Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Reverse (-)

18332606 .. 18334893

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGTGCGATAAACCAAGGAATAAGCTTGTTTGATGAATCACAAACCGTCATAAACCCTATTAATACCAACCATCTAGGTTTCTTCTTCTCTTTCCCTAGTCACAGCACCTTATCTTCATCATCTTCGTCGTCTTCGTCTTCTCCTTCTTCTCTTGTGTCTCCATTTCTTGGTCATAACTCCCTAAACTCCTTCCTTCATAATAACCCGTCTTCATTCATAAGTCATCCTCAAGATTCCATCAATCTCATGACCAATCTCCCCGAAACCCTAATCTCGTCTTTGTCCTCATCAAAGCAAAGGGACGATCATGATGGTTTTCTTAATCTCGATCATCATCGTCTTACCGGTAGTATTTCATCCCAAAGACCCCTGTCAAATCCATGGGCATGGAGTTGTCAAGCGGGATACGGAAGCAGCCAGAAAAACAACCATGGAAGCGAGATTGATGTTGATGATAATGATGATGAGGTTGGCGATGGTGGTGGCATTAATGATGATGATAATGGTCGTCATCATCATCATGATACTCCCAGTCGTCATGATAAACATAACACAGCGTCATTAGGCGTAGTTTCTTCTCTGAAGATGAAGAAGCTTAAGACAAGAAGAAAAGTGAGGGAACCTCGGTTTTGCTTTAAGACACTTAGCGAGGTTGATGTCTTAGATGATGGATATAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAAAACACCCAACATCCCAGGAGCTATTACAGATGCACACAAGACAAGTGTAGAGTGAAGAAGAGAGTGGAGAGATTAGCAGATGACCCAAGAATGGTAATCACTACTTACGAAGGAAGACACCTTCACTCTCCTTCTAATCATCTCGACGACGACTCTCTCTCCACCTCTCACCTGCACCCTCCTCTCTCCAACTTCTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

304

Amino Acids

34.2

Weight (kDa)

