AT4G38660

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003319
Physical Location & Seq
Reverse (-)
18066030 .. 18068293
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38660.2

Sequence Viewer

Length: 1038 bp
ATGATGAATCTTTCTTCTCGTCGCGCCTCTTCCACTCTCACATTGAGCTTCACTGTTCTCCTTTTAGCTTCCACAGGTTCGTATGGCTCAACATTCACATTCGCTAATCGGTGCGGCTACACCGTATGGCCTGGAATCCTATCGAATGCTGGCTCACCTACTCTCTCCACCACCGGATTTGAGCTCCCTAAAGGCACCTCTCGCTCTCTCCAAGCTCCCACCGGTTGGTCCGGTCGATTCTGGGCTCGTACCGGTTGCAAGTTCGACAGTTCTGGCTCCGGTACATGCAAAACCGGTGACTGCGGCTCCAACGCTGTCGAATGCGCCGGGCTTGGTGCCGCACCGCCTGTAACTCTCGCGGAGTTCACTCTAGGCACTGGCGGCGATGATTTCTACGACGTTAGTCTCGTCGACGGTTACAACATTCCGATGATAGTTGAAGTCGCCGGTGGATCTGGGCAGTGCGCTTCTACCGGATGCACTACGGATCTTAACATTCAGTGCCCTGCTGAGCTGCGTTTCGGCGACGGAGACGCTTGCAAAAGCGCGTGTTTAGCGTTTCGGAGTCCTGAATACTGTTGCAGCGGCGCGTATGCTACACCTTCTAGTTGTCGGCCTTCCGTGTATTCGGAGATGTTTAAAGCCGCGTGTCCTCGCTCCTATAGCTACGCTTACGACGATGCTACGAGCACTTTCACTTGCGCCGGTGGAGATTATACGGTGACGTTTTGCCCTTCTTCCCCTAGTCAAAAATCGACTAGCTACTCCCCTCCAGTGACAGACTCGTCGTCGACCTCACAAGGTTCCGATCCTGTGCCTGGTTCTGATACTGGTTACGCTGGTCAGGGTCAACAGACTCCAGGTCAAGGTAATGTGTACGGGTCACAGGGGACTGGGTCGGAGATGGGTACGGGTGAGACCATGTTACAAGACGGATCATGGATGGCTGGTTTGGCCATGGGAGAGGCAAGCAGACCAGCCGGCGTTTCATTGACAGTGCTGCTTGCTGCATTTACTTTTCCGTTTATTTTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

345

Amino Acids

35.44

Weight (kDa)

