Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Forward (+)

14958489 .. 14962857

Gene Structure 4369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23082.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACACAGTCGACCATGCTGAACCAGCGGGGCTTGTTTGATCAGAATCAAGATCAGGCTCCTATACAGATGGGTTTCTTTTCCTACCCACCAAATAACTTGACCTTTTCATCGTTGGGATGTCAACAATCTGTCAAAGCCTTGAGTTCCTTACCTTCTTCACTTGGTTCTGATGATCACCATGCATCTTCAACCAATCTTTCTGAAACCCTAATCCCATCTCTCAATACTCCTCAAAAGCATAGAGAAACTCATATCACTTCTGATTTTGGAGGATCCCAACTCCTTTCTTTGCAAAGATCAAGTGCAAATCTCTGGGCATGGGGAGATCAGGTGAGTGAATGCCTGAGCAGCAAGAGATCATCAAGCGATATTCATGATCATCATCATGTAGGATTAGGGGTTTCAGAGATGAAGATGAAGAAGATAAAGGCTATTCGGAGGAAAGTGAGGGAACCCAGGTTTTGCTTCAAGACAATGAGCGAAGTTGATGTGCTTGATGATGGATACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCCAGGAGCTATTATCGTTGCACAATGGACAACTGCCGAGTAAAGAAACGCGTAGAGAGATTAGCTGAGGACCCGAGAATGGTGATTACAACGTATGAAGGGAGACACGCACATTCTCCATCTCATGATCTTGAAGATTCCGAATCCCCATCTCGCCTAAATAATTTCTTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

244

Amino Acids

27.8

Weight (kDa)

