AT4G39400
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012455
Physical Location & Seq
Forward (+)
18324457 .. 18328831
4375 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39400.1

Sequence Viewer

Length: 3591 bp
ATGAAGACTTTTTCAAGCTTCTTTCTCTCTGTAACAACTCTCTTCTTCTTCTCCTTCTTTTCTCTTTCATTTCAAGCTTCACCATCTCAGTCTTTATACAGAGAAATCCATCAGCTTATAAGCTTCAAAGACGTTCTTCCTGACAAGAATCTTCTCCCAGACTGGTCTTCCAACAAAAACCCGTGTACTTTCGATGGCGTTACTTGCAGAGACGACAAAGTTACTTCGATTGATCTCAGCTCCAAGCCTCTCAACGTCGGATTCAGTGCCGTGTCCTCGTCTCTCCTGTCTCTCACCGGATTAGAGTCTCTGTTTCTCTCAAACTCACACATCAATGGCTCCGTTTCTGGCTTCAAGTGCTCTGCTTCTTTAACCAGCTTGGATCTATCTAGAAACTCTCTTTCGGGTCCTGTAACGACTCTAACAAGCCTTGGTTCTTGCTCCGGTCTGAAGTTTCTTAACGTCTCTTCCAATACACTTGATTTTCCCGGGAAAGTTTCAGGTGGGTTGAAGCTAAACAGCTTGGAAGTTCTGGATCTTTCTGCGAATTCAATCTCCGGTGCTAACGTCGTTGGTTGGGTTCTCTCCGATGGGTGTGGAGAGTTGAAACATTTAGCGATTAGCGGAAACAAAATCAGTGGAGACGTCGATGTTTCTCGCTGCGTGAATCTCGAGTTTCTCGATGTTTCCTCCAACAATTTCTCCACTGGGATTCCTTTCCTCGGAGATTGCTCTGCTCTGCAACATCTTGACATCTCCGGGAACAAATTATCCGGCGATTTCTCCCGTGCTATCTCTACTTGCACAGAGCTCAAGTTGTTGAACATCTCTAGTAACCAATTCGTCGGACCAATCCCTCCGCTACCGCTTAAAAGTCTCCAATACCTCTCTCTGGCCGAGAACAAATTCACCGGCGAGATCCCTGACTTTCTCTCCGGCGCGTGTGATACACTCACTGGTCTCGATCTCTCTGGAAATCATTTCTACGGTGCGGTTCCTCCATTCTTCGGTTCATGTTCTCTTCTCGAATCACTCGCGTTGTCGAGTAACAACTTCTCTGGCGAGTTACCGATGGATACGTTGTTGAAGATGAGAGGACTCAAAGTACTTGATCTGTCTTTCAACGAGTTTTCCGGCGAATTACCGGAATCTCTGACGAATCTATCCGCTTCGTTGCTAACGTTAGATCTCAGCTCCAACAATTTCTCCGGTCCGATTCTCCCAAATCTCTGCCAGAACCCTAAAAACACTCTGCAGGAGCTTTACCTTCAGAACAATGGCTTCACCGGGAAGATTCCACCGACTTTAAGCAACTGTTCTGAGCTGGTTTCGCTTCACTTGAGCTTCAATTACCTCTCCGGGACAATCCCTTCGAGCTTAGGCTCTCTATCGAAGCTTCGAGATCTGAAACTATGGCTGAATATGTTAGAAGGAGAGATCCCTCAGGAGCTCATGTATGTCAAGACCTTAGAGACTCTGATCCTCGACTTCAACGATTTAACCGGTGAAATCCCTTCCGGTTTAAGTAACTGTACCAATCTTAACTGGATTTCTCTGTCGAATAACCGGTTAACCGGTGAGATTCCGAAATGGATTGGCCGGTTAGAGAATCTCGCTATCCTCAAGCTAAGCAACAATTCATTCTCCGGGAACATTCCGGCTGAGCTCGGCGACTGCAGAAGCTTAATCTGGCTTGATCTCAACACCAATCTCTTCAATGGAACGATTCCGGCGGCGATGTTTAAACAATCCGGGAAAATCGCTGCCAATTTCATCGCCGGTAAGAGGTACGTTTATATCAAAAACGATGGGATGAAGAAAGAGTGTCATGGAGCTGGTAATTTACTTGAGTTTCAAGGAATCAGATCCGAACAATTAAACCGGCTTTCAACGAGGAACCCTTGTAATATCACTAGCAGAGTCTATGGAGGTCACACTTCGCCGACGTTTGATAACAATGGTTCGATGATGTTTCTGGACATGTCTTACAACATGTTGTCTGGATACATACCGAAGGAGATTGGTTCGATGCCTTATCTGTTTATTCTCAATTTGGGTCATAACGATATCTCTGGTTCGATTCCTGATGAGGTAGGTGATCTAAGAGGTTTAAACATTCTTGATCTTTCAAGCAATAAGCTCGATGGGAGGATTCCTCAGGCTATGTCAGCTCTTACTATGCTTACGGAAATCGATTTGTCGAATAATAATTTGTCTGGTCCGATTCCTGAGATGGGTCAGTTTGAGACTTTTCCACCGGCTAAGTTCTTGAACAATCCTGGTCTCTGTGGTTATCCTCTTCCGCGGTGTGATCCTTCAAATGCAGACGGTTATGCTCATCATCAGAGATCTCATGGAAGGAGACCAGCGTCCCTTGCTGGTAGTGTGGCGATGGGATTGTTGTTCTCTTTTGTGTGTATATTTGGGCTGATCCTTGTTGGTAGAGAGATGAGGAAGAGACGGAGAAAGAAAGAGGCGGAGTTGGAGATGTATGCGGAAGGACATGGAAACTCTGGCGATAGAACTGCTAACAACACCAATTGGAAGCTGACTGGTGTGAAAGAAGCCTTGAGTATCAATCTTGCTGCTTTCGAGAAGCCATTGCGGAAGCTCACGTTTGCGGATCTTCTTCAGGCTACCAATGGTTTCCATAATGATAGTCTGATTGGTTCTGGTGGGTTTGGAGATGTTTACAAAGCGATTTTGAAAGATGGAAGCGCGGTGGCTATCAAGAAACTGATTCATGTTAGCGGTCAAGGTGATAGAGAGTTCATGGCGGAGATGGAAACCATTGGGAAGATCAAACATCGAAATCTTGTGCCTCTTCTTGGTTATTGCAAAGTTGGAGACGAGCGGCTTCTTGTGTATGAGTTTATGAAGTATGGAAGTTTAGAAGATGTTTTGCACGACCCCAAGAAAGCTGGGGTGAAACTAAACTGGTCCACACGGCGGAAGATTGCGATAGGATCAGCTAGAGGGCTTGCTTTCCTTCACCACAACTGCAGTCCGCATATCATCCACAGAGACATGAAATCCAGTAATGTGTTGCTTGATGAGAATTTGGAAGCTCGGGTTTCAGATTTTGGCATGGCGAGGCTGATGAGTGCGATGGATACGCATTTAAGCGTCAGTACATTAGCTGGTACACCGGGTTACGTTCCTCCAGAGTATTACCAAAGTTTCAGGTGTTCAACAAAAGGAGACGTTTATAGTTACGGTGTGGTCTTACTCGAGCTACTCACGGGTAAACGGCCAACGGATTCACCGGATTTTGGAGATAACAACCTTGTTGGATGGGTGAAACAGCACGCAAAACTGCGGATTAGCGATGTGTTTGACCCCGAGCTTATGAAGGAAGATCCAGCATTAGAGATCGAACTTTTACAACATTTAAAAGTTGCGGTTGCGTGTTTGGATGATCGGGCTTGGAGACGACCGACAATGGTACAAGTCATGGCCATGTTTAAGGAGATACAAGCCGGGTCAGGGATAGATTCACAGTCAACGATCAGATCAATAGAGGATGGAGGGTTCAGTACAATAGAGATGGTTGATATGAGTATAAAAGAAGTTCCTGAAGGAAAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0001578 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009593 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0009987 GO:0010008 GO:0010033 GO:0010208 GO:0010224 GO:0010268 GO:0010584 GO:0010927 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022607 GO:0023052 GO:0030154 GO:0030198 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0042802 GO:0042803 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046982 GO:0046983 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0048582 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051606 GO:0051716 GO:0055088 GO:0060548 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1905392 GO:1905393 GO:2000026 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

