Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Forward (+)

35122230 .. 35126035

Gene Structure 3806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG295800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGACATCCACTACCTCACAGGCCATGCTGAACCAGCAGGGCTTGTTTGATCAGAATCAAGATCAGGCTCCTATACAGATGGGTTTCTTTTCCTACCCACCAAATAACTTGACCTTCTCTTCGTTGGGATGTCAACAATCCCTCAAAGCCTTGAGTTCCTTACCTTCTTCACTTGGTTCTGATGATCACCATGCACCGTCGACCAATCTCTCTGAAACCCTAATCCCATCTCTCAATACTCCTCTAAAGCATAGAGAAGCTCATATCACTTCTGