Rh2DG132500

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003319
Physical Location & Seq
Reverse (-)
11143057 .. 11144868
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG132500.1

Sequence Viewer

Length: 912 bp
ATGATATTAAATATGTTGCTCTGTTTTTGTTTTTGGTTTTGGTTTGCAGGGGTATCAGGAGCTACATTCACCTTCGTAAACAAATGTGACTTCACGGTATGGCCAGGAATTCTAGCCAGCGCCGGTAGTCCTAAGCTGGACAGCACCGGCTTTGAGCTCACCAAAGGCGGCTCCCGCACCTTCCAAGCTCCAACTGGCTGGTCGGGCCGCTTCTGGGCCCGAACCCGCTGCAACTTCGACGCATCCGGCCTTGGCTCGTGTGCCACGGCCGATTGCGGTTCGGGACTGGAGTGCAACGGAGCGGGAGCCGCTCCACCTGCCACCCTAGCCGAGTTCACGCTCGGCTCCGGCGGCACGCTGGATTTTTATGACGTCAGCCTGGTTGATGGTTATAACTTGCCTATGATCGTGGAGGGGAGTGGGGGATCAGGTACGTGTGCCACCACCGGGTGTGCGTCGGACCTCAACCGGAGTTGTCCGAATGAGCTCAAGGTCGTCGACGGCGACGCCTGTAAGAGCGCGTGCGACGCGTTTGGGACGCCGGAGTATTGTTGTAACGGCGCGTATGCTTCACCTGACACATGCAAGCCGTCCATGTACTCGCAGGTGTTTAAGTCGGCTTGTCCCAAGTCGTATAGCTACGCGTATGATGATGCCTCGAGTACGTTTACATGTACCGGGGCGGATTATACAATCACATTTTGTGCTTCACTTCTTCCTAGTGTAAAGTCCGCAACAAATTCTTCTCCACAAATATCAGGTACTGGGTCAGGGTCGGAATCGGAAGGCGGCACGTCATTGCTAGCAAGTTTGGCAACCGGAGACTCAACTAAAACCCATTCTTCAATTGCTTTCCACAGTGTGTTGATTTTGGTTGTCTCCTTGGCTCTCTCATTTTTACGATTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

303

Amino Acids

31.33

Weight (kDa)