1196

Amino Acids

130.54

Weight (kDa)

5.99

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 35 - 69 3.7e-06 Leucine rich repeat N-terminal domain
LRR_14 PF23598 238 - 473 3.8e-08 Leucine-rich repeat region
LRR_14 PF23598 434 - 569 1.5e-07 Leucine-rich repeat region
LRR_8 PF13855 489 - 547 2e-06 Leucine rich repeat
LRR_8 PF13855 513 - 571 7.1e-07 Leucine rich repeat
Island PF20141 585 - 651 2.6e-27 Brassinosteroid receptor island domain
LRR_8 PF13855 700 - 738 3.1e-06 Leucine rich repeat
Pkinase PF00069 883 - 1152 1.3e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 886 - 1116 1e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39400
fragaria_vesca FvH4_1g23130
malus_domestica MD01G1014200.v1.1 MD15G1336800.v1.1
prunus_persica Prupe.6G168100_v2.0.a1
pyrus_communis pycom01g04600 pycom15g28930
rosa_chinensis RchiOBHm_Chr2g0117851
rosa_laevigata RLG00000018379
rosa_multiflora Rmu_co8475017.1_g000001 Rmu_sc0012910.1_g000002 Rmu_sc0022025.1_g000002
rosa_rugosa Rorug02G0214500
rosa_samantha Rh2AG270700 Rh2BG282200 Rh2CG268900 Rh2DG278500 Rh2DG296400
rosa_wichuraiana Rw2G021400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 119
AatII GACGTC 1 cut(s) 648
AccBSI CCGCTC 1 cut(s) 2854
AccII CGCG 4 cut(s) 941, 1037, 2305, 2720
AclI AACGTT 1 cut(s) 1181
AcoI YGGCCR 4 cut(s) 894, 1597, 3251, 3456
AcsI RAATTY 3 cut(s) 547, 905, 3058
AcuI CTGAAG 3 cut(s) 470, 1253, 2615
AcyI GRCGYC 1 cut(s) 645
AfaI GTAC 8 cut(s) 187, 1107, 1534, 1790, 3133, 3145, 3447, 3538
AfiI CCNNNNNNNGG 9 cut(s) 722, 892, 1007, 1785, 2234, 2828, 2949, 3272, 3486
AflIII ACRYGT 2 cut(s) 1980, 1992
AgeI ACCGGT 3 cut(s) 1502, 1566, 1574
AjnI CCWGG 1 cut(s) 2278
AloI GAACNNNNNNTCC 4 cut(s) 755, 787, 3515, 3547
Alw21I GWGCWC 4 cut(s) 362, 813, 1452, 1668
Ama87I CYCGRG 5 cut(s) 488, 671, 3069, 3230, 3341
AoxI GGCC 4 cut(s) 894, 1597, 3251, 3456
ApeKI GCWGC 3 cut(s) 660, 1763, 2585
ApoI RAATTY 3 cut(s) 547, 905, 3058
ArsI GACNNNNNNTTYG 2 cut(s) 1354, 1386
AsiGI ACCGGT 3 cut(s) 1502, 1566, 1574
Asp700I GAANNNNTTC 1 cut(s) 905
AspLEI GCGC 2 cut(s) 941, 2720
AspS9I GGNCC 5 cut(s) 407, 848, 1211, 2219, 2940
