Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Forward (+)

25317843 .. 25322933

Gene Structure 5091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28900.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTATGATGTATTAATACAATCTAAACTTTGCGTATGGTTGTTTCCCAGAAAGATTTACCTGGATTATCATCTCCCTACAAGATATACAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCATCTAGAACGTCCCAGGCAGCCATTCTCAACCACCACCACCACCACCAACCGCTGGGTTTGTTTGAGAATCAAGAGGGAGAGGGTTGTAATACACAGATGGATTTCTTTCCTTTCCCACAAAACTTGACCTTTTCATCGTTGCCCTTGGTAGGTCACCAATCTCTCAAAGGCGGCTTGAGCACGGCTAGCATAGCTTCTGATGATGCACCTTCAACTACCACTCTCTCTGAAACCCTAGTCCCCCGGCCATCACTTACTCCTCCACTGAGGCATAAACAAGATCATAACATCACTACTAGTTCTGAATTTGGTGGAGGAGGAGGAGGAGGAGGAGGACCCCATGGCCATCTCCTTTCTCTGCAAAGATCCACCGCAAATCTCTGGGCATGGGGAGACGCGAGTGATGAGTACTGCCTGAACAGCAAGAGATCAAGCGGCGGAGACGACAGCCATCATCCTTATTTAGGAGGGCTTTCGGCAATGAAGATGAAGAAGATGAAGGCAAATAGGAGGAAGGTAAGAGAGCCTAGGTTTTGCTTCAAAACCCTGAGCGATGTCGATGTGCTTGATGATGGTTACAAGTGGAGAAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCAAGGCTAGAAACGAGTAGAGCGATTAGCCGAGGACCCGAGGATGGTGATCATCTGAGCTCAACGTATGAAGGGAGACACGTACATTCTCCATCTCATGATCTTGATGATCAAGATTCACGATCTCCGTCGCACCTGAACAACTTCTTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

306

Amino Acids

34.5

Weight (kDa)