4.68

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 27 - 235 2.9e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AarI CACCTGC 2 cut(s) 325, 595
AatII GACGTC 1 cut(s) 375
Acc36I ACCTGC 2 cut(s) 325, 595
AccBSI CCGCTC 2 cut(s) 302, 311
AccI GTMKAC 1 cut(s) 498
AccII CGCG 4 cut(s) 521, 530, 563, 644
AclWI GGATC 1 cut(s) 433
AcoI YGGCCR 2 cut(s) 101, 267
AcsI RAATTY 2 cut(s) 108, 739
AcyI GRCGYC 3 cut(s) 372, 507, 539
AdeI CACNNNGTG 2 cut(s) 450, 862
AfaI GTAC 5 cut(s) 433, 599, 664, 676, 763
AfiI CCNNNNNNNGG 2 cut(s) 214, 447
AflIII ACRYGT 4 cut(s) 434, 528, 642, 671
AgsI TTSAA 1 cut(s) 846
AjiI CACGTC 1 cut(s) 795
AjnI CCWGG 2 cut(s) 103, 378
AluBI AGCT 6 cut(s) 62, 136, 157, 188, 487, 639
AluI AGCT 6 cut(s) 62, 136, 157, 188, 487, 639
Alw21I GWGCWC 2 cut(s) 159, 489
Alw26I GTCTC 2 cut(s) 816, 883
AlwI GGATC 1 cut(s) 433
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 1 cut(s) 658
AoxI GGCC 5 cut(s) 101, 205, 216, 247, 267
ApaI GGGCCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 2 cut(s) 108, 739
AspLEI GCGC 3 cut(s) 122, 521, 563
AspS9I GGNCC 4 cut(s) 205, 216, 217, 460
AsuC2I CCSGG 2 cut(s) 448, 679
AsuHPI GGTGA 3 cut(s) 61, 151, 564
AsuNHI GCTAGC 1 cut(s) 802
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 103
BanII GRGCYC 3 cut(s) 159, 220, 489
BauI CACGAG 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 159, 489
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 380
BceAI ACGGC 4 cut(s) 282, 517, 574, 574
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 2 cut(s) 105, 380
BcnI CCSGG 2 cut(s) 448, 679
BcoDI GTCTC 2 cut(s) 816, 883
BfaI CTAG 4 cut(s) 113, 326, 720, 803
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 2 cut(s) 325, 595
BisI GCNGC 6 cut(s) 169, 208, 229, 309, 352, 790
BlsI GCNGC 6 cut(s) 170, 209, 230, 310, 353, 791
Bme1390I CCNGG 4 cut(s) 105, 380, 448, 679
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 658
BmgBI CACGTC 1 cut(s) 795
BmgT120I GGNCC 4 cut(s) 205, 216, 217, 460
BmiI GGNNCC 4 cut(s) 172, 218, 307, 346
BmrFI CCNGG 4 cut(s) 105, 380, 448, 679
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 251, 643
BmtI GCTAGC 1 cut(s) 806
BmuI ACTGGG 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 2 cut(s) 448, 679
BsaAI YACGTR 1 cut(s) 435
BsaHI GRCGYC 3 cut(s) 372, 507, 539
BsaJI CCNNGG 4 cut(s) 250, 264, 678, 882
BsaWI WCCGGW 2 cut(s) 468, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 447
Bse118I RCCGGY 2 cut(s) 122, 146
Bse1I ACTGG 3 cut(s) 199, 291, 769
Bse3DI GCAATG 1 cut(s) 797
BseBI CCWGG 2 cut(s) 105, 380
BseDI CCNNGG 4 cut(s) 250, 264, 678, 882
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 214, 447
BseMI GCAATG 1 cut(s) 797
BseNI ACTGG 3 cut(s) 199, 291, 769
BseSI GKGCMC 1 cut(s) 220
BseX3I CGGCCG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 215
Bsh1236I CGCG 4 cut(s) 521, 530, 563, 644
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 5 cut(s) 103, 207, 218, 249, 269
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 2 cut(s) 159, 489
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 9 cut(s) 123, 147, 246, 348, 447, 469, 542, 678, 819
BslFI GGGAC 3 cut(s) 297, 550, 609
BslI CCNNNNNNNGG 2 cut(s) 214, 447
BsmAI GTCTC 2 cut(s) 816, 883
BsmFI GGGAC 3 cut(s) 297, 550, 609
BsnI GGCC 5 cut(s) 103, 207, 218, 249, 269
BsoBI CYCGRG 1 cut(s) 658
Bsp120I GGGCCC 1 cut(s) 216
Bsp1286I GDGCHC 3 cut(s) 159, 220, 489
Bsp143I GATC 2 cut(s) 405, 425
BspANI GGCC 5 cut(s) 103, 207, 218, 249, 269
BspFNI CGCG 4 cut(s) 521, 530, 563, 644
BspLI GGNNCC 4 cut(s) 172, 218, 307, 346
BspMI ACCTGC 2 cut(s) 325, 595
BspOI GCTAGC 1 cut(s) 806
BspPI GGATC 1 cut(s) 433
BsrBI CCGCTC 2 cut(s) 302, 311