AsuC2I CCSGG 9 cut(s) 489, 490, 760, 1288, 1360, 1648, 1753, 3150, 3481
AvaI CYCGRG 5 cut(s) 488, 671, 3069, 3230, 3341
AvaII GGWCC 5 cut(s) 407, 848, 1211, 2219, 2940
AxyI CCTNAGG 2 cut(s) 1443, 2157
BalI TGGCCA 1 cut(s) 3458
BanII GRGCYC 3 cut(s) 813, 1452, 1668
BbsI GAAGAC 2 cut(s) 11, 159
Bbv12I GWGCWC 4 cut(s) 362, 813, 1452, 1668
BbvI GCAGC 3 cut(s) 647, 1750, 2572
BceAI ACGGC 3 cut(s) 254, 2963, 3266
BcgI CGANNNNNNTGC 4 cut(s) 2122, 2156, 2507, 2541
BciT130I CCWGG 1 cut(s) 2280
BciVI GTATCC 3 cut(s) 1069, 1997, 3106
BcnI CCSGG 9 cut(s) 489, 490, 760, 1288, 1360, 1648, 1753, 3150, 3481
BfaI CTAG 4 cut(s) 390, 831, 1914, 2973
BfmI CTRYAG 3 cut(s) 1253, 1675, 3001
BfuI GTATCC 3 cut(s) 1069, 1997, 3106
BglII AGATCT 3 cut(s) 1186, 1402, 2348
BisI GCNGC 5 cut(s) 661, 1734, 1764, 2586, 2855
BlpI GCTNAGC 2 cut(s) 1628, 1662
BlsI GCNGC 5 cut(s) 662, 1735, 1765, 2587, 2856
BmcAI AGTACT 1 cut(s) 1107
Bme18I GGWCC 5 cut(s) 407, 848, 1211, 2219, 2940
BmeT110I CYCGRG 5 cut(s) 488, 671, 3069, 3230, 3341
BmgT120I GGNCC 5 cut(s) 407, 848, 1211, 2219, 2940
BmiI GGNNCC 4 cut(s) 340, 408, 996, 1898
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 1 cut(s) 2019
BmuI ACTGGG 1 cut(s) 717
BoxI GACNNNNGTC 1 cut(s) 2368
BpiI GAAGAC 2 cut(s) 11, 159
BplI GAGNNNNNCTC 2 cut(s) 2140, 2172
BpmI CTGGAG 1 cut(s) 3147
Bpu10I CCTNAGC 1 cut(s) 1378
Bpu1102I GCTNAGC 2 cut(s) 1628, 1662
BpuEI CTTGAG 5 cut(s) 797, 1360, 1607, 1868, 2590
BpuMI CCSGG 9 cut(s) 489, 490, 760, 1288, 1360, 1648, 1753, 3150, 3481
Bsa29I ATCGAT 1 cut(s) 2193
BsaHI GRCGYC 1 cut(s) 645
BsaI GGTCTC 3 cut(s) 965, 2288, 2356
BsaJI CCNNGG 4 cut(s) 430, 488, 721, 2303
BsaXI ACNNNNNCTCC 8 cut(s) 686, 716, 917, 947, 1190, 1220, 1439, 1469
Bsc4I CCNNNNNNNGG 9 cut(s) 722, 892, 1007, 1785, 2234, 2828, 2949, 3272, 3486
Bse118I RCCGGY 8 cut(s) 911, 1502, 1566, 1574, 1599, 1778, 1881, 2257
Bse1I ACTGG 7 cut(s) 167, 712, 961, 1550, 2557, 2942, 3036
Bse21I CCTNAGG 2 cut(s) 1443, 2157
Bse3DI GCAATG 1 cut(s) 2600
BseBI CCWGG 1 cut(s) 2280
BseCI ATCGAT 1 cut(s) 2193
BseDI CCNNGG 4 cut(s) 430, 488, 721, 2303
BseGI GGATG 5 cut(s) 1818, 3015, 3299, 3421, 3529
BseLI CCNNNNNNNGG 9 cut(s) 722, 892, 1007, 1785, 2234, 2828, 2949, 3272, 3486
BseMI GCAATG 1 cut(s) 2600
