pycom02g10200

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0003319
Physical Location & Seq
Reverse (-)
7034550 .. 7035310
761 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10200.1

Sequence Viewer

Length: 588 bp
ATGGCTACTCCAATTTCTTACCACTTCACCTTCATTCTTCTAATCATTACCGAAGGGGCCACATTCACGTTCACAAATAAGTGTGACTTCACAGTATGGCCGGGAATTCTAGCCAGCGCCGGCAACGACAAGCTCGACAGCACCGGCTTCGAGCTTCCCAAAGGCAGTTCCCGCGTCTTCCAAGCCCCGACCGGCTGGTCCGGTCGCTTCTGGGGCCGAACCGGCTGCACCTTTGACGGTTCGGGTCGGGGTTCTTGTTCGACCGGGGACTGCGGCTCGGGCGAGCTCGAGTGCAACGGTGCCGGAGCCGTGCCACCGGCCACCTTAGCCGAGTTCACACTCGGCTCGGGTTCTCAAGACTTCTATGACGTCAGCCTCGTTGACGGTTATAACTTACCAATGATCGTTGAGGGGAGTGGGGGATCCGGTGCGTGCGCGTCCACCGGGTGCGTTACGGACCTCAACCGTCGGTGCCCTGCCGAGCTCAAAGTCAAGGGTGGCGGCGCGTGCAAGAGTGCGTGTGACGCATTTGGAAGTCCGGAGTATTGTTGCAACGGCGCCTACGTCGGCGTGTCCGAAATCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

196

Amino Acids

20.06

Weight (kDa)