BsrDI GCAATG 1 cut(s) 797
BsrFI RCCGGY 2 cut(s) 122, 146
BsrI ACTGG 3 cut(s) 199, 291, 769
BssAI RCCGGY 2 cut(s) 122, 146
BssECI CCNNGG 4 cut(s) 250, 264, 678, 882
BssMI GATC 2 cut(s) 405, 425
BssNI GRCGYC 3 cut(s) 372, 507, 539
BssSI CACGAG 1 cut(s) 256
BssT1I CCWWGG 2 cut(s) 250, 882
Bst2BI CACGAG 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 105, 380
Bst4CI ACNGT 2 cut(s) 97, 860
BstACI GRCGYC 3 cut(s) 372, 507, 539
BstBAI YACGTR 1 cut(s) 435
BstC8I GCNNGC 5 cut(s) 118, 356, 523, 587, 804
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 242
BstFNI CGCG 4 cut(s) 521, 530, 563, 644
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 3 cut(s) 122, 521, 563
BstKTI GATC 2 cut(s) 408, 428
BstMAI GTCTC 2 cut(s) 816, 883
BstMBI GATC 2 cut(s) 405, 425
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 8 cut(s) 174, 204, 308, 317, 326, 351, 527, 812
BstNI CCWGG 2 cut(s) 105, 380
BstNSI RCATGY 2 cut(s) 585, 675
BstSCI CCNGG 4 cut(s) 103, 378, 446, 677
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 4 cut(s) 521, 530, 563, 644
BstV1I GCAGC 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 198
BstZI CGGCCG 1 cut(s) 267
BsuRI GGCC 5 cut(s) 103, 207, 218, 249, 269
BtgI CCRYGG 1 cut(s) 264
BtrI CACGTC 1 cut(s) 795
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 865
BveI ACCTGC 2 cut(s) 325, 595
Cac8I GCNNGC 5 cut(s) 118, 356, 523, 587, 804
CaiI CAGNNNCTG 1 cut(s) 764
CfoI GCGC 3 cut(s) 122, 521, 563
Cfr10I RCCGGY 2 cut(s) 122, 146
Cfr13I GGNCC 4 cut(s) 205, 216, 217, 460
CseI GACGC 5 cut(s) 248, 444, 515, 536, 547
Csp6I GTAC 5 cut(s) 432, 598, 663, 675, 762
CviAII CATG 3 cut(s) 582, 595, 672
CviQI GTAC 5 cut(s) 432, 598, 663, 675, 762
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 407, 427
DpnII GATC 2 cut(s) 405, 425
DraIII CACNNNGTG 2 cut(s) 450, 862
EaeI YGGCCR 2 cut(s) 101, 267
EagI CGGCCG 1 cut(s) 267
EciI GGCGGA 1 cut(s) 698
Ecl136II GAGCTC 2 cut(s) 157, 487
EclXI CGGCCG 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 250, 882
Eco24I GRGCYC 3 cut(s) 159, 220, 489
Eco47I GGWCC 1 cut(s) 460
Eco52I CGGCCG 1 cut(s) 267
Eco53kI GAGCTC 2 cut(s) 157, 487
Eco88I CYCGRG 1 cut(s) 658
EcoICRI GAGCTC 2 cut(s) 157, 487
EcoRI GAATTC 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 103, 378
EcoT14I CCWWGG 2 cut(s) 250, 882
EcoT38I GRGCYC 3 cut(s) 159, 220, 489
ErhI CCWWGG 2 cut(s) 250, 882
FaeI CATG 3 cut(s) 585, 598, 675
FaqI GGGAC 3 cut(s) 297, 550, 609
FatI CATG 3 cut(s) 581, 594, 671
FauI CCCGC 3 cut(s) 182, 233, 295
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 6 cut(s) 169, 208, 229, 309, 352, 790
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 3 cut(s) 159, 220, 489
Fsp4HI GCNGC 6 cut(s) 169, 208, 229, 309, 352, 790
FspBI CTAG 4 cut(s) 113, 326, 720, 803
GlaI GCGC 3 cut(s) 121, 520, 562
GluI GCNGC 6 cut(s) 169, 208, 229, 309, 352, 790
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 5 cut(s) 103, 207, 218, 249, 269
HapII CCGG 9 cut(s) 123, 147, 246, 348, 447, 469, 542, 678, 819
HgaI GACGC 5 cut(s) 248, 444, 515, 536, 547
HhaI GCGC 3 cut(s) 122, 521, 563
Hin1I GRCGYC 3 cut(s) 372, 507, 539
Hin1II CATG 3 cut(s) 585, 598, 675
Hin6I GCGC 3 cut(s) 120, 519, 561
HinP1I GCGC 3 cut(s) 120, 519, 561
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 2 cut(s) 779, 824
HpaII CCGG 9 cut(s) 123, 147, 246, 348, 447, 469, 542, 678, 819
HphI GGTGA 3 cut(s) 61, 151, 564
Hpy166II GTNNAC 4 cut(s) 79, 336, 499, 669
Hpy188I TCNGA 4 cut(s) 460, 480, 778, 784
Hpy188III TCNNGA 2 cut(s) 57, 282
Hpy8I GTNNAC 4 cut(s) 79, 336, 499, 669
Hpy99I CGWCG 6 cut(s) 242, 460, 500, 503, 509, 530
HpyAV CCTTC 3 cut(s) 82, 190, 779
HpyCH4III ACNGT 2 cut(s) 97, 860