BseMII CTCAG 8 cut(s) 101, 250, 1204, 1311, 1457, 1653, 2171, 2220
BseNI ACTGG 7 cut(s) 167, 712, 961, 1550, 2557, 2942, 3036
BseXI GCAGC 3 cut(s) 647, 1750, 2572
BseYI CCCAGC 1 cut(s) 2921
Bsh1236I CGCG 4 cut(s) 941, 1037, 2305, 2720
Bsh1285I CGRYCG 1 cut(s) 3437
BshFI GGCC 4 cut(s) 896, 1599, 3253, 3458
BshTI ACCGGT 3 cut(s) 1502, 1566, 1574
BshVI ATCGAT 1 cut(s) 2193
BsiEI CGRYCG 1 cut(s) 3437
BsiHKAI GWGCWC 4 cut(s) 362, 813, 1452, 1668
BsiHKCI CYCGRG 5 cut(s) 488, 671, 3069, 3230, 3341
BslFI GGGAC 2 cut(s) 1375, 2356
BslI CCNNNNNNNGG 9 cut(s) 722, 892, 1007, 1785, 2234, 2828, 2949, 3272, 3486
BsmBI CGTCTC 8 cut(s) 204, 285, 469, 636, 2452, 2841, 3195, 3424
BsmFI GGGAC 2 cut(s) 1375, 2356
BsnI GGCC 4 cut(s) 896, 1599, 3253, 3458
Bso31I GGTCTC 3 cut(s) 965, 2288, 2356
BsoBI CYCGRG 5 cut(s) 488, 671, 3069, 3230, 3341
Bsp1286I GDGCHC 4 cut(s) 362, 813, 1452, 1668
Bsp1720I GCTNAGC 2 cut(s) 1628, 1662
BspANI GGCC 4 cut(s) 896, 1599, 3253, 3458
BspCNI CTCAG 8 cut(s) 100, 249, 1203, 1312, 1456, 1654, 2170, 2221
BspDI ATCGAT 1 cut(s) 2193
BspFNI CGCG 4 cut(s) 941, 1037, 2305, 2720
BspLI GGNNCC 4 cut(s) 340, 408, 996, 1898
BspMAI CTGCAG 3 cut(s) 1257, 1679, 3005
BspTNI GGTCTC 3 cut(s) 965, 2288, 2356
BsrBI CCGCTC 1 cut(s) 2854
BsrDI GCAATG 1 cut(s) 2600
BsrFI RCCGGY 8 cut(s) 911, 1502, 1566, 1574, 1599, 1778, 1881, 2257
BsrI ACTGG 7 cut(s) 167, 712, 961, 1550, 2557, 2942, 3036
BssAI RCCGGY 8 cut(s) 911, 1502, 1566, 1574, 1599, 1778, 1881, 2257
BssECI CCNNGG 4 cut(s) 430, 488, 721, 2303
BssNI GRCGYC 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 2280
Bst4CI ACNGT 6 cut(s) 989, 1316, 1532, 2330, 3218, 3501
Bst6I CTCTTC 7 cut(s) 47, 472, 1026, 1718, 2304, 2450, 2829
BstACI GRCGYC 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 2982, 3309
BstDSI CCRYGG 1 cut(s) 2303
BstF5I GGATG 5 cut(s) 1818, 3015, 3299, 3421, 3529
BstFNI CGCG 4 cut(s) 941, 1037, 2305, 2720
BstHHI GCGC 2 cut(s) 941, 2720
BstMCI CGRYCG 1 cut(s) 3437
BstMWI GCNNNNNNNGC 5 cut(s) 204, 357, 1330, 2168, 2375
BstNI CCWGG 1 cut(s) 2280
BstNSI RCATGY 2 cut(s) 1984, 1996
BstPAI GACNNNNGTC 1 cut(s) 2368
BstSFI CTRYAG 3 cut(s) 1253, 1675, 3001
BstUI CGCG 4 cut(s) 941, 1037, 2305, 2720
BstV1I GCAGC 3 cut(s) 647, 1750, 2572
BstV2I GAAGAC 2 cut(s) 11, 159
Bsu15I ATCGAT 1 cut(s) 2193
