Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Reverse (-)

29284769 .. 29288224

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG269900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACATCCACTACCTCACAGGCCATGCTGAACCAGCAGGGCTTGTTTGATCAGAATCAAGATCAGGCTCCTATACAGATGGGTTTCTTTTCCTACCCACCAAATAACTTGACCTTCTCTTCGTTGGGATGTCAACAATCCCTCAAAGCCTTGAGTTCCTTACCTTCTTCACTTGGTTCTGATGATCACCATGCACCGTCGACCAATCTCTCTGAAACCCTAATCCCATCTCTCAATATTCCTCTAAAGCATAGAGAAGCTCATATCACTTCTGATTTTGGAGGATCCCAACTCCTTTCTTTGCAAAGATCAAGTGCAAATCTCTGGTCATGGGGGGATCAGGTGAGTGAATGCCTGAGCAGCAAGAGATCATCAGGCGATATTCATGATCATCATCATGTAGGATTAGGTGTTTCAGCAATGAAGATGAAGAAGATAAAGGCGATTAGGAGGAAAGTGAGGGAGCCCAGGTTTTGCTTCAAGACAATGAGCGAAGTTGATGTGCTTGATGATGGTTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCCAGGAGCTATTATCGTTGCACCATGGACAACTGCCGCGTAAAGAAACGTGTAGAGAGATTAGCTGAGGACCCGAGAATGGTGATTACAACATACGAAGGGAGACACGTACATTCTCCATCTCATGATCTCGAAGATTCCCAATCTCCATCTCACCTAAATAACTTCTTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

246

Amino Acids

27.96

Weight (kDa)

