pycom10g10510

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003319
Physical Location & Seq
Forward (+)
13831489 .. 13833097
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g10510.1

Sequence Viewer

Length: 1068 bp
ATGGATCCCTTCTTTACATCCTCCCCTTGTCTCACTGTCATCCTTCTTCTCTTACTAGCCATGGCTTCCACAGGTGTATTAGCGACGACATTCACATTCGTCAACAGATGCGACTACACAGTGTGGCCCGGCATTCTCGCTAACGCCAACAGTCCTAGTCTCGACTCCACCGGATTCGAGCTTCCCAAGCAAACCGCCCGCACTTTCCAAGCCCCAACCGGCTGGTCCGGTCGTTTCTGGGCCCGAACCGGCTGCAGTTTCGACGGATCCGGTTCCGGGTCCTGCACCACCGGCGACTGTGGCTCTGGCCAAGTCGAATGCAACGGTGCCGGAGCCTCCCCGCCTGCGACGCTTGCCGAGTTTACTCTCGGCACCGGGGGACAGGACTTCTATGACGTTAGCCTTGTAGACGGGTACAACTTGCCCGTTTTCGTCGAGGGGACCGGCGGGTCGGGTCAGTGCGCCTCAACCGGGTGCTCCTCCGATCTGAACAGGATGTGCCCGACCGAGTTGAGAGTCGGCGATGGCGACGCTTGTAAGTGCGCGTGCGAGGCGTTTGGGACTCCCGAGTACTGTTGCAGCGGCGCGTATGCTACACCCAACACTTGTAGCCCGTCGGTTTACTCGCAGATGTTTAAGGCGGCGTGCCCCAAGTCGTATAGCTACGCCTACGATGATGCTACGAGTACGTTTACGTGCACTGGCGCTGATTATACGGTGACGTTTTGTCCCTCTTCCCCAAGTCAGAAATCTTCTAGAGATTCAACCACACCAATGACAGCAACACCATCACAAGGGGCTGCTACTGCCGGGTCGGATCCCGGGTTCACTTATTCAGATTCAGGTGCCGGCTCAGGCGTTGCAGTGTCAGGTTCTGGTACAGGTGTGGCTACGGGTACTGGGGCAGGTTCTGGCACCGGGGCTGGCGAAGCAATGCTGGCTGATGGATCATGGTTAGCTGGTTTGGCCATGGGAGACTCACCTAAGACAGTACCTCTCCCCACTCTACACTCAACACTCACTATCTCAGCAGTTTTATGTATCGTCTTGTCCTATCTTTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

356

Amino Acids

35.91

Weight (kDa)

