 134, 158
BsrI ACTGG 2 cut(s) 211, 303
BssAI RCCGGY 2 cut(s) 134, 158
BssECI CCNNGG 4 cut(s) 262, 276, 696, 900
BssMI GATC 2 cut(s) 423, 443
BssNI GRCGYC 3 cut(s) 390, 525, 557
BssT1I CCWWGG 2 cut(s) 262, 900
Bst2UI CCWGG 2 cut(s) 117, 398
Bst4CI ACNGT 2 cut(s) 109, 878
BstACI GRCGYC 3 cut(s) 390, 525, 557
BstBAI YACGTR 1 cut(s) 453
BstC8I GCNNGC 4 cut(s) 130, 374, 541, 605
BstDEI CTNAG 2 cut(s) 32, 144
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 4 cut(s) 539, 548, 581, 662
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 5 cut(s) 134, 458, 539, 548, 581
BstKTI GATC 2 cut(s) 426, 446
BstMAI GTCTC 2 cut(s) 834, 901
BstMBI GATC 2 cut(s) 423, 443
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 9 cut(s) 186, 216, 320, 329, 338, 369, 543, 545, 830
BstNI CCWGG 2 cut(s) 117, 398
BstNSI RCATGY 2 cut(s) 603, 693
BstSCI CCNGG 5 cut(s) 115, 396, 464, 695, 782
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 4 cut(s) 539, 548, 581, 662
BstV1I GCAGC 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 210
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 5 cut(s) 115, 219, 230, 261, 281
BtgI CCRYGG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 813
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 883
BveI ACCTGC 2 cut(s) 337, 613
Cac8I GCNNGC 4 cut(s) 130, 374, 541, 605
CfoI GCGC 5 cut(s) 134, 458, 539, 548, 581
Cfr10I RCCGGY 2 cut(s) 134, 158
Cfr13I GGNCC 4 cut(s) 217, 228, 229, 478
CseI GACGC 4 cut(s) 260, 462, 533, 565
Csp6I GTAC 4 cut(s) 450, 616, 681, 693
CviAII CATG 3 cut(s) 600, 613, 690
CviQI GTAC 4 cut(s) 450, 616, 681, 693
DdeI CTNAG 2 cut(s) 32, 144
DpnI GATC 2 cut(s) 425, 445
DpnII GATC 2 cut(s) 423, 443
DraIII CACNNNGTG 2 cut(s) 468, 880
EaeI YGGCCR 2 cut(s) 113, 279
EagI CGGCCG 1 cut(s) 279
EciI GGCGGA 1 cut(s) 716
Ecl136II GAGCTC 2 cut(s) 169, 505
EclXI CGGCCG 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 262, 900
Eco24I GRGCYC 3 cut(s) 171, 232, 507
Eco47I GGWCC 1 cut(s) 478
Eco52I CGGCCG 1 cut(s) 279
Eco53kI GAGCTC 2 cut(s) 169, 505
Eco88I CYCGRG 2 cut(s) 364, 676
EcoICRI GAGCTC 2 cut(s) 169, 505
EcoRI GAATTC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 115, 396
EcoT14I CCWWGG 2 cut(s) 262, 900
EcoT38I GRGCYC 3 cut(s) 171, 232, 507
ErhI CCWWGG 2 cut(s) 262, 900
FaeI CATG 3 cut(s) 603, 616, 693
FaqI GGGAC 2 cut(s) 568, 627
FatI CATG 3 cut(s) 599, 612, 689
FauI CCCGC 3 cut(s) 194, 245, 307
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 6 cut(s) 181, 220, 241, 321, 544, 808
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 3 cut(s) 171, 232, 507
Fsp4HI GCNGC 6 cut(s) 181, 220, 241, 321, 544, 808
FspBI CTAG 4 cut(s) 125, 338, 738, 821
GlaI GCGC 5 cut(s) 133, 457, 538, 547, 580
GluI GCNGC 6 cut(s) 181, 220, 241, 321, 544, 808
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 5 cut(s) 115, 219, 230, 261, 281
HgaI GACGC 4 cut(s) 260, 462, 533, 565
HhaI GCGC 5 cut(s) 134, 458, 539, 548, 581
Hin1I GRCGYC 3 cut(s) 390, 525, 557
Hin1II CATG 3 cut(s) 603, 616, 693
Hin6I GCGC 5 cut(s) 132, 456, 537, 546, 579
HinP1I GCGC 5 cut(s) 132, 456, 537, 546, 579
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 2 cut(s) 797, 842
HphI GGTGA 4 cut(s) 46, 73, 163, 582
Hpy166II GTNNAC 4 cut(s) 91, 348, 517, 687
Hpy188I TCNGA 4 cut(s) 478, 498, 796, 802
Hpy188III TCNNGA 2 cut(s) 69, 294
Hpy8I GTNNAC 4 cut(s) 91, 348, 517, 687
Hpy99I CGWCG 5 cut(s) 254, 478, 518, 521, 527
HpyAV CCTTC 3 cut(s) 94, 202, 797
HpyCH4III ACNGT 2 cut(s) 109, 878
HpyCH4IV ACGT 4 cut(s) 390, 452, 683, 812