4.6

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 26 - 189 8e-63 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
AasI GACNNNNNNGTC 1 cut(s) 196
AatII GACGTC 1 cut(s) 372
AccB1I GGYRCC 3 cut(s) 299, 471, 557
AccII CGCG 3 cut(s) 174, 437, 506
AccIII TCCGGA 1 cut(s) 538
AciI CCGC 3 cut(s) 172, 273, 501
AclWI GGATC 2 cut(s) 417, 430
AcoI YGGCCR 2 cut(s) 98, 318
AcsI RAATTY 1 cut(s) 105
AcyI GRCGYC 2 cut(s) 369, 558
AdeI CACNNNGTG 1 cut(s) 447
AluBI AGCT 4 cut(s) 133, 154, 286, 484
AluI AGCT 4 cut(s) 133, 154, 286, 484
Alw21I GWGCWC 2 cut(s) 288, 486
AlwI GGATC 2 cut(s) 417, 430
Ama87I CYCGRG 3 cut(s) 277, 287, 346
Aor13HI TCCGGA 1 cut(s) 538
AoxI GGCC 4 cut(s) 57, 98, 214, 318
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 105
AspLEI GCGC 4 cut(s) 119, 437, 506, 560
AspS9I GGNCC 4 cut(s) 57, 198, 214, 457
AsuC2I CCSGG 3 cut(s) 102, 265, 445
AsuHPI GGTGA 1 cut(s) 19
AvaI CYCGRG 3 cut(s) 277, 287, 346
AvaII GGWCC 2 cut(s) 198, 457
BaeGI GKGCMC 1 cut(s) 476
BamHI GGATCC 1 cut(s) 422
BanI GGYRCC 3 cut(s) 299, 471, 557
BanII GRGCYC 2 cut(s) 288, 486
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 2 cut(s) 288, 486
BbvI GCAGC 1 cut(s) 212
BceAI ACGGC 2 cut(s) 293, 571
BcgI CGANNNNNNTGC 4 cut(s) 130, 164, 207, 241
BcnI CCSGG 3 cut(s) 102, 265, 445
BfaI CTAG 1 cut(s) 110
BfoI RGCGCY 2 cut(s) 120, 561
BglI GCCNNNNNGGC 1 cut(s) 222
BisI GCNGC 3 cut(s) 226, 274, 502
BlsI GCNGC 3 cut(s) 227, 275, 503
Bme1390I CCNGG 3 cut(s) 102, 265, 445
Bme18I GGWCC 2 cut(s) 198, 457
BmeT110I CYCGRG 3 cut(s) 277, 287, 346
BmgT120I GGNCC 4 cut(s) 57, 198, 214, 457
BmiI GGNNCC 7 cut(s) 58, 215, 301, 307, 424, 473, 559
BmrFI CCNGG 3 cut(s) 102, 265, 445
BpiI GAAGAC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 325
BpuEI CTTGAG 1 cut(s) 339
BpuMI CCSGG 3 cut(s) 102, 265, 445
BsaHI GRCGYC 2 cut(s) 369, 558
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 3 cut(s) 200, 425, 538
Bse118I RCCGGY 5 cut(s) 119, 143, 191, 221, 316
BseAI TCCGGA 1 cut(s) 538
BseDI CCNNGG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 211
Bsh1236I CGCG 3 cut(s) 174, 437, 506
Bsh1285I CGRYCG 3 cut(s) 192, 205, 264
BshFI GGCC 4 cut(s) 59, 100, 216, 320
BshNI GGYRCC 3 cut(s) 299, 471, 557
BsiEI CGRYCG 3 cut(s) 192, 205, 264
BsiHKAI GWGCWC 2 cut(s) 288, 486
BsiHKCI CYCGRG 3 cut(s) 277, 287, 346
BslFI GGGAC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 4 cut(s) 59, 100, 216, 320
BsoBI CYCGRG 3 cut(s) 277, 287, 346
Bsp1286I GDGCHC 3 cut(s) 288, 476, 486
Bsp13I TCCGGA 1 cut(s) 538
Bsp143I GATC 2 cut(s) 402, 422
BspACI CCGC 3 cut(s) 172, 273, 501
BspANI GGCC 4 cut(s) 59, 100, 216, 320
BspEI TCCGGA 1 cut(s) 538
BspFNI CGCG 3 cut(s) 174, 437, 506
BspLI GGNNCC 7 cut(s) 58, 215, 301, 307, 424, 473, 559
BspPI GGATC 2 cut(s) 417, 430
BspT107I GGYRCC 3 cut(s) 299, 471, 557
BsrFI RCCGGY 5 cut(s) 119, 143, 191, 221, 316
BssAI RCCGGY 5 cut(s) 119, 143, 191, 221, 316
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 402, 422
BssNI GRCGYC 2 cut(s) 369, 558
Bst4CI ACNGT 5 cut(s) 94, 239, 299, 386, 467
BstACI GRCGYC 2 cut(s) 369, 558
BstC8I GCNNGC 5 cut(s) 115, 121, 284, 433, 508
BstDEI CTNAG 1 cut(s) 325
BstFNI CGCG 3 cut(s) 174, 437, 506
BstH2I RGCGCY 2 cut(s) 120, 561
BstHHI GCGC 4 cut(s) 119, 437, 506, 560
BstKTI GATC 2 cut(s) 405, 425
BstMBI GATC 2 cut(s) 402, 422
BstMCI CGRYCG 3 cut(s) 192, 205, 264
BstMWI GCNNNNNNNGC 7 cut(s) 171, 213, 222, 279, 326, 507, 524
BstSCI CCNGG 3 cut(s) 100, 263, 443
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 3 cut(s) 174, 437, 506
BstV1I GCAGC 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 4 cut(s) 59, 100, 216, 320
Cac8I GCNNGC 5 cut(s) 115, 121, 284, 433, 508
CfoI GCGC 4 cut(s) 119, 437, 506, 560
Cfr10I RCCGGY 5 cut(s) 119, 143, 191, 221, 316
Cfr13I GGNCC 4 cut(s) 57, 198, 214, 457
CseI GACGC 3 cut(s) 163, 426, 533
DdeI CTNAG 1 cut(s) 325
DinI GGCGCC 1 cut(s) 559
DpnI GATC 2 cut(s) 404, 424
DpnII GATC 2 cut(s) 402, 422
DraIII CACNNNGTG 1 cut(s) 447