7.07

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	223 - 279	9.5e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	891
Acc36I	ACCTGC	1 cut(s)	891
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	605
AfiI	CCNNNNNNNGG	2 cut(s)	170, 802
AflII	CTTAAG	1 cut(s)	599
AgeI	ACCGGT	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	725
AluBI	AGCT	3 cut(s)	27, 598, 732
AluI	AGCT	3 cut(s)	27, 598, 732
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	694
ApeKI	GCWGC	1 cut(s)	417
AseI	ATTAAT	2 cut(s)	63, 492
AsiGI	ACCGGT	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	872
BalI	TGGCCA	1 cut(s)	696
BbsI	GAAGAC	4 cut(s)	126, 132, 204, 832
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	6 cut(s)	81, 248, 308, 473, 665, 675
BciT130I	CCWGG	1 cut(s)	727
BciVI	GTATCC	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	77, 99
BfrI	CTTAAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	891
BfuI	GTATCC	1 cut(s)	401
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	727
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	1 cut(s)	727
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	731
BmuI	ACTGGG	1 cut(s)	528
BoxI	GACNNNNGTC	1 cut(s)	373
BpiI	GAAGAC	4 cut(s)	126, 132, 204, 832
BplI	GAGNNNNNCTC	2 cut(s)	610, 642
BpuEI	CTTGAG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	336
BsaJI	CCNNGG	5 cut(s)	16, 383, 433, 626, 725
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	854, 884
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 802
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	5 cut(s)	16, 383, 433, 626, 725
BseGI	GGATG	3 cut(s)	226, 359, 721
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	170, 802
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	882
BseXI	GCAGC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	869
BshFI	GGCC	1 cut(s)	696
BshTI	ACCGGT	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	170, 802
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	696
Bsp143I	GATC	2 cut(s)	307, 331
Bsp19I	CCATGG	2 cut(s)	383, 433
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	696
BspHI	TCATGA	4 cut(s)	249, 310, 523, 541
BspLI	GGNNCC	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	891
BspTI	CTTAAG	1 cut(s)	599
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	5 cut(s)	16, 383, 433, 626, 725
BssMI	GATC	2 cut(s)	307, 331
BssT1I	CCWWGG	3 cut(s)	16, 383, 433
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	764
BstAFI	CTTAAG	1 cut(s)	599
BstDEI	CTNAG	2 cut(s)	647, 664
BstDSI	CCRYGG	2 cut(s)	383, 433
BstF5I	GGATG	3 cut(s)	226, 359, 721
BstKTI	GATC	2 cut(s)	310, 334
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	307, 331
BstNI	CCWGG	1 cut(s)	727
BstPAI	GACNNNNGTC	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	725
BstV1I	GCAGC	1 cut(s)	429
BstV2I	GAAGAC	4 cut(s)	126, 132, 204, 832
BstXI	CCANNNNNNTGG	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	696
BtgI	CCRYGG	2 cut(s)	383, 433
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	226, 359, 721
BveI	ACCTGC	1 cut(s)	891
CciI	TCATGA	4 cut(s)	249, 310, 523, 541
Cfr10I	RCCGGY	1 cut(s)	347
CseI	GACGC	1 cut(s)	549
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	7 cut(s)	250, 311, 384, 390, 434, 524, 542
CviJI	RGCY	5 cut(s)	27, 420, 598, 696, 732
CviKI_1	RGCY	5 cut(s)	27, 420, 598, 696, 732
DdeI	CTNAG	2 cut(s)	647, 664
DpnI	GATC	2 cut(s)	309, 333
DpnII	GATC	2 cut(s)	307, 331
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
Eco130I	CCWWGG	3 cut(s)	16, 383, 433
Eco57I	CTGAAG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	725
EcoT14I	CCWWGG	3 cut(s)	16, 383, 433
ErhI	CCWWGG	3 cut(s)	16, 383, 433
FaeI	CATG	7 cut(s)	253, 314, 387, 393, 437, 527, 545
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	7 cut(s)	249, 310, 383, 389, 433, 523, 541
FauI	CCCGC	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	418
FokI	GGATG	3 cut(s)	213, 346, 708
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	2 cut(s)	77, 99
GluI	GCNGC	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	696
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	549
Hin1II	CATG	7 cut(s)	253, 314, 387, 393, 437, 527, 545
HindIII	AAGCTT	2 cut(s)	25, 596
HinfI	GANTC	3 cut(s)	38, 236, 863
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	872
Hpy188I	TCNGA	1 cut(s)	585
Hpy188III	TCNNGA	7 cut(s)	233, 250, 311, 329, 524, 542, 854
Hpy99I	CGWCG	3 cut(s)	133, 860, 863
HpyAV	CCTTC	6 cut(s)	156, 202, 206, 815, 842, 852
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	744, 886
HpyF3I	CTNAG	2 cut(s)	647, 664
Hsp92II	CATG	7 cut(s)	253, 314, 387, 393, 437, 527, 545
Kzo9I	GATC	2 cut(s)	307, 331
LmnI	GCTCC	1 cut(s)	729
LpnPI	CCDG	9 cut(s)	361, 386, 434, 547, 710, 712, 739, 895, 896
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	1 cut(s)	731
MaeI	CTAG	2 cut(s)	77, 99
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	309, 333
MboI	GATC	2 cut(s)	307, 331
MlsI	TGGCCA	1 cut(s)	696
MluNI	TGGCCA	1 cut(s)	696
MlyI	GAGTC	1 cut(s)	857
MnlI	CCTC	9 cut(s)	240, 298, 463, 612, 636, 646, 886, 900, 903
Mox20I	TGGCCA	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	696
MseI	TTAA	5 cut(s)	63, 324, 492, 600, 639
MslI	CAYNNNNRTG	2 cut(s)	388, 522
Msp20I	TGGCCA	1 cut(s)	696
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	727
NcoI	CCATGG	2 cut(s)	383, 433
NdeII	GATC	2 cut(s)	307, 331
NlaIII	CATG	7 cut(s)	253, 314, 387, 393, 437, 527, 545
NlaIV	GGNNCC	1 cut(s)	624
NmuCI	GTSAC	1 cut(s)	101
PagI	TCATGA	4 cut(s)	249, 310, 523, 541
PaqCI	CACCTGC	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	38, 236
PflMI	CCANNNNNTGG	1 cut(s)	170
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	419
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PshAI	GACNNNNGTC	1 cut(s)	373
PshBI	ATTAAT	2 cut(s)	63, 492
Psp6I	CCWGG	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	725
PspN4I	GGNNCC	1 cut(s)	624
RseI	CAYNNNNRTG	2 cut(s)	388, 522
SaqAI	TTAA	5 cut(s)	63, 324, 492, 600, 639
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	2 cut(s)	307, 331
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	1 cut(s)	727
SfaNI	GCATC	1 cut(s)	731
SmiMI	CAYNNNNRTG	2 cut(s)	388, 522
SmlI	CTYRAG	2 cut(s)	231, 599
SmoI	CTYRAG	2 cut(s)	231, 599
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	77, 99
StyD4I	CCNGG	1 cut(s)	725
StyI	CCWWGG	3 cut(s)	16, 383, 433
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	330, 855
TfiI	GAWTC	2 cut(s)	38, 236
Tru1I	TTAA	5 cut(s)	63, 324, 492, 600, 639
Tru9I	TTAA	5 cut(s)	63, 324, 492, 600, 639
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	7 cut(s)	51, 108, 188, 204, 208, 348, 605
TspGWI	ACGGA	1 cut(s)	426
Van91I	CCANNNNNTGG	1 cut(s)	170
Vha464I	CTTAAG	1 cut(s)	599
VspI	ATTAAT	2 cut(s)	63, 492
XspI	CTAG	2 cut(s)	77, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.