4.5

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 14 - 223 7e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 784
AccB1I GGYRCC 2 cut(s) 194, 335
AccB7I CCANNNNNTGG 1 cut(s) 225
AccI GTMKAC 2 cut(s) 411, 791
AccII CGCG 5 cut(s) 24, 359, 548, 590, 647
AciI CCGC 8 cut(s) 114, 303, 339, 344, 359, 381, 585, 645
AclWI GGATC 4 cut(s) 460, 495, 803, 943
AcoI YGGCCR 1 cut(s) 954
AfaI GTAC 4 cut(s) 250, 283, 878, 910
AfiI CCNNNNNNNGG 3 cut(s) 225, 818, 866
AgeI ACCGGT 3 cut(s) 221, 251, 293
AgsI TTSAA 1 cut(s) 440
AhdI GACNNNNNGTC 2 cut(s) 787, 861
AjnI CCWGG 3 cut(s) 130, 817, 859
AluBI AGCT 7 cut(s) 48, 68, 184, 215, 514, 666, 762
AluI AGCT 7 cut(s) 48, 68, 184, 215, 514, 666, 762
Alw21I GWGCWC 2 cut(s) 186, 692
Alw26I GTCTC 3 cut(s) 410, 525, 911
AlwI GGATC 4 cut(s) 460, 495, 803, 943
AoxI GGCC 3 cut(s) 128, 614, 954
ApeKI GCWGC 4 cut(s) 514, 582, 1000, 1007
AsiGI ACCGGT 3 cut(s) 221, 251, 293
AspLEI GCGC 6 cut(s) 26, 326, 467, 548, 590, 704
AspS9I GGNCC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 4 cut(s) 147, 308, 733, 926
AvaII GGWCC 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 506
BalI TGGCCA 1 cut(s) 956
BanI GGYRCC 2 cut(s) 194, 335
BanII GRGCYC 2 cut(s) 186, 247
Bbv12I GWGCWC 2 cut(s) 186, 692
BbvI GCAGC 4 cut(s) 501, 594, 987, 994
BccI CCATC 2 cut(s) 898, 937
BciT130I CCWGG 3 cut(s) 132, 819, 861
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 3 cut(s) 410, 525, 911
BfaI CTAG 4 cut(s) 371, 606, 744, 759
BfmI CTRYAG 1 cut(s) 661
BlpI GCTNAGC 1 cut(s) 510
Bme1390I CCNGG 4 cut(s) 132, 328, 819, 861
Bme18I GGWCC 1 cut(s) 228
BmeRI GACNNNNNGTC 2 cut(s) 787, 861
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 5 cut(s) 196, 277, 307, 337, 805
BmrFI CCNGG 4 cut(s) 132, 328, 819, 861
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 2 cut(s) 467, 670
BmuI ACTGGG 1 cut(s) 903
BoxI GACNNNNGTC 1 cut(s) 402
BpmI CTGGAG 2 cut(s) 756, 843
Bpu1102I GCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 328
BsaI GGTCTC 1 cut(s) 911
BsaJI CCNNGG 1 cut(s) 957
BsaWI WCCGGW 7 cut(s) 173, 221, 230, 251, 278, 293, 473
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 3 cut(s) 225, 818, 866
Bse118I RCCGGY 6 cut(s) 221, 251, 293, 446, 704, 980
Bse1I ACTGG 4 cut(s) 382, 773, 835, 898
BseBI CCWGG 3 cut(s) 132, 819, 861
BseDI CCNNGG 1 cut(s) 957
BseGI GGATG 2 cut(s) 482, 948
BseLI CCNNNNNNNGG 3 cut(s) 225, 818, 866
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 4 cut(s) 382, 773, 835, 898
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 4 cut(s) 501, 594, 987, 994
Bsh1236I CGCG 5 cut(s) 24, 359, 548, 590, 647
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 3 cut(s) 130, 616, 956
BshNI GGYRCC 2 cut(s) 194, 335