DrdI GACNNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 2 cut(s) 98, 318
Ecl136II GAGCTC 2 cut(s) 286, 484
Eco24I GRGCYC 2 cut(s) 288, 486
Eco47I GGWCC 2 cut(s) 198, 457
Eco53kI GAGCTC 2 cut(s) 286, 484
Eco88I CYCGRG 3 cut(s) 277, 287, 346
EcoICRI GAGCTC 2 cut(s) 286, 484
EcoRI GAATTC 1 cut(s) 105
EcoT38I GRGCYC 2 cut(s) 288, 486
EgeI GGCGCC 1 cut(s) 559
EheI GGCGCC 1 cut(s) 559
FaiI YATR 5 cut(s) 97, 366, 390, 584, 586
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 1 cut(s) 281
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 3 cut(s) 226, 274, 502
FriOI GRGCYC 2 cut(s) 288, 486
Fsp4HI GCNGC 3 cut(s) 226, 274, 502
FspBI CTAG 1 cut(s) 110
GlaI GCGC 4 cut(s) 118, 436, 505, 559
GluI GCNGC 3 cut(s) 226, 274, 502
HaeII RGCGCY 2 cut(s) 120, 561
HaeIII GGCC 4 cut(s) 59, 100, 216, 320
HgaI GACGC 3 cut(s) 163, 426, 533
HhaI GCGC 4 cut(s) 119, 437, 506, 560
Hin1I GRCGYC 2 cut(s) 369, 558
Hin6I GCGC 4 cut(s) 117, 435, 504, 558
HinP1I GCGC 4 cut(s) 117, 435, 504, 558
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 4 cut(s) 72, 336, 382, 441
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 2 cut(s) 356, 539
Hpy8I GTNNAC 4 cut(s) 72, 336, 382, 441
Hpy99I CGWCG 2 cut(s) 471, 569
HpyAV CCTTC 2 cut(s) 40, 47
HpyCH4III ACNGT 5 cut(s) 94, 239, 299, 386, 467
HpyCH4IV ACGT 3 cut(s) 68, 369, 564
HpyCH4V TGCA 4 cut(s) 228, 294, 510, 552
HpyF10VI GCNNNNNNNGC 7 cut(s) 171, 213, 222, 279, 326, 507, 524
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 3 cut(s) 68, 369, 564
Hsp92I GRCGYC 2 cut(s) 369, 558
HspAI GCGC 4 cut(s) 117, 435, 504, 558
KasI GGCGCC 1 cut(s) 557
Kpn2I TCCGGA 1 cut(s) 538
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 402, 422
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 1 cut(s) 212
MaeI CTAG 1 cut(s) 110
MaeII ACGT 3 cut(s) 68, 369, 564
MaeIII GTNAC 3 cut(s) 83, 451, 521
MalI GATC 2 cut(s) 404, 424
MboI GATC 2 cut(s) 402, 422
MboII GAAGA 2 cut(s) 29, 169
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 3 cut(s) 288, 476, 486
MluCI AATT 2 cut(s) 12, 105
Mly113I GGCGCC 1 cut(s) 558
MnlI CCTC 3 cut(s) 386, 403, 470
MroI TCCGGA 1 cut(s) 538
MroNI GCCGGC 1 cut(s) 119
MspR9I CCNGG 3 cut(s) 102, 265, 445
MvnI CGCG 3 cut(s) 174, 437, 506
MwoI GCNNNNNNNGC 7 cut(s) 171, 213, 222, 279, 326, 507, 524
NaeI GCCGGC 1 cut(s) 121
NarI GGCGCC 1 cut(s) 558
NciI CCSGG 3 cut(s) 102, 265, 445
NdeII GATC 2 cut(s) 402, 422
NgoMIV GCCGGC 1 cut(s) 119
NlaIV GGNNCC 7 cut(s) 58, 215, 301, 307, 424, 473, 559
NmeAIII GCCGAG 3 cut(s) 321, 355, 505
NmuCI GTSAC 2 cut(s) 83, 521
PaeR7I CTCGAG 1 cut(s) 287
PcsI WCGNNNNNNNCGW 4 cut(s) 132, 375, 561, 573
PdiI GCCGGC 1 cut(s) 121
PkrI GCNGC 3 cut(s) 227, 275, 503
PluTI GGCGCC 1 cut(s) 561
PsiI TTATAA 1 cut(s) 390
Psp124BI GAGCTC 2 cut(s) 288, 486
PspN4I GGNNCC 7 cut(s) 58, 215, 301, 307, 424, 473, 559
PspPI GGNCC 4 cut(s) 57, 198, 214, 457
PspXI VCTCGAGB 1 cut(s) 287
PsuI RGATCY 1 cut(s) 422
SacI GAGCTC 2 cut(s) 288, 486
SatI GCNGC 3 cut(s) 226, 274, 502
Sau3AI GATC 2 cut(s) 402, 422
Sau96I GGNCC 4 cut(s) 57, 198, 214, 457
ScrFI CCNGG 3 cut(s) 102, 265, 445
SduI GDGCHC 3 cut(s) 288, 476, 486
SfoI GGCGCC 1 cut(s) 559
Sfr274I CTCGAG 1 cut(s) 287
SinI GGWCC 2 cut(s) 198, 457
SlaI CTCGAG 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 287, 354
SmoI CTYRAG 2 cut(s) 287, 354
Sse9I AATT 2 cut(s) 12, 105
SsiI CCGC 3 cut(s) 172, 273, 501
SspDI GGCGCC 1 cut(s) 557
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 2 cut(s) 288, 486
StyD4I CCNGG 3 cut(s) 100, 263, 443
TaaI ACNGT 5 cut(s) 94, 239, 299, 386, 467
TaiI ACGT 3 cut(s) 71, 372, 567
TaqI TCGA 4 cut(s) 135, 150, 260, 288
TasI AATT 2 cut(s) 12, 105
TauI GCSGC 2 cut(s) 276, 504
TseFI GTSAC 2 cut(s) 83, 521
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 2 cut(s) 83, 521
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 198, 457
XapI RAATTY 1 cut(s) 105
XhoI CTCGAG 1 cut(s) 287
XspI CTAG 1 cut(s) 110
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.