Bsu36I CCTNAGG 2 cut(s) 1443, 2157
BsuI GTATCC 3 cut(s) 1069, 1997, 3106
BsuRI GGCC 4 cut(s) 896, 1599, 3253, 3458
BsuTUI ATCGAT 1 cut(s) 2193
BtgI CCRYGG 1 cut(s) 2303
BtgZI GCGATG 5 cut(s) 1751, 1759, 2405, 3122, 3342
BtsCI GGATG 5 cut(s) 1818, 3015, 3299, 3421, 3529
BtsIMutI CAGTG 4 cut(s) 271, 643, 705, 954
Cac8I GCNNGC 2 cut(s) 2982, 3309
CfoI GCGC 2 cut(s) 941, 2720
Cfr10I RCCGGY 8 cut(s) 911, 1502, 1566, 1574, 1599, 1778, 1881, 2257
Cfr13I GGNCC 5 cut(s) 407, 848, 1211, 2219, 2940
Cfr42I CCGCGG 1 cut(s) 2306
Cfr9I CCCGGG 1 cut(s) 488
ClaI ATCGAT 1 cut(s) 2193
CpoI CGGWCCG 1 cut(s) 1211
CseI GACGC 2 cut(s) 2358, 3115
Csp6I GTAC 8 cut(s) 186, 1106, 1533, 1789, 3132, 3144, 3446, 3537
CspAI ACCGGT 3 cut(s) 1502, 1566, 1574
CspCI CAANNNNNGTGG 2 cut(s) 619, 654
CspI CGGWCCG 1 cut(s) 1211
CviQI GTAC 8 cut(s) 186, 1106, 1533, 1789, 3132, 3144, 3446, 3537
DraI TTTAAA 3 cut(s) 1744, 2112, 3393
EaeI YGGCCR 4 cut(s) 894, 1597, 3251, 3456
Eam1104I CTCTTC 7 cut(s) 47, 472, 1026, 1718, 2304, 2450, 2829
EarI CTCTTC 7 cut(s) 47, 472, 1026, 1718, 2304, 2450, 2829
EciI GGCGGA 3 cut(s) 2492, 2792, 2965
Ecl136II GAGCTC 3 cut(s) 811, 1450, 1666
Eco130I CCWWGG 1 cut(s) 430
Eco24I GRGCYC 3 cut(s) 813, 1452, 1668
Eco31I GGTCTC 3 cut(s) 965, 2288, 2356
Eco32I GATATC 1 cut(s) 2068
Eco47I GGWCC 5 cut(s) 407, 848, 1211, 2219, 2940
Eco53kI GAGCTC 3 cut(s) 811, 1450, 1666
Eco57I CTGAAG 3 cut(s) 470, 1253, 2615
Eco81I CCTNAGG 2 cut(s) 1443, 2157
Eco88I CYCGRG 5 cut(s) 488, 671, 3069, 3230, 3341
EcoICRI GAGCTC 3 cut(s) 811, 1450, 1666
EcoO109I RGGNCCY 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 2278
EcoRV GATATC 1 cut(s) 2068
EcoT14I CCWWGG 1 cut(s) 430
EcoT38I GRGCYC 3 cut(s) 813, 1452, 1668
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 8 cut(s) 204, 285, 469, 636, 2452, 2841, 3195, 3424
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 2 cut(s) 1375, 2356
Fnu4HI GCNGC 5 cut(s) 661, 1734, 1764, 2586, 2855
FokI GGATG 5 cut(s) 1825, 3002, 3306, 3428, 3536
FriOI GRGCYC 3 cut(s) 813, 1452, 1668
Fsp4HI GCNGC 5 cut(s) 661, 1734, 1764, 2586, 2855
FspBI CTAG 4 cut(s) 390, 831, 1914, 2973
GlaI GCGC 2 cut(s) 940, 2719
GluI GCNGC 5 cut(s) 661, 1734, 1764, 2586, 2855
GsaI CCCAGC 1 cut(s) 2925
GsuI CTGGAG 1 cut(s) 3147