HpyCH4V TGCA 4 cut(s) 243, 306, 603, 925
HpyF10VI GCNNNNNNNGC 9 cut(s) 186, 216, 320, 329, 338, 369, 543, 545, 830
HpyF3I CTNAG 2 cut(s) 32, 144
HpySE526I ACGT 4 cut(s) 390, 452, 683, 812
Hsp92I GRCGYC 3 cut(s) 390, 525, 557
Hsp92II CATG 3 cut(s) 603, 616, 693
HspAI GCGC 5 cut(s) 132, 456, 537, 546, 579
Kzo9I GATC 2 cut(s) 423, 443
LmnI GCTCC 8 cut(s) 71, 188, 205, 272, 311, 317, 328, 362
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 2 cut(s) 263, 661
MaeI CTAG 4 cut(s) 125, 338, 738, 821
MaeII ACGT 4 cut(s) 390, 452, 683, 812
MaeIII GTNAC 2 cut(s) 98, 572
MalI GATC 2 cut(s) 425, 445
MbiI CCGCTC 2 cut(s) 314, 323
MboI GATC 2 cut(s) 423, 443
MboII GAAGA 3 cut(s) 725, 753, 852
MfeI CAATTG 1 cut(s) 864
MhlI GDGCHC 3 cut(s) 171, 232, 507
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 3 cut(s) 120, 757, 864
MluI ACGCGT 1 cut(s) 660
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 3 cut(s) 227, 456, 774
MnlI CCTC 5 cut(s) 41, 47, 424, 491, 685
Mox20I TGGCCA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 115
MseI TTAA 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 240
MspR9I CCNGG 5 cut(s) 117, 398, 466, 697, 784
MunI CAATTG 1 cut(s) 864
MvaI CCWGG 2 cut(s) 117, 398
MvnI CGCG 4 cut(s) 539, 548, 581, 662
MwoI GCNNNNNNNGC 9 cut(s) 186, 216, 320, 329, 338, 369, 543, 545, 830
NciI CCSGG 3 cut(s) 466, 697, 784
NdeII GATC 2 cut(s) 423, 443
NlaIII CATG 3 cut(s) 603, 616, 693
NlaIV GGNNCC 6 cut(s) 184, 230, 268, 319, 358, 781
NmeAIII GCCGAG 2 cut(s) 333, 367
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 2 cut(s) 603, 693
PaeR7I CTCGAG 1 cut(s) 676
PaqCI CACCTGC 2 cut(s) 337, 613
PciI ACATGT 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PfeI GAWTC 1 cut(s) 797
PkrI GCNGC 6 cut(s) 182, 221, 242, 322, 545, 809
PleI GAGTC 1 cut(s) 836
PpsI GAGTC 1 cut(s) 836
Ppu21I YACGTR 1 cut(s) 453
PscI ACATGT 1 cut(s) 689
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 2 cut(s) 171, 507
Psp6I CCWGG 2 cut(s) 115, 396
PspGI CCWGG 2 cut(s) 115, 396
PspN4I GGNNCC 6 cut(s) 184, 230, 268, 319, 358, 781
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 4 cut(s) 217, 228, 229, 478
PspXI VCTCGAGB 1 cut(s) 676
RsaI GTAC 4 cut(s) 451, 617, 682, 694
RsaNI GTAC 4 cut(s) 450, 616, 681, 693
SacI GAGCTC 2 cut(s) 171, 507
SalI GTCGAC 1 cut(s) 515
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 6 cut(s) 181, 220, 241, 321, 544, 808
Sau3AI GATC 2 cut(s) 423, 443
Sau96I GGNCC 4 cut(s) 217, 228, 229, 478
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 5 cut(s) 117, 398, 466, 697, 784
SduI GDGCHC 3 cut(s) 171, 232, 507
SfaNI GCATC 2 cut(s) 263, 661
Sfr274I CTCGAG 1 cut(s) 676
SgrDI CGTCGACG 1 cut(s) 515
SinI GGWCC 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 676
SmlI CTYRAG 2 cut(s) 506, 676
SmoI CTYRAG 2 cut(s) 506, 676
Sse9I AATT 3 cut(s) 120, 757, 864
SspMI CTAG 4 cut(s) 125, 338, 738, 821
SstI GAGCTC 2 cut(s) 171, 507
StyD4I CCNGG 5 cut(s) 115, 396, 464, 695, 782
StyI CCWWGG 2 cut(s) 262, 900
TaaI ACNGT 2 cut(s) 109, 878
TaiI ACGT 4 cut(s) 393, 455, 686, 815
TaqI TCGA 3 cut(s) 249, 516, 677
TasI AATT 3 cut(s) 120, 757, 864
TatI WGTACW 1 cut(s) 615
TauI GCSGC 5 cut(s) 183, 222, 323, 546, 810
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 883
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 883
VpaK11BI GGWCC 1 cut(s) 478
XapI RAATTY 2 cut(s) 120, 757
XceI RCATGY 2 cut(s) 603, 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 4 cut(s) 125, 338, 738, 821
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.