7.82

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccII	CGCG	1 cut(s)	536
AciI	CCGC	5 cut(s)	188, 309, 510, 573, 576
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	2 cut(s)	383, 481
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	3 cut(s)	548, 731, 846
AfiI	CCNNNNNNNGG	4 cut(s)	190, 287, 602, 806
AflIII	ACRYGT	1 cut(s)	841
AgsI	TTSAA	2 cut(s)	351, 679
AhlI	ACTAGT	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	60, 150
AluBI	AGCT	2 cut(s)	332, 822
AluI	AGCT	2 cut(s)	332, 822
Alw21I	GWGCWC	2 cut(s)	320, 824
Alw26I	GTCTC	3 cut(s)	525, 573, 832
AlwI	GGATC	1 cut(s)	498
Ama87I	CYCGRG	1 cut(s)	800
AoxI	GGCC	2 cut(s)	383, 481
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	443
AseI	ATTAAT	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	905
AspA2I	CCTAGG	1 cut(s)	665
AspS9I	GGNCC	2 cut(s)	473, 797
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	284, 821
AsuNHI	GCTAGC	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	800
AvaII	GGWCC	2 cut(s)	473, 797
AvrII	CCTAGG	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	824
Bbv12I	GWGCWC	2 cut(s)	320, 824
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	8 cut(s)	127, 229, 394, 492, 597, 704, 800, 862
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	2 cut(s)	62, 152
BclI	TGATCA	2 cut(s)	811, 871
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	3 cut(s)	525, 573, 832
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	6 cut(s)	141, 324, 374, 435, 666, 770
BisI	GCNGC	3 cut(s)	156, 310, 574
BlnI	CCTAGG	1 cut(s)	665
BlsI	GCNGC	3 cut(s)	157, 311, 575
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	3 cut(s)	62, 152, 382
Bme18I	GGWCC	2 cut(s)	473, 797
BmeT110I	CYCGRG	1 cut(s)	800
BmgT120I	GGNCC	2 cut(s)	473, 797
BmiI	GGNNCC	2 cut(s)	475, 799
BmrFI	CCNGG	3 cut(s)	62, 152, 382
BmsI	GCATC	3 cut(s)	146, 331, 769
BmtI	GCTAGC	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	382
BsaAI	YACGTR	1 cut(s)	844
BsaBI	GATNNNNATC	2 cut(s)	69, 810
BsaJI	CCNNGG	8 cut(s)	150, 282, 380, 478, 665, 764, 793, 801
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 287, 602, 806
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	2 cut(s)	69, 810
BseBI	CCWGG	2 cut(s)	62, 152
BseDI	CCNNGG	8 cut(s)	150, 282, 380, 478, 665, 764, 793, 801
BseGI	GGATG	3 cut(s)	592, 760, 811
BseJI	GATNNNNATC	2 cut(s)	69, 810
BseLI	CCNNNNNNNGG	4 cut(s)	190, 287, 602, 806
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	3 cut(s)	395, 677, 809
BseRI	GAGGAG	7 cut(s)	387, 468, 471, 474, 477, 480, 483
BseXI	GCAGC	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	2 cut(s)	385, 483
BsiHKAI	GWGCWC	2 cut(s)	320, 824
BsiHKCI	CYCGRG	1 cut(s)	800
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	2 cut(s)	133, 362
BslI	CCNNNNNNNGG	4 cut(s)	190, 287, 602, 806
BsmAI	GTCTC	3 cut(s)	525, 573, 832
BsmBI	CGTCTC	2 cut(s)	525, 573
BsmFI	GGGAC	2 cut(s)	133, 362
BsnI	GGCC	2 cut(s)	385, 483
BsoBI	CYCGRG	1 cut(s)	800
Bsp1286I	GDGCHC	2 cut(s)	320, 824
Bsp143I	GATC	7 cut(s)	418, 503, 566, 811, 862, 871, 884
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	5 cut(s)	188, 309, 510, 573, 576
BspANI	GGCC	2 cut(s)	385, 483
BspCNI	CTCAG	3 cut(s)	396, 678, 810
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	475, 799
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	624
BssECI	CCNNGG	8 cut(s)	150, 282, 380, 478, 665, 764, 793, 801
BssMI	GATC	7 cut(s)	418, 503, 566, 811, 862, 871, 884
BssT1I	CCWWGG	4 cut(s)	282, 478, 665, 764
Bst2UI	CCWGG	2 cut(s)	62, 152
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	404, 686, 818
BstDSI	CCRYGG	1 cut(s)	478
BstEII	GGTNACC	1 cut(s)	290
BstENI	CCTNNNNNAGG	1 cut(s)	600
BstF5I	GGATG	3 cut(s)	592, 760, 811
BstFNI	CGCG	1 cut(s)	536
BstKTI	GATC	7 cut(s)	421, 506, 569, 814, 865, 874, 887
BstMAI	GTCTC	3 cut(s)	525, 573, 832
BstMBI	GATC	7 cut(s)	418, 503, 566, 811, 862, 871, 884
BstMWI	GCNNNNNNNGC	5 cut(s)	315, 324, 329, 558, 766
BstNI	CCWGG	2 cut(s)	62, 152
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	60, 150, 380
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	385, 483
BtgI	CCRYGG	1 cut(s)	478
BtgZI	GCGATG	1 cut(s)	705
BtsCI	GGATG	3 cut(s)	592, 760, 811
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	325
CciI	TCATGA	1 cut(s)	859
Cfr13I	GGNCC	2 cut(s)	473, 797
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	547, 730, 845
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	3 cut(s)	479, 525, 860
CviQI	GTAC	3 cut(s)	547, 730, 845
DdeI	CTNAG	3 cut(s)	404, 686, 818
DpnI	GATC	7 cut(s)	420, 505, 568, 813, 864, 873, 886
DpnII	GATC	7 cut(s)	418, 503, 566, 811, 862, 871, 884
EaeI	YGGCCR	2 cut(s)	383, 481