HpyCH4IV ACGT 4 cut(s) 372, 434, 665, 794
HpyCH4V TGCA 5 cut(s) 47, 231, 294, 585, 907
HpyF10VI GCNNNNNNNGC 8 cut(s) 174, 204, 308, 317, 326, 351, 527, 812
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 4 cut(s) 372, 434, 665, 794
Hsp92I GRCGYC 3 cut(s) 372, 507, 539
Hsp92II CATG 3 cut(s) 585, 598, 675
HspAI GCGC 3 cut(s) 120, 519, 561
Kzo9I GATC 2 cut(s) 405, 425
LmnI GCTCC 7 cut(s) 59, 176, 193, 299, 305, 316, 350
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 2 cut(s) 251, 643
MaeI CTAG 4 cut(s) 113, 326, 720, 803
MaeII ACGT 4 cut(s) 372, 434, 665, 794
MaeIII GTNAC 2 cut(s) 86, 554
MalI GATC 2 cut(s) 407, 427
MbiI CCGCTC 2 cut(s) 302, 311
MboI GATC 2 cut(s) 405, 425
MboII GAAGA 3 cut(s) 707, 735, 834
MfeI CAATTG 1 cut(s) 846
MhlI GDGCHC 3 cut(s) 159, 220, 489
MlsI TGGCCA 1 cut(s) 103
MluCI AATT 3 cut(s) 108, 739, 846
MluI ACGCGT 2 cut(s) 528, 642
MluNI TGGCCA 1 cut(s) 103
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 3 cut(s) 215, 438, 756
MnlI CCTC 3 cut(s) 406, 473, 667
Mox20I TGGCCA 1 cut(s) 103
MscI TGGCCA 1 cut(s) 103
MseI TTAA 2 cut(s) 8, 612
Msp20I TGGCCA 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 9 cut(s) 123, 147, 246, 348, 447, 469, 542, 678, 819
MspR9I CCNGG 4 cut(s) 105, 380, 448, 679
MunI CAATTG 1 cut(s) 846
MvaI CCWGG 2 cut(s) 105, 380
MvnI CGCG 4 cut(s) 521, 530, 563, 644
MwoI GCNNNNNNNGC 8 cut(s) 174, 204, 308, 317, 326, 351, 527, 812
NciI CCSGG 2 cut(s) 448, 679
NdeII GATC 2 cut(s) 405, 425
NheI GCTAGC 1 cut(s) 802
NlaIII CATG 3 cut(s) 585, 598, 675
NlaIV GGNNCC 4 cut(s) 172, 218, 307, 346
NmeAIII GCCGAG 2 cut(s) 321, 355
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 2 cut(s) 585, 675
PaeR7I CTCGAG 1 cut(s) 658
PaqCI CACCTGC 2 cut(s) 325, 595
PciI ACATGT 1 cut(s) 671
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PfeI GAWTC 1 cut(s) 779
PkrI GCNGC 6 cut(s) 170, 209, 230, 310, 353, 791
PleI GAGTC 1 cut(s) 818
PpsI GAGTC 1 cut(s) 818
Ppu21I YACGTR 1 cut(s) 435
PscI ACATGT 1 cut(s) 671
PsiI TTATAA 1 cut(s) 393
Psp124BI GAGCTC 2 cut(s) 159, 489
Psp6I CCWGG 2 cut(s) 103, 378
PspGI CCWGG 2 cut(s) 103, 378
PspN4I GGNNCC 4 cut(s) 172, 218, 307, 346
PspOMI GGGCCC 1 cut(s) 216
PspPI GGNCC 4 cut(s) 205, 216, 217, 460
PspXI VCTCGAGB 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 764
RsaI GTAC 5 cut(s) 433, 599, 664, 676, 763
RsaNI GTAC 5 cut(s) 432, 598, 663, 675, 762
SacI GAGCTC 2 cut(s) 159, 489
SalI GTCGAC 1 cut(s) 497
SaqAI TTAA 2 cut(s) 8, 612
SatI GCNGC 6 cut(s) 169, 208, 229, 309, 352, 790
Sau3AI GATC 2 cut(s) 405, 425
Sau96I GGNCC 4 cut(s) 205, 216, 217, 460
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 4 cut(s) 105, 380, 448, 679
SduI GDGCHC 3 cut(s) 159, 220, 489
SfaNI GCATC 2 cut(s) 251, 643
Sfr274I CTCGAG 1 cut(s) 658
SgrDI CGTCGACG 1 cut(s) 497
SinI GGWCC 1 cut(s) 460
SlaI CTCGAG 1 cut(s) 658
SmlI CTYRAG 2 cut(s) 488, 658
SmoI CTYRAG 2 cut(s) 488, 658
Sse9I AATT 3 cut(s) 108, 739, 846
SspMI CTAG 4 cut(s) 113, 326, 720, 803
SstI GAGCTC 2 cut(s) 159, 489
StyD4I CCNGG 4 cut(s) 103, 378, 446, 677
StyI CCWWGG 2 cut(s) 250, 882
TaaI ACNGT 2 cut(s) 97, 860
TaiI ACGT 4 cut(s) 375, 437, 668, 797
TaqI TCGA 3 cut(s) 237, 498, 659
TasI AATT 3 cut(s) 108, 739, 846
TatI WGTACW 1 cut(s) 597
TauI GCSGC 5 cut(s) 171, 210, 311, 354, 792
TfiI GAWTC 1 cut(s) 779
Tru1I TTAA 2 cut(s) 8, 612
Tru9I TTAA 2 cut(s) 8, 612
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 865
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 2 cut(s) 108, 739
XceI RCATGY 2 cut(s) 585, 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 4 cut(s) 113, 326, 720, 803
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.