HaeIII GGCC 4 cut(s) 896, 1599, 3253, 3458
HgaI GACGC 2 cut(s) 2358, 3115
HhaI GCGC 2 cut(s) 941, 2720
Hin1I GRCGYC 1 cut(s) 645
Hin6I GCGC 2 cut(s) 939, 2718
HinP1I GCGC 2 cut(s) 939, 2718
HincII GTYRAC 2 cut(s) 1572, 3504
HindII GTYRAC 2 cut(s) 1572, 3504
HindIII AAGCTT 5 cut(s) 16, 75, 121, 1394, 1681
HpaI GTTAAC 1 cut(s) 1572
Hpy166II GTNNAC 7 cut(s) 186, 1572, 2692, 2943, 3146, 3248, 3504
Hpy8I GTNNAC 7 cut(s) 186, 1572, 2692, 2943, 3146, 3248, 3504
Hpy99I CGWCG 5 cut(s) 260, 572, 650, 848, 1948
HpyCH4III ACNGT 6 cut(s) 989, 1316, 1532, 2330, 3218, 3501
HpyCH4V TGCA 9 cut(s) 207, 742, 804, 1255, 1677, 2324, 2838, 2905, 3003
HpyF10VI GCNNNNNNNGC 5 cut(s) 204, 357, 1330, 2168, 2375
Hsp92I GRCGYC 1 cut(s) 645
HspAI GCGC 2 cut(s) 939, 2718
KspAI GTTAAC 1 cut(s) 1572
KspI CCGCGG 1 cut(s) 2306
LmnI GCTCC 7 cut(s) 245, 344, 446, 1199, 1258, 1447, 1832
Lsp1109I GCAGC 3 cut(s) 647, 1750, 2572
LweI GCATC 1 cut(s) 2019
MaeI CTAG 4 cut(s) 390, 831, 1914, 2973
MbiI CCGCTC 1 cut(s) 2854
MfeI CAATTG 1 cut(s) 2539
MhlI GDGCHC 4 cut(s) 362, 813, 1452, 1668
MlsI TGGCCA 1 cut(s) 3458
MluNI TGGCCA 1 cut(s) 3458
MlyI GAGTC 5 cut(s) 314, 412, 1092, 1468, 1929
MmeI TCCRAC 8 cut(s) 195, 238, 717, 826, 1221, 2463, 2824, 3271
Mox20I TGGCCA 1 cut(s) 3458
MroXI GAANNNNTTC 1 cut(s) 905
MscI TGGCCA 1 cut(s) 3458
MslI CAYNNNNRTG 2 cut(s) 333, 3458
Msp20I TGGCCA 1 cut(s) 3458
MspA1I CMGCKG 1 cut(s) 2305
MssI GTTTAAAC 2 cut(s) 1744, 2112
MunI CAATTG 1 cut(s) 2539
MvaI CCWGG 1 cut(s) 2280
MvnI CGCG 4 cut(s) 941, 1037, 2305, 2720
MwoI GCNNNNNNNGC 5 cut(s) 204, 357, 1330, 2168, 2375
NciI CCSGG 9 cut(s) 489, 490, 760, 1288, 1360, 1648, 1753, 3150, 3481
NlaIV GGNNCC 4 cut(s) 340, 408, 996, 1898
NmeAIII GCCGAG 2 cut(s) 922, 1647
NmuCI GTSAC 1 cut(s) 1931
NspI RCATGY 2 cut(s) 1984, 1996
PaeR7I CTCGAG 2 cut(s) 671, 3230
PciI ACATGT 2 cut(s) 1980, 1992
PcsI WCGNNNNNNNCGW 3 cut(s) 678, 1178, 1491
PdmI GAANNNNTTC 1 cut(s) 905
PfoI TCCNGGA 4 cut(s) 758, 1358, 1646, 1751
PinAI ACCGGT 3 cut(s) 1502, 1566, 1574
PkrI GCNGC 5 cut(s) 662, 1735, 1765, 2587, 2856
PleI GAGTC 5 cut(s) 313, 412, 1092, 1468, 1928
PmeI GTTTAAAC 2 cut(s) 1744, 2112
PpsI GAGTC 5 cut(s) 313, 412, 1092, 1468, 1928
PpuMI RGGWCCY 1 cut(s) 407
PscI ACATGT 2 cut(s) 1980, 1992
