Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012455

Physical Location & Seq

Genomic Coordinates Forward (+)

20495399 .. 20496190

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTAGATTTTGCAGCAAAGCATAACATCACAGCTGATGTTGAAGTCATTCCAATGGATTATGTGAACACTGCTCTTGAAAGATTACCACGTCTAGAGGAGACGACGGCACAACGCCATCTCCGTCGAGATTATCATGCTGGAACCTGCTCTCTCGACGGCACGATGCTTCGAATGGTCTCTCTCAAGGTGGAACTTGCTTTTGCGAGGGACGTATTTCTAGATAGCATCAGTGGGATTGAAGTAGAAGACCAATTGGTCTTGGAAGATGTTGAGGACAATCACGATGAAGCCGGCGATGCAGTTGAAGATGAAGTCGCAGGTCCAAAGGCGGTGAGAAGAGGTGAAGAGGAAAGGGAGAGTGAAGATCAGAGAGTGGGTGGGAGTGCCTATGGCTGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009593 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0009987 GO:0010008 GO:0010033 GO:0010208 GO:0010224 GO:0010268 GO:0010584 GO:0010927 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022607 GO:0023052 GO:0030154 GO:0030198 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0042802 GO:0042803 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046982 GO:0046983 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0048582 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051606 GO:0051716 GO:0055088 GO:0060548 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1905392 GO:1905393 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

134

Amino Acids

14.95

Weight (kDa)

4.42

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39400
fragaria_vesca	FvH4_1g23130
malus_domestica	MD01G1014200.v1.1 MD15G1336800.v1.1
prunus_persica	Prupe.6G168100_v2.0.a1
pyrus_communis	pycom01g04600 pycom15g28930
rosa_chinensis	RchiOBHm_Chr2g0117851
rosa_laevigata	RLG00000018379
rosa_multiflora	Rmu_co8475017.1_g000001 Rmu_sc0012910.1_g000002 Rmu_sc0022025.1_g000002
rosa_rugosa	Rorug02G0214500
rosa_samantha	Rh2AG270700 Rh2BG282200 Rh2CG268900 Rh2DG278500 Rh2DG296400
rosa_wichuraiana	Rw2G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
Acc36I	ACCTGC	2 cut(s)	155, 311
AciI	CCGC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	4 cut(s)	44, 80, 242, 308
AjiI	CACGTC	1 cut(s)	92
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw26I	GTCTC	2 cut(s)	95, 184
ApeKI	GCWGC	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	346, 356
AsuII	TTCGAA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	2 cut(s)	123, 175
BcoDI	GTCTC	2 cut(s)	95, 184
BfaI	CTAG	2 cut(s)	95, 221
BfuAI	ACCTGC	2 cut(s)	155, 311
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	3 cut(s)	156, 237, 289
BpiI	GAAGAC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse118I	RCCGGY	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	2 cut(s)	95, 184
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	184
Bsp119I	TTCGAA	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	145
BspMI	ACCTGC	2 cut(s)	155, 311
BspT104I	TTCGAA	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	334, 342
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	95, 184
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 238
BveI	ACCTGC	2 cut(s)	155, 311
Cac8I	GCNNGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	323
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	3 cut(s)	35, 293, 396
CviKI_1	RGCY	3 cut(s)	35, 293, 396
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	2 cut(s)	334, 342
EarI	CTCTTC	2 cut(s)	334, 342
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	140
FaiI	YATR	4 cut(s)	24, 63, 138, 393
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	95, 221
GluI	GCNGC	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	400
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	1 cut(s)	140
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	346, 356
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	6 cut(s)	77, 95, 128, 155, 221, 284
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	3 cut(s)	109, 129, 161
HpyCH4IV	ACGT	2 cut(s)	91, 213
HpyCH4V	TGCA	2 cut(s)	14, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpySE526I	ACGT	2 cut(s)	91, 213
Hsp92II	CATG	1 cut(s)	140
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	367
LpnPI	CCDG	5 cut(s)	126, 160, 306, 307, 382
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	3 cut(s)	156, 237, 289
MaeI	CTAG	2 cut(s)	95, 221
MaeII	ACGT	2 cut(s)	91, 213
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	6 cut(s)	260, 278, 320, 351, 359, 377
MfeI	CAATTG	1 cut(s)	254
MluCI	AATT	1 cut(s)	254
MnlI	CCTC	5 cut(s)	91, 201, 268, 335, 343
MroNI	GCCGGC	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	299
NaeI	GCCGGC	1 cut(s)	295
NdeII	GATC	1 cut(s)	367
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PdiI	GCCGGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	323
SetI	ASST	7 cut(s)	37, 94, 149, 192, 216, 325, 346
SfaNI	GCATC	3 cut(s)	156, 237, 289
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	2 cut(s)	95, 221
TaiI	ACGT	2 cut(s)	94, 216
TaqI	TCGA	3 cut(s)	127, 156, 172
TasI	AATT	1 cut(s)	254
TscAI	CASTG	2 cut(s)	76, 238
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	303, 327
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	2 cut(s)	76, 238
VpaK11BI	GGWCC	1 cut(s)	323
XbaI	TCTAGA	2 cut(s)	94, 220
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	95, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.