BshTI ACCGGT 3 cut(s) 221, 251, 293
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 186, 692
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 3 cut(s) 225, 818, 866
BsmAI GTCTC 3 cut(s) 410, 525, 911
BsmBI CGTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 904
BsmI GAATGC 2 cut(s) 151, 326
BsnI GGCC 3 cut(s) 130, 616, 956
Bso31I GGTCTC 1 cut(s) 911
Bsp1286I GDGCHC 4 cut(s) 186, 247, 506, 692
Bsp143I GATC 4 cut(s) 452, 487, 808, 935
Bsp1720I GCTNAGC 1 cut(s) 510
Bsp19I CCATGG 1 cut(s) 957
BspACI CCGC 8 cut(s) 114, 303, 339, 344, 359, 381, 585, 645
BspANI GGCC 3 cut(s) 130, 616, 956
BspCNI CTCAG 1 cut(s) 502
BspFNI CGCG 5 cut(s) 24, 359, 548, 590, 647
BspLI GGNNCC 5 cut(s) 196, 277, 307, 337, 805
BspPI GGATC 4 cut(s) 460, 495, 803, 943
BspT107I GGYRCC 2 cut(s) 194, 335
BspTNI GGTCTC 1 cut(s) 911
BsrFI RCCGGY 6 cut(s) 221, 251, 293, 446, 704, 980
BsrI ACTGG 4 cut(s) 382, 773, 835, 898
BssAI RCCGGY 6 cut(s) 221, 251, 293, 446, 704, 980
BssECI CCNNGG 1 cut(s) 957
BssMI GATC 4 cut(s) 452, 487, 808, 935
BssT1I CCWWGG 1 cut(s) 957
Bst2UI CCWGG 3 cut(s) 132, 819, 861
Bst4CI ACNGT 7 cut(s) 55, 124, 269, 416, 578, 721, 997
Bst6I CTCTTC 1 cut(s) 34
BstC8I GCNNGC 5 cut(s) 151, 538, 970, 982, 1005
BstDEI CTNAG 1 cut(s) 510
BstDSI CCRYGG 1 cut(s) 957
BstF5I GGATG 2 cut(s) 482, 948
BstFNI CGCG 5 cut(s) 24, 359, 548, 590, 647
BstHHI GCGC 6 cut(s) 26, 326, 467, 548, 590, 704
BstKTI GATC 4 cut(s) 455, 490, 811, 938
BstMAI GTCTC 3 cut(s) 410, 525, 911
BstMBI GATC 4 cut(s) 452, 487, 808, 935
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 5 cut(s) 201, 381, 554, 663, 953
BstNI CCWGG 3 cut(s) 132, 819, 861
BstNSI RCATGY 1 cut(s) 288
BstPAI GACNNNNGTC 1 cut(s) 402
BstSCI CCNGG 4 cut(s) 130, 326, 817, 859
BstSFI CTRYAG 1 cut(s) 661
BstSLI GKGCMC 1 cut(s) 506
BstUI CGCG 5 cut(s) 24, 359, 548, 590, 647
BstV1I GCAGC 4 cut(s) 501, 594, 987, 994
BstX2I RGATCY 2 cut(s) 452, 487
BstYI RGATCY 2 cut(s) 452, 487
BsuRI GGCC 3 cut(s) 130, 616, 956
BtgI CCRYGG 1 cut(s) 957
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 482, 948
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 6 cut(s) 51, 375, 467, 506, 780, 1002
Cac8I GCNNGC 5 cut(s) 151, 538, 970, 982, 1005
CfoI GCGC 6 cut(s) 26, 326, 467, 548, 590, 704
Cfr10I RCCGGY 6 cut(s) 221, 251, 293, 446, 704, 980
Cfr13I GGNCC 1 cut(s) 228
CseI GACGC 1 cut(s) 542
Csp6I GTAC 4 cut(s) 249, 282, 877, 909
CspAI ACCGGT 3 cut(s) 221, 251, 293
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 4 cut(s) 285, 922, 939, 958
CviQI GTAC 4 cut(s) 249, 282, 877, 909
DdeI CTNAG 1 cut(s) 510
DpnI GATC 4 cut(s) 454, 489, 810, 937
DpnII GATC 4 cut(s) 452, 487, 808, 935
DraI TTTAAA 1 cut(s) 640
DrdI GACNNNNNNGTC 1 cut(s) 784