EciI	GGCGGA	1 cut(s)	591
Ecl136II	GAGCTC	1 cut(s)	822
Eco130I	CCWWGG	4 cut(s)	282, 478, 665, 764
Eco24I	GRGCYC	1 cut(s)	824
Eco47I	GGWCC	2 cut(s)	473, 797
Eco53kI	GAGCTC	1 cut(s)	822
Eco88I	CYCGRG	1 cut(s)	800
Eco91I	GGTNACC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	822
EcoNI	CCTNNNNNAGG	1 cut(s)	600
EcoO109I	RGGNCCY	2 cut(s)	473, 797
EcoO65I	GGTNACC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	60, 150
EcoT14I	CCWWGG	4 cut(s)	282, 478, 665, 764
EcoT38I	GRGCYC	1 cut(s)	824
ErhI	CCWWGG	4 cut(s)	282, 478, 665, 764
Esp3I	CGTCTC	2 cut(s)	525, 573
FaeI	CATG	3 cut(s)	482, 528, 863
FaqI	GGGAC	2 cut(s)	133, 362
FatI	CATG	3 cut(s)	478, 524, 859
FbaI	TGATCA	2 cut(s)	811, 871
Fnu4HI	GCNGC	3 cut(s)	156, 310, 574
FokI	GGATG	3 cut(s)	579, 747, 818
FriOI	GRGCYC	1 cut(s)	824
Fsp4HI	GCNGC	3 cut(s)	156, 310, 574
FspBI	CTAG	6 cut(s)	141, 324, 374, 435, 666, 770
GluI	GCNGC	3 cut(s)	156, 310, 574
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	385, 483
HapII	CCGG	1 cut(s)	382
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	3 cut(s)	482, 528, 863
HinfI	GANTC	2 cut(s)	205, 878
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	284, 821
Hpy188I	TCNGA	4 cut(s)	337, 367, 442, 819
Hpy188III	TCNNGA	6 cut(s)	141, 209, 860, 866, 875, 882
Hpy99I	CGWCG	1 cut(s)	895
HpyAV	CCTTC	4 cut(s)	357, 631, 646, 827
HpyCH4IV	ACGT	3 cut(s)	146, 827, 843
HpyCH4V	TGCA	2 cut(s)	344, 499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	315, 324, 329, 558, 766
HpyF3I	CTNAG	3 cut(s)	404, 686, 818
HpySE526I	ACGT	3 cut(s)	146, 827, 843
Hsp92II	CATG	3 cut(s)	482, 528, 863
Ksp22I	TGATCA	2 cut(s)	811, 871
Kzo9I	GATC	7 cut(s)	418, 503, 566, 811, 862, 871, 884
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	3 cut(s)	146, 331, 769
MaeI	CTAG	6 cut(s)	141, 324, 374, 435, 666, 770
MaeII	ACGT	3 cut(s)	146, 827, 843
MaeIII	GTNAC	2 cut(s)	290, 713
MalI	GATC	7 cut(s)	420, 505, 568, 813, 864, 873, 886
MboI	GATC	7 cut(s)	418, 503, 566, 811, 862, 871, 884
MboII	GAAGA	4 cut(s)	634, 640, 643, 901
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	2 cut(s)	320, 824
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	1 cut(s)	443
MluNI	TGGCCA	1 cut(s)	483
Mox20I	TGGCCA	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	905
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	3 cut(s)	62, 152, 382
MvaI	CCWGG	2 cut(s)	62, 152
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	5 cut(s)	315, 324, 329, 558, 766
NciI	CCSGG	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	7 cut(s)	418, 503, 566, 811, 862, 871, 884
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	482, 528, 863
NlaIV	GGNNCC	2 cut(s)	475, 799
NmeAIII	GCCGAG	1 cut(s)	818
NmuCI	GTSAC	1 cut(s)	290
PagI	TCATGA	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	782
PdmI	GAANNNNTTC	1 cut(s)	905
PfeI	GAWTC	2 cut(s)	205, 878
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	157, 311, 575
Ppu21I	YACGTR	1 cut(s)	844
PpuMI	RGGWCCY	2 cut(s)	473, 797
PshBI	ATTAAT	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	824
Psp5II	RGGWCCY	2 cut(s)	473, 797
Psp6I	CCWGG	2 cut(s)	60, 150
PspEI	GGTNACC	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	2 cut(s)	60, 150
PspN4I	GGNNCC	2 cut(s)	475, 799
PspPI	GGNCC	2 cut(s)	473, 797
PspPPI	RGGWCCY	2 cut(s)	473, 797
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	3 cut(s)	548, 731, 846
RsaNI	GTAC	3 cut(s)	547, 730, 845
SacI	GAGCTC	1 cut(s)	824
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	3 cut(s)	156, 310, 574
Sau3AI	GATC	7 cut(s)	418, 503, 566, 811, 862, 871, 884
Sau96I	GGNCC	2 cut(s)	473, 797
ScaI	AGTACT	1 cut(s)	548
ScrFI	CCNGG	3 cut(s)	62, 152, 382
SduI	GDGCHC	2 cut(s)	320, 824
SfaNI	GCATC	3 cut(s)	146, 331, 769
SinI	GGWCC	2 cut(s)	473, 797
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	5 cut(s)	188, 309, 510, 573, 576
SspMI	CTAG	6 cut(s)	141, 324, 374, 435, 666, 770
SstI	GAGCTC	1 cut(s)	824
StyD4I	CCNGG	3 cut(s)	60, 150, 380
StyI	CCWWGG	4 cut(s)	282, 478, 665, 764
TaiI	ACGT	3 cut(s)	149, 830, 846
TaqI	TCGA	1 cut(s)	696
TasI	AATT	1 cut(s)	443
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	2 cut(s)	312, 576
TfiI	GAWTC	2 cut(s)	205, 878
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	5 cut(s)	261, 635, 641, 650, 846
TspGWI	ACGGA	2 cut(s)	747, 879
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	473, 797
VspI	ATTAAT	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	600
XapI	RAATTY	1 cut(s)	443
XbaI	TCTAGA	1 cut(s)	140
XmaJI	CCTAGG	1 cut(s)	665
XmnI	GAANNNNTTC	1 cut(s)	905
XspI	CTAG	6 cut(s)	141, 324, 374, 435, 666, 770
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.