9.08

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	170 - 226	8.8e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	200
AccII	CGCG	1 cut(s)	603
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	3 cut(s)	279, 292, 345
AfaI	GTAC	2 cut(s)	533, 675
AfiI	CCNNNNNNNGG	1 cut(s)	643
AflIII	ACRYGT	2 cut(s)	613, 670
AgsI	TTSAA	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	467, 566
AluBI	AGCT	3 cut(s)	260, 573, 629
AluI	AGCT	3 cut(s)	260, 573, 629
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	3 cut(s)	279, 292, 345
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	360
ArsI	GACNNNNNNTTYG	4 cut(s)	103, 135, 311, 343
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	4 cut(s)	179, 355, 658, 710
AvaI	CYCGRG	1 cut(s)	637
AvaII	GGWCC	1 cut(s)	634
BamHI	GGATCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	5 cut(s)	73, 235, 506, 691, 721
BciT130I	CCWGG	2 cut(s)	469, 568
BclI	TGATCA	3 cut(s)	49, 184, 388
BcoDI	GTCTC	1 cut(s)	661
BisI	GCNGC	2 cut(s)	361, 601
BlsI	GCNGC	2 cut(s)	362, 602
Bme1390I	CCNGG	2 cut(s)	469, 568
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	4 cut(s)	69, 286, 465, 636
BmrFI	CCNGG	2 cut(s)	469, 568
BmsI	GCATC	1 cut(s)	571
Bpu10I	CCTNAGC	2 cut(s)	356, 630
BpuEI	CTTGAG	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	673
BsaBI	GATNNNNATC	2 cut(s)	54, 393
BsaJI	CCNNGG	3 cut(s)	467, 566, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	2 cut(s)	54, 393
BseBI	CCWGG	2 cut(s)	469, 568
BseDI	CCNNGG	3 cut(s)	467, 566, 588
BseGI	GGATG	3 cut(s)	5, 134, 562
BseJI	GATNNNNATC	2 cut(s)	54, 393
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	347, 621
BseXI	GCAGC	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	637
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	9 cut(s)	49, 61, 184, 284, 308, 337, 368, 388, 691
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	348, 622
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	2 cut(s)	385, 688
BspLI	GGNNCC	4 cut(s)	69, 286, 465, 636
BspPI	GGATC	3 cut(s)	279, 292, 345
BsrDI	GCAATG	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	467, 566, 588
BssMI	GATC	9 cut(s)	49, 61, 184, 284, 308, 337, 368, 388, 691
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	469, 568
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	673
BstDEI	CTNAG	2 cut(s)	356, 630
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	3 cut(s)	5, 134, 562
BstFNI	CGCG	1 cut(s)	603
BstKTI	GATC	9 cut(s)	52, 64, 187, 287, 311, 340, 371, 391, 694
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	9 cut(s)	49, 61, 184, 284, 308, 337, 368, 388, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 360
BstNI	CCWGG	2 cut(s)	469, 568
BstSCI	CCNGG	2 cut(s)	467, 566
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	5, 134, 562
CciI	TCATGA	2 cut(s)	385, 688
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	532, 674
CviAII	CATG	7 cut(s)	25, 191, 330, 386, 398, 589, 689
CviJI	RGCY	8 cut(s)	23, 42, 68, 149, 260, 466, 573, 629
CviKI_1	RGCY	8 cut(s)	23, 42, 68, 149, 260, 466, 573, 629
CviQI	GTAC	2 cut(s)	532, 674
DdeI	CTNAG	2 cut(s)	356, 630
DpnI	GATC	9 cut(s)	51, 63, 186, 286, 310, 339, 370, 390, 693
DpnII	GATC	9 cut(s)	49, 61, 184, 284, 308, 337, 368, 388, 691
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	467, 566
EcoT14I	CCWWGG	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	7 cut(s)	28, 194, 333, 389, 401, 592, 692
FatI	CATG	7 cut(s)	24, 190, 329, 385, 397, 588, 688
FbaI	TGATCA	3 cut(s)	49, 184, 388
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	361, 601
FokI	GGATG	2 cut(s)	141, 549
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	361, 601
GluI	GCNGC	2 cut(s)	361, 601
HaeIII	GGCC	1 cut(s)	23
Hin1II	CATG	7 cut(s)	28, 194, 333, 389, 401, 592, 692
HincII	GTYRAC	2 cut(s)	134, 201
HindII	GTYRAC	2 cut(s)	134, 201
HinfI	GANTC	2 cut(s)	55, 701
HphI	GGTGA	4 cut(s)	179, 355, 658, 710
Hpy166II	GTNNAC	2 cut(s)	134, 201
Hpy188I	TCNGA	4 cut(s)	54, 181, 214, 274
Hpy188III	TCNNGA	5 cut(s)	59, 386, 481, 689, 695
Hpy8I	GTNNAC	2 cut(s)	134, 201
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	124, 174, 656
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	2 cut(s)	613, 672
HpyCH4V	TGCA	4 cut(s)	194, 304, 317, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 360
HpyF3I	CTNAG	2 cut(s)	356, 630
HpySE526I	ACGT	2 cut(s)	613, 672
Hsp92II	CATG	7 cut(s)	28, 194, 333, 389, 401, 592, 692
Ksp22I	TGATCA	3 cut(s)	49, 184, 388
Kzo9I	GATC	9 cut(s)	49, 61, 184, 284, 308, 337, 368, 388, 691
LmnI	GCTCC	3 cut(s)	73, 463, 570
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	1 cut(s)	571
MaeII	ACGT	2 cut(s)	613, 672
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	9 cut(s)	51, 63, 186, 286, 310, 339, 370, 390, 693
MboI	GATC	9 cut(s)	49, 61, 184, 284, 308, 337, 368, 388, 691
MboII	GAAGA	6 cut(s)	111, 159, 436, 442, 445, 710
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	468
MnlI	CCTC	8 cut(s)	25, 152, 252, 275, 444, 453, 519, 625
MslI	CAYNNNNRTG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	469, 568
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	469, 568
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	2 cut(s)	34, 360
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	9 cut(s)	49, 61, 184, 284, 308, 337, 368, 388, 691
NlaIII	CATG	7 cut(s)	28, 194, 333, 389, 401, 592, 692
NlaIV	GGNNCC	4 cut(s)	69, 286, 465, 636
PagI	TCATGA	2 cut(s)	385, 688
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	55, 701
PkrI	GCNGC	2 cut(s)	362, 602
Ppu21I	YACGTR	1 cut(s)	673
PpuMI	RGGWCCY	1 cut(s)	634
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	467, 566
PspGI	CCWGG	2 cut(s)	467, 566
PspN4I	GGNNCC	4 cut(s)	69, 286, 465, 636
PspPI	GGNCC	1 cut(s)	634
PspPPI	RGGWCCY	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	2 cut(s)	533, 675
RsaNI	GTAC	2 cut(s)	532, 674
RseI	CAYNNNNRTG	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	199
SatI	GCNGC	2 cut(s)	361, 601
Sau3AI	GATC	9 cut(s)	49, 61, 184, 284, 308, 337, 368, 388, 691
Sau96I	GGNCC	1 cut(s)	634
ScrFI	CCNGG	2 cut(s)	469, 568
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	571
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SsiI	CCGC	1 cut(s)	601
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	467, 566
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	2 cut(s)	616, 675
TaqI	TCGA	2 cut(s)	200, 696
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	2 cut(s)	55, 701
TseI	GCWGC	1 cut(s)	360
TspDTI	ATGAA	3 cut(s)	374, 437, 443
TspGWI	ACGGA	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.