DriI GACNNNNNGTC 2 cut(s) 787, 861
DseDI GACNNNNNNGTC 1 cut(s) 784
EaeI YGGCCR 1 cut(s) 954
Eam1104I CTCTTC 1 cut(s) 34
Eam1105I GACNNNNNGTC 2 cut(s) 787, 861
EarI CTCTTC 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 957
Eco24I GRGCYC 2 cut(s) 186, 247
Eco31I GGTCTC 1 cut(s) 911
Eco47I GGWCC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 130, 817, 859
EcoT14I CCWWGG 1 cut(s) 957
EcoT38I GRGCYC 2 cut(s) 186, 247
ErhI CCWWGG 1 cut(s) 957
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 4 cut(s) 288, 925, 942, 961
FaiI YATR 9 cut(s) 84, 127, 286, 594, 663, 717, 923, 940, 959
FaqI GGGAC 1 cut(s) 904
FatI CATG 4 cut(s) 284, 921, 938, 957
FblI GTMKAC 2 cut(s) 411, 791
FokI GGATG 2 cut(s) 489, 955
FriOI GRGCYC 2 cut(s) 186, 247
FspBI CTAG 4 cut(s) 371, 606, 744, 759
GlaI GCGC 6 cut(s) 25, 325, 466, 547, 589, 703
GsuI CTGGAG 2 cut(s) 756, 843
HaeIII GGCC 3 cut(s) 130, 616, 956
HgaI GACGC 1 cut(s) 542
HhaI GCGC 6 cut(s) 26, 326, 467, 548, 590, 704
Hin1II CATG 4 cut(s) 288, 925, 942, 961
Hin6I GCGC 6 cut(s) 24, 324, 465, 546, 588, 702
HinP1I GCGC 6 cut(s) 24, 324, 465, 546, 588, 702
HincII GTYRAC 3 cut(s) 412, 792, 851
HindII GTYRAC 3 cut(s) 412, 792, 851
HinfI GANTC 6 cut(s) 7, 135, 237, 565, 782, 856
HphI GGTGA 4 cut(s) 147, 308, 733, 926
Hpy166II GTNNAC 5 cut(s) 366, 412, 792, 851, 877
Hpy188I TCNGA 6 cut(s) 429, 564, 631, 808, 826, 901
Hpy188III TCNNGA 1 cut(s) 569
Hpy8I GTNNAC 5 cut(s) 366, 412, 792, 851, 877
Hpy99I CGWCG 8 cut(s) 24, 401, 413, 416, 530, 680, 790, 793
HpyAV CCTTC 3 cut(s) 612, 627, 744
HpyCH4III ACNGT 7 cut(s) 55, 124, 269, 416, 578, 721, 997
HpyCH4IV ACGT 2 cut(s) 399, 725
HpyCH4V TGCA 6 cut(s) 258, 288, 480, 540, 582, 1010
HpyF10VI GCNNNNNNNGC 5 cut(s) 201, 381, 554, 663, 953
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 2 cut(s) 399, 725
Hsp92II CATG 4 cut(s) 288, 925, 942, 961
HspAI GCGC 6 cut(s) 24, 324, 465, 546, 588, 702
KroI GCCGGC 1 cut(s) 980
KroNI GCCGGC 1 cut(s) 982
Kzo9I GATC 4 cut(s) 452, 487, 808, 935
LmnI GCTCC 5 cut(s) 189, 220, 281, 311, 662
Lsp1109I GCAGC 4 cut(s) 501, 594, 987, 994
LweI GCATC 2 cut(s) 467, 670
MaeI CTAG 4 cut(s) 371, 606, 744, 759
MaeII ACGT 2 cut(s) 399, 725
MaeIII GTNAC 8 cut(s) 296, 349, 416, 721, 775, 833, 882, 924
MalI GATC 4 cut(s) 454, 489, 810, 937
MboI GATC 4 cut(s) 452, 487, 808, 935
MboII GAAGA 3 cut(s) 6, 21, 729
MflI RGATCY 2 cut(s) 452, 487
MhlI GDGCHC 4 cut(s) 186, 247, 506, 692
MlsI TGGCCA 1 cut(s) 956
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 3 cut(s) 574, 776, 850
MmeI TCCRAC 2 cut(s) 333, 879
MnlI CCTC 6 cut(s) 37, 208, 663, 780, 805, 958
Mox20I TGGCCA 1 cut(s) 956
MroNI GCCGGC 1 cut(s) 980
MscI TGGCCA 1 cut(s) 956
MseI TTAA 2 cut(s) 492, 639