4.21

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 35 - 244 1.8e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 896
AccB1I GGYRCC 4 cut(s) 326, 371, 845, 914
AccI GTMKAC 1 cut(s) 408
AccII CGCG 2 cut(s) 545, 587
AciI CCGC 6 cut(s) 195, 199, 341, 447, 582, 641
AclWI GGATC 6 cut(s) 12, 261, 274, 812, 825, 955
AcoI YGGCCR 2 cut(s) 307, 966
AdeI CACNNNGTG 1 cut(s) 123
AfaI GTAC 6 cut(s) 416, 572, 688, 880, 898, 993
AfiI CCNNNNNNNGG 3 cut(s) 276, 471, 794
AgsI TTSAA 1 cut(s) 765
AhdI GACNNNNNGTC 1 cut(s) 726
AloI GAACNNNNNNTCC 2 cut(s) 809, 841
AluBI AGCT 3 cut(s) 181, 663, 959
AluI AGCT 3 cut(s) 181, 663, 959
Alw21I GWGCWC 2 cut(s) 479, 701
Alw26I GTCTC 3 cut(s) 35, 164, 969
Alw44I GTGCAC 1 cut(s) 697
AlwI GGATC 6 cut(s) 12, 261, 274, 812, 825, 955
AlwNI CAGNNNCTG 2 cut(s) 875, 911
Ama87I CYCGRG 2 cut(s) 566, 821
AoxI GGCC 4 cut(s) 125, 240, 307, 966
ApaI GGGCCC 1 cut(s) 244
ApaLI GTGCAC 1 cut(s) 697
ApeKI GCWGC 3 cut(s) 252, 579, 800
AspLEI GCGC 4 cut(s) 464, 545, 587, 707
AspS9I GGNCC 6 cut(s) 126, 225, 240, 241, 279, 441
AsuC2I CCSGG 8 cut(s) 129, 277, 376, 472, 811, 822, 823, 919
AsuHPI GGTGA 2 cut(s) 730, 972
AvaI CYCGRG 2 cut(s) 566, 821
AvaII GGWCC 3 cut(s) 225, 279, 441
BaeGI GKGCMC 4 cut(s) 244, 503, 650, 701
BaeI ACNNNNGTAYC 2 cut(s) 870, 903
BalI TGGCCA 2 cut(s) 309, 968
BamHI GGATCC 3 cut(s) 4, 266, 817
BanI GGYRCC 4 cut(s) 326, 371, 845, 914
BanII GRGCYC 1 cut(s) 244
Bbv12I GWGCWC 2 cut(s) 479, 701
BbvI GCAGC 3 cut(s) 239, 591, 787
BccI CCATC 3 cut(s) 518, 796, 938
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BcnI CCSGG 8 cut(s) 129, 277, 376, 472, 811, 822, 823, 919
BcoDI GTCTC 3 cut(s) 35, 164, 969
BfaI CTAG 3 cut(s) 56, 156, 756
BfmI CTRYAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 896
BisI GCNGC 5 cut(s) 253, 580, 583, 642, 801
BlsI GCNGC 5 cut(s) 254, 581, 584, 643, 802
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 8 cut(s) 129, 277, 376, 472, 811, 822, 823, 919
Bme18I GGWCC 3 cut(s) 225, 279, 441
BmeRI GACNNNNNGTC 1 cut(s) 726
BmeT110I CYCGRG 2 cut(s) 566, 821
BmgT120I GGNCC 6 cut(s) 126, 225, 240, 241, 279, 441
BmrFI CCNGG 8 cut(s) 129, 277, 376, 472, 811, 822, 823, 919
BmrI ACTGGG 1 cut(s) 909
BmsI GCATC 2 cut(s) 98, 667
BmuI ACTGGG 1 cut(s) 909
Bpu10I CCTNAGC 1 cut(s) 853
BpuMI CCSGG 8 cut(s) 129, 277, 376, 472, 811, 822, 823, 919
BsaAI YACGTR 1 cut(s) 696
BsaJI CCNNGG 5 cut(s) 60, 375, 821, 918, 969
BsaWI WCCGGW 3 cut(s) 170, 227, 269
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 471, 794
Bse118I RCCGGY 5 cut(s) 218, 248, 290, 443, 848
Bse1I ACTGG 2 cut(s) 706, 904
Bse3DI GCAATG 1 cut(s) 939
BseDI CCNNGG 5 cut(s) 60, 375, 821, 918, 969
BseGI GGATG 3 cut(s) 17, 39, 501
BseLI CCNNNNNNNGG 3 cut(s) 276, 471, 794
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 2 cut(s) 867, 1041
BseNI ACTGG 2 cut(s) 706, 904