9.08

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	167 - 223	5e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	606
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	2 cut(s)	270, 283
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	3 cut(s)	192, 472, 689
AjnI	CCWGG	2 cut(s)	458, 557
AluBI	AGCT	2 cut(s)	564, 620
AluI	AGCT	2 cut(s)	564, 620
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	2 cut(s)	270, 283
Ama87I	CYCGRG	1 cut(s)	628
ApeKI	GCWGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	625
AsuHPI	GGTGA	3 cut(s)	170, 346, 649
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	625
BamHI	GGATCC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	5 cut(s)	64, 226, 497, 682, 712
BciT130I	CCWGG	2 cut(s)	460, 559
BciVI	GTATCC	1 cut(s)	500
BclI	TGATCA	3 cut(s)	40, 175, 379
BcoDI	GTCTC	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	500
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	460, 559
Bme18I	GGWCC	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	4 cut(s)	60, 277, 456, 627
BmrFI	CCNGG	2 cut(s)	460, 559
BmsI	GCATC	2 cut(s)	194, 562
Bpu10I	CCTNAGC	2 cut(s)	347, 621
BpuEI	CTTGAG	1 cut(s)	163
BsaBI	GATNNNNATC	2 cut(s)	45, 384
BsaJI	CCNNGG	2 cut(s)	458, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse8I	GATNNNNATC	2 cut(s)	45, 384
BseBI	CCWGG	2 cut(s)	460, 559
BseDI	CCNNGG	2 cut(s)	458, 557
BseGI	GGATG	2 cut(s)	125, 553
BseJI	GATNNNNATC	2 cut(s)	45, 384
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMII	CTCAG	2 cut(s)	338, 612
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	628
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	628
Bsp143I	GATC	9 cut(s)	40, 52, 175, 275, 299, 328, 359, 379, 682
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	339, 613
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	2 cut(s)	376, 679
BspLI	GGNNCC	4 cut(s)	60, 277, 456, 627
BspPI	GGATC	2 cut(s)	270, 283
BssECI	CCNNGG	2 cut(s)	458, 557
BssMI	GATC	9 cut(s)	40, 52, 175, 275, 299, 328, 359, 379, 682
Bst2UI	CCWGG	2 cut(s)	460, 559
Bst4CI	ACNGT	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	347, 621
BstF5I	GGATG	2 cut(s)	125, 553
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	9 cut(s)	43, 55, 178, 278, 302, 331, 362, 382, 685
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	9 cut(s)	40, 52, 175, 275, 299, 328, 359, 379, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 351
BstNI	CCWGG	2 cut(s)	460, 559
BstSCI	CCNGG	2 cut(s)	458, 557
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	125, 553
CciI	TCATGA	2 cut(s)	376, 679
Cfr13I	GGNCC	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	6 cut(s)	16, 182, 321, 377, 389, 680
CviJI	RGCY	6 cut(s)	33, 59, 140, 434, 564, 620
CviKI_1	RGCY	6 cut(s)	33, 59, 140, 434, 564, 620
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	347, 621
DpnI	GATC	9 cut(s)	42, 54, 177, 277, 301, 330, 361, 381, 684
DpnII	GATC	9 cut(s)	40, 52, 175, 275, 299, 328, 359, 379, 682
Eco47I	GGWCC	1 cut(s)	625
Eco88I	CYCGRG	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	458, 557
EcoT22I	ATGCAT	1 cut(s)	187
FaeI	CATG	6 cut(s)	19, 185, 324, 380, 392, 683
FatI	CATG	6 cut(s)	15, 181, 320, 376, 388, 679
FauI	CCCGC	1 cut(s)	21
FbaI	TGATCA	3 cut(s)	40, 175, 379
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	352
FokI	GGATG	2 cut(s)	132, 540
Fsp4HI	GCNGC	1 cut(s)	352
GluI	GCNGC	1 cut(s)	352
Hin1II	CATG	6 cut(s)	19, 185, 324, 380, 392, 683
HincII	GTYRAC	2 cut(s)	12, 125
HindII	GTYRAC	2 cut(s)	12, 125
HinfI	GANTC	3 cut(s)	46, 692, 698
HphI	GGTGA	3 cut(s)	170, 346, 649
Hpy166II	GTNNAC	2 cut(s)	12, 125
Hpy188I	TCNGA	7 cut(s)	45, 172, 205, 265, 409, 441, 697
Hpy188III	TCNNGA	5 cut(s)	50, 377, 472, 680, 686
Hpy8I	GTNNAC	2 cut(s)	12, 125
HpyAV	CCTTC	2 cut(s)	165, 647
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	4 cut(s)	185, 295, 308, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 351
HpyF3I	CTNAG	2 cut(s)	347, 621
HpySE526I	ACGT	1 cut(s)	647
Hsp92II	CATG	6 cut(s)	19, 185, 324, 380, 392, 683
Ksp22I	TGATCA	3 cut(s)	40, 175, 379
Kzo9I	GATC	9 cut(s)	40, 52, 175, 275, 299, 328, 359, 379, 682
LmnI	GCTCC	2 cut(s)	64, 561
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	2 cut(s)	194, 562
MaeII	ACGT	1 cut(s)	647
MalI	GATC	9 cut(s)	42, 54, 177, 277, 301, 330, 361, 381, 684
MboI	GATC	9 cut(s)	40, 52, 175, 275, 299, 328, 359, 379, 682
MboII	GAAGA	7 cut(s)	150, 180, 427, 433, 436, 701, 715
MflI	RGATCY	1 cut(s)	275
MluCI	AATT	1 cut(s)	718
MluI	ACGCGT	1 cut(s)	604
MnlI	CCTC	6 cut(s)	243, 266, 435, 444, 510, 616
Mph1103I	ATGCAT	1 cut(s)	187
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	460, 559
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	460, 559
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	25, 351
NdeII	GATC	9 cut(s)	40, 52, 175, 275, 299, 328, 359, 379, 682
NlaIII	CATG	6 cut(s)	19, 185, 324, 380, 392, 683
NlaIV	GGNNCC	4 cut(s)	60, 277, 456, 627
NmeAIII	GCCGAG	1 cut(s)	617
NsiI	ATGCAT	1 cut(s)	187
PagI	TCATGA	2 cut(s)	376, 679
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	46, 692, 698
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	353
PpuMI	RGGWCCY	1 cut(s)	625
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	2 cut(s)	458, 557
PspGI	CCWGG	2 cut(s)	458, 557
PspN4I	GGNNCC	4 cut(s)	60, 277, 456, 627
PspPI	GGNCC	1 cut(s)	625
PspPPI	RGGWCCY	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	275
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	387
SalI	GTCGAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	9 cut(s)	40, 52, 175, 275, 299, 328, 359, 379, 682
Sau96I	GGNCC	1 cut(s)	625
ScrFI	CCNGG	2 cut(s)	460, 559
SetI	ASST	7 cut(s)	107, 157, 336, 464, 566, 622, 650
SfaNI	GCATC	2 cut(s)	194, 562
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	718
SsiI	CCGC	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	458, 557
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	650
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	718
TfiI	GAWTC	3 cut(s)	46, 692, 698
TseI	GCWGC	1 cut(s)	351
TspDTI	ATGAA	5 cut(s)	99, 365, 428, 434, 666
TspGWI	ACGGA	1 cut(s)	540
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.