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 956
MspA1I CMGCKG 1 cut(s) 585
MspR9I CCNGG 4 cut(s) 132, 328, 819, 861
Mva1269I GAATGC 2 cut(s) 151, 326
MvaI CCWGG 3 cut(s) 132, 819, 861
MvnI CGCG 5 cut(s) 24, 359, 548, 590, 647
MwoI GCNNNNNNNGC 5 cut(s) 201, 381, 554, 663, 953
NaeI GCCGGC 1 cut(s) 982
NciI CCSGG 1 cut(s) 328
NcoI CCATGG 1 cut(s) 957
NdeII GATC 4 cut(s) 452, 487, 808, 935
NgoMIV GCCGGC 1 cut(s) 980
NlaIII CATG 4 cut(s) 288, 925, 942, 961
NlaIV GGNNCC 5 cut(s) 196, 277, 307, 337, 805
NmuCI GTSAC 4 cut(s) 296, 721, 775, 882
NspI RCATGY 1 cut(s) 288
PcsI WCGNNNNNNNCGW 2 cut(s) 405, 675
PctI GAATGC 2 cut(s) 151, 326
PdiI GCCGGC 1 cut(s) 982
PfeI GAWTC 3 cut(s) 7, 135, 237
PflFI GACNNNGTC 1 cut(s) 895
PflMI CCANNNNNTGG 1 cut(s) 225
PinAI ACCGGT 3 cut(s) 221, 251, 293
PleI GAGTC 3 cut(s) 573, 776, 850
PpsI GAGTC 3 cut(s) 573, 776, 850
PshAI GACNNNNGTC 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 3 cut(s) 130, 817, 859
PspGI CCWGG 3 cut(s) 130, 817, 859
PspN4I GGNNCC 5 cut(s) 196, 277, 307, 337, 805
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 2 cut(s) 452, 487
PsyI GACNNNGTC 1 cut(s) 895
RsaI GTAC 4 cut(s) 250, 283, 878, 910
RsaNI GTAC 4 cut(s) 249, 282, 877, 909
RseI CAYNNNNRTG 1 cut(s) 428
SacI GAGCTC 1 cut(s) 186
SalI GTCGAC 2 cut(s) 410, 790
SaqAI TTAA 2 cut(s) 492, 639
Sau3AI GATC 4 cut(s) 452, 487, 808, 935
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 3 cut(s) 574, 776, 850
ScrFI CCNGG 4 cut(s) 132, 328, 819, 861
SduI GDGCHC 4 cut(s) 186, 247, 506, 692
SfaNI GCATC 2 cut(s) 467, 670
SfcI CTRYAG 1 cut(s) 661
SgrAI CRCCGGYG 2 cut(s) 446, 704
SgrDI CGTCGACG 1 cut(s) 410
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 428
SsiI CCGC 8 cut(s) 114, 303, 339, 344, 359, 381, 585, 645
SspMI CTAG 4 cut(s) 371, 606, 744, 759
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 4 cut(s) 130, 326, 817, 859
StyI CCWWGG 1 cut(s) 957
TaaI ACNGT 7 cut(s) 55, 124, 269, 416, 578, 721, 997
TaiI ACGT 2 cut(s) 402, 728
TaqI TCGA 7 cut(s) 143, 235, 264, 318, 411, 755, 791
TauI GCSGC 6 cut(s) 117, 306, 341, 384, 588, 647
TfiI GAWTC 3 cut(s) 7, 135, 237
Tru1I TTAA 2 cut(s) 492, 639
Tru9I TTAA 2 cut(s) 492, 639
TscAI CASTG 6 cut(s) 58, 382, 467, 506, 780, 1002
TseFI GTSAC 4 cut(s) 296, 721, 775, 882
TseI GCWGC 4 cut(s) 514, 582, 1000, 1007
Tsp45I GTSAC 4 cut(s) 296, 721, 775, 882
TspDTI ATGAA 2 cut(s) 20, 978
TspGWI ACGGA 5 cut(s) 500, 543, 610, 948, 1011
TspRI CASTG 6 cut(s) 58, 382, 467, 506, 780, 1002
Tth111I GACNNNGTC 1 cut(s) 895
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 228
XceI RCATGY 1 cut(s) 288
XmiI GTMKAC 2 cut(s) 411, 791
XspI CTAG 4 cut(s) 371, 606, 744, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.