BseRI GAGGAG 1 cut(s) 469
BseSI GKGCMC 4 cut(s) 244, 503, 650, 701
BseXI GCAGC 3 cut(s) 239, 591, 787
BsgI GTGCAG 1 cut(s) 268
Bsh1236I CGCG 2 cut(s) 545, 587
Bsh1285I CGRYCG 2 cut(s) 232, 507
BshFI GGCC 4 cut(s) 127, 242, 309, 968
BshNI GGYRCC 4 cut(s) 326, 371, 845, 914
BsiEI CGRYCG 2 cut(s) 232, 507
BsiHKAI GWGCWC 2 cut(s) 479, 701
BsiHKCI CYCGRG 2 cut(s) 566, 821
BslFI GGGAC 4 cut(s) 393, 454, 574, 714
BslI CCNNNNNNNGG 3 cut(s) 276, 471, 794
BsmAI GTCTC 3 cut(s) 35, 164, 969
BsmFI GGGAC 4 cut(s) 393, 454, 574, 714
BsmI GAATGC 2 cut(s) 132, 323
BsnI GGCC 4 cut(s) 127, 242, 309, 968
BsoBI CYCGRG 2 cut(s) 566, 821
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 5 cut(s) 244, 479, 503, 650, 701
Bsp143I GATC 5 cut(s) 4, 266, 484, 817, 947
Bsp19I CCATGG 2 cut(s) 60, 969
BspACI CCGC 6 cut(s) 195, 199, 341, 447, 582, 641
BspANI GGCC 4 cut(s) 127, 242, 309, 968
BspCNI CTCAG 2 cut(s) 866, 1040
BspFNI CGCG 2 cut(s) 545, 587
BspMAI CTGCAG 1 cut(s) 257
BspMI ACCTGC 1 cut(s) 896
BspPI GGATC 6 cut(s) 12, 261, 274, 812, 825, 955
BspT107I GGYRCC 4 cut(s) 326, 371, 845, 914
BsrDI GCAATG 1 cut(s) 939
BsrFI RCCGGY 5 cut(s) 218, 248, 290, 443, 848
BsrI ACTGG 2 cut(s) 706, 904
BssAI RCCGGY 5 cut(s) 218, 248, 290, 443, 848
BssECI CCNNGG 5 cut(s) 60, 375, 821, 918, 969
BssMI GATC 5 cut(s) 4, 266, 484, 817, 947
BssT1I CCWWGG 2 cut(s) 60, 969
Bst4CI ACNGT 8 cut(s) 37, 121, 152, 299, 326, 575, 718, 991
Bst6I CTCTTC 1 cut(s) 739
BstBAI YACGTR 1 cut(s) 696
BstC8I GCNNGC 8 cut(s) 199, 345, 354, 547, 646, 850, 925, 939
BstDEI CTNAG 3 cut(s) 853, 984, 1027
BstDSI CCRYGG 2 cut(s) 60, 969
BstF5I GGATG 3 cut(s) 17, 39, 501
BstFNI CGCG 2 cut(s) 545, 587
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 4 cut(s) 464, 545, 587, 707
BstKTI GATC 5 cut(s) 7, 269, 487, 820, 950
BstMAI GTCTC 3 cut(s) 35, 164, 969
BstMBI GATC 5 cut(s) 4, 266, 484, 817, 947
BstMCI CGRYCG 2 cut(s) 232, 507
BstSCI CCNGG 8 cut(s) 127, 275, 374, 470, 809, 820, 821, 917
BstSFI CTRYAG 1 cut(s) 253
BstSLI GKGCMC 4 cut(s) 244, 503, 650, 701
BstUI CGCG 2 cut(s) 545, 587
BstV1I GCAGC 3 cut(s) 239, 591, 787
BstX2I RGATCY 3 cut(s) 4, 266, 817
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 3 cut(s) 4, 266, 817
BsuRI GGCC 4 cut(s) 127, 242, 309, 968
BtgI CCRYGG 2 cut(s) 60, 969
BtgZI GCGATG 1 cut(s) 537
BtsCI GGATG 3 cut(s) 17, 39, 501
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 5 cut(s) 33, 126, 464, 699, 870
BveI ACCTGC 1 cut(s) 896
Cac8I GCNNGC 8 cut(s) 199, 345, 354, 547, 646, 850, 925, 939
CaiI CAGNNNCTG 2 cut(s) 875, 911
CfoI GCGC 4 cut(s) 464, 545, 587, 707
Cfr10I RCCGGY 5 cut(s) 218, 248, 290, 443, 848
Cfr13I GGNCC 6 cut(s) 126, 225, 240, 241, 279, 441
Cfr9I CCCGGG 1 cut(s) 821
CseI GACGC 2 cut(s) 358, 539
Csp6I GTAC 6 cut(s) 415, 571, 687, 879, 897, 992
CviAII CATG 3 cut(s) 61, 951, 970
CviQI GTAC 6 cut(s) 415, 571, 687, 879, 897, 992
DdeI CTNAG 3 cut(s) 853, 984, 1027
DpnI GATC 5 cut(s) 6, 268, 486, 819, 949
DpnII GATC 5 cut(s) 4, 266, 484, 817, 947
DraIII CACNNNGTG 1 cut(s) 123
DrdI GACNNNNNNGTC 1 cut(s) 448
DriI GACNNNNNGTC 1 cut(s) 726
DseDI GACNNNNNNGTC 1 cut(s) 448
EaeI YGGCCR 2 cut(s) 307, 966
Eam1104I CTCTTC 1 cut(s) 739
Eam1105I GACNNNNNGTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 739
Eco130I CCWWGG 2 cut(s) 60, 969
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 225, 279, 441
Eco88I CYCGRG 2 cut(s) 566, 821
EcoO109I RGGNCCY 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 60, 969
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 2 cut(s) 60, 969
FaeI CATG 3 cut(s) 64, 954, 973
FaiI YATR 8 cut(s) 62, 393, 591, 660, 714, 952, 971, 1039
FaqI GGGAC 4 cut(s) 393, 454, 574, 714
FatI CATG 3 cut(s) 60, 950, 969
FauI CCCGC 3 cut(s) 206, 348, 440
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 5 cut(s) 253, 580, 583, 642, 801
FokI GGATG 3 cut(s) 4, 26, 508
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 5 cut(s) 253, 580, 583, 642, 801
FspBI CTAG 3 cut(s) 56, 156, 756
GlaI GCGC 4 cut(s) 463, 544, 586, 706
GluI GCNGC 5 cut(s) 253, 580, 583, 642, 801
HaeII RGCGCY 1 cut(s) 708
HaeIII GGCC 4 cut(s) 127, 242, 309, 968
HgaI GACGC 2 cut(s) 358, 539
HhaI GCGC 4 cut(s) 464, 545, 587, 707
Hin1II CATG 3 cut(s) 64, 954, 973
Hin6I GCGC 4 cut(s) 462, 543, 585, 705
HinP1I GCGC 4 cut(s) 462, 543, 585, 705
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 7 cut(s) 164, 174, 516, 562, 761, 839, 977
HphI GGTGA 2 cut(s) 730, 972
Hpy166II GTNNAC 7 cut(s) 103, 363, 409, 622, 693, 699, 828
Hpy188I TCNGA 5 cut(s) 484, 489, 747, 817, 838
Hpy188III TCNNGA 3 cut(s) 161, 566, 756
Hpy8I GTNNAC 7 cut(s) 103, 363, 409, 622, 693, 699, 828
Hpy99I CGWCG 6 cut(s) 88, 266, 352, 437, 533, 619
HpyAV CCTTC 2 cut(s) 19, 53
HpyCH4III ACNGT 8 cut(s) 37, 121, 152, 299, 326, 575, 718, 991
HpyCH4IV ACGT 4 cut(s) 396, 689, 695, 722
HpyCH4V TGCA 6 cut(s) 255, 285, 321, 579, 699, 863
HpyF3I CTNAG 3 cut(s) 853, 984, 1027
HpySE526I ACGT 4 cut(s) 396, 689, 695, 722
Hsp92II CATG 3 cut(s) 64, 954, 973
HspAI GCGC 4 cut(s) 462, 543, 585, 705
KroI GCCGGC 1 cut(s) 848
KroNI GCCGGC 1 cut(s) 850
Kzo9I GATC 5 cut(s) 4, 266, 484, 817, 947
LmnI GCTCC 2 cut(s) 332, 482
Lsp1109I GCAGC 3 cut(s) 239, 591, 787
LweI GCATC 2 cut(s) 98, 667
MaeI CTAG 3 cut(s) 56, 156, 756
MaeII ACGT 4 cut(s) 396, 689, 695, 722
MaeIII GTNAC 1 cut(s) 718
MalI GATC 5 cut(s) 6, 268, 486, 819, 949
MboI GATC 5 cut(s) 4, 266, 484, 817, 947
MboII GAAGA 3 cut(s) 38, 726, 744
MflI RGATCY 3 cut(s) 4, 266, 817
MhlI GDGCHC 5 cut(s) 244, 479, 503, 650, 701
MlsI TGGCCA 2 cut(s) 309, 968
MluNI TGGCCA 2 cut(s) 309, 968
MlyI GAGTC 4 cut(s) 158, 525, 556, 971
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 8 cut(s) 31, 346, 430, 475, 490, 544, 742, 1005