PshAI GACNNNNGTC 1 cut(s) 2368
PsiI TTATAA 1 cut(s) 119
Psp124BI GAGCTC 3 cut(s) 813, 1452, 1668
Psp1406I AACGTT 1 cut(s) 1181
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 2278
PspFI CCCAGC 1 cut(s) 2921
PspGI CCWGG 1 cut(s) 2278
PspN4I GGNNCC 4 cut(s) 340, 408, 996, 1898
PspPI GGNCC 5 cut(s) 407, 848, 1211, 2219, 2940
PspPPI RGGWCCY 1 cut(s) 407
PspXI VCTCGAGB 1 cut(s) 3230
PstI CTGCAG 3 cut(s) 1257, 1679, 3005
RsaI GTAC 8 cut(s) 187, 1107, 1534, 1790, 3133, 3145, 3447, 3538
RsaNI GTAC 8 cut(s) 186, 1106, 1533, 1789, 3132, 3144, 3446, 3537
RseI CAYNNNNRTG 2 cut(s) 333, 3458
Rsr2I CGGWCCG 1 cut(s) 1211
RsrII CGGWCCG 1 cut(s) 1211
SacI GAGCTC 3 cut(s) 813, 1452, 1668
SacII CCGCGG 1 cut(s) 2306
SatI GCNGC 5 cut(s) 661, 1734, 1764, 2586, 2855
Sau96I GGNCC 5 cut(s) 407, 848, 1211, 2219, 2940
ScaI AGTACT 1 cut(s) 1107
SchI GAGTC 5 cut(s) 314, 412, 1092, 1468, 1929
SduI GDGCHC 4 cut(s) 362, 813, 1452, 1668
SfaNI GCATC 1 cut(s) 2019
SfcI CTRYAG 3 cut(s) 1253, 1675, 3001
Sfr274I CTCGAG 2 cut(s) 671, 3230
Sfr303I CCGCGG 1 cut(s) 2306
SgrAI CRCCGGYG 1 cut(s) 911
SgrBI CCGCGG 1 cut(s) 2306
SinI GGWCC 5 cut(s) 407, 848, 1211, 2219, 2940
SlaI CTCGAG 2 cut(s) 671, 3230
SmaI CCCGGG 1 cut(s) 490
SmiMI CAYNNNNRTG 2 cut(s) 333, 3458
SmlI CTYRAG 7 cut(s) 671, 812, 1339, 1622, 1847, 2569, 3230
SmoI CTYRAG 7 cut(s) 671, 812, 1339, 1622, 1847, 2569, 3230
SspMI CTAG 4 cut(s) 390, 831, 1914, 2973
SstI GAGCTC 3 cut(s) 813, 1452, 1668
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 6 cut(s) 989, 1316, 1532, 2330, 3218, 3501
TaqII GACCGA 1 cut(s) 3451
TatI WGTACW 4 cut(s) 185, 1105, 3131, 3536
TauI GCSGC 2 cut(s) 1736, 2857
TscAI CASTG 4 cut(s) 271, 643, 712, 961
TseFI GTSAC 1 cut(s) 1931
TseI GCWGC 3 cut(s) 660, 1763, 2585
Tsp45I GTSAC 1 cut(s) 1931
TspGWI ACGGA 4 cut(s) 331, 2201, 2476, 3272
TspMI CCCGGG 1 cut(s) 488
TspRI CASTG 4 cut(s) 271, 643, 712, 961
VpaK11BI GGWCC 5 cut(s) 407, 848, 1211, 2219, 2940
XapI RAATTY 3 cut(s) 547, 905, 3058
XbaI TCTAGA 1 cut(s) 389
XceI RCATGY 2 cut(s) 1984, 1996
XhoI CTCGAG 2 cut(s) 671, 3230
XmaI CCCGGG 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 4 cut(s) 390, 831, 1914, 2973
ZraI GACGTC 1 cut(s) 646
ZrmI AGTACT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.