Mox20I TGGCCA 2 cut(s) 309, 968
MroNI GCCGGC 1 cut(s) 848
MscI TGGCCA 2 cut(s) 309, 968
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 1 cut(s) 773
Msp20I TGGCCA 2 cut(s) 309, 968
MspA1I CMGCKG 1 cut(s) 582
MspR9I CCNGG 8 cut(s) 129, 277, 376, 472, 811, 822, 823, 919
Mva1269I GAATGC 2 cut(s) 132, 323
MvnI CGCG 2 cut(s) 545, 587
NaeI GCCGGC 1 cut(s) 850
NciI CCSGG 8 cut(s) 129, 277, 376, 472, 811, 822, 823, 919
NcoI CCATGG 2 cut(s) 60, 969
NdeII GATC 5 cut(s) 4, 266, 484, 817, 947
NgoMIV GCCGGC 1 cut(s) 848
NlaIII CATG 3 cut(s) 64, 954, 973
NmeAIII GCCGAG 2 cut(s) 348, 382
NmuCI GTSAC 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PctI GAATGC 2 cut(s) 132, 323
PdiI GCCGGC 1 cut(s) 850
PfeI GAWTC 3 cut(s) 174, 761, 839
PkrI GCNGC 5 cut(s) 254, 581, 584, 643, 802
PleI GAGTC 4 cut(s) 158, 524, 556, 971
PpsI GAGTC 4 cut(s) 158, 524, 556, 971
Ppu21I YACGTR 1 cut(s) 696
PpuMI RGGWCCY 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 279
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 6 cut(s) 126, 225, 240, 241, 279, 441
PspPPI RGGWCCY 1 cut(s) 279
PstI CTGCAG 1 cut(s) 257
PstNI CAGNNNCTG 2 cut(s) 875, 911
PsuI RGATCY 3 cut(s) 4, 266, 817
RsaI GTAC 6 cut(s) 416, 572, 688, 880, 898, 993
RsaNI GTAC 6 cut(s) 415, 571, 687, 879, 897, 992
RseI CAYNNNNRTG 1 cut(s) 773
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 5 cut(s) 253, 580, 583, 642, 801
Sau3AI GATC 5 cut(s) 4, 266, 484, 817, 947
Sau96I GGNCC 6 cut(s) 126, 225, 240, 241, 279, 441
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 4 cut(s) 158, 525, 556, 971
ScrFI CCNGG 8 cut(s) 129, 277, 376, 472, 811, 822, 823, 919
SduI GDGCHC 5 cut(s) 244, 479, 503, 650, 701
SfaNI GCATC 2 cut(s) 98, 667
SfcI CTRYAG 1 cut(s) 253
SgrAI CRCCGGYG 1 cut(s) 290
SinI GGWCC 3 cut(s) 225, 279, 441
SmaI CCCGGG 1 cut(s) 823
SmiMI CAYNNNNRTG 1 cut(s) 773
SsiI CCGC 6 cut(s) 195, 199, 341, 447, 582, 641
SspMI CTAG 3 cut(s) 56, 156, 756
StyD4I CCNGG 8 cut(s) 127, 275, 374, 470, 809, 820, 821, 917
StyI CCWWGG 2 cut(s) 60, 969
TaaI ACNGT 8 cut(s) 37, 121, 152, 299, 326, 575, 718, 991
TaiI ACGT 4 cut(s) 399, 692, 698, 725
TaqI TCGA 5 cut(s) 162, 177, 261, 315, 435
TaqII GACCGA 1 cut(s) 521
TatI WGTACW 1 cut(s) 570
TauI GCSGC 2 cut(s) 585, 644
TfiI GAWTC 3 cut(s) 174, 761, 839
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 5 cut(s) 40, 126, 464, 706, 870
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 3 cut(s) 252, 579, 800
Tsp45I GTSAC 1 cut(s) 718
TspGWI ACGGA 1 cut(s) 279
TspMI CCCGGG 1 cut(s) 821
TspRI CASTG 5 cut(s) 40, 126, 464, 706, 870
VneI GTGCAC 1 cut(s) 697
VpaK11BI GGWCC 3 cut(s) 225, 279, 441
XbaI TCTAGA 1 cut(s) 755
XmaI CCCGGG 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 3 cut(s) 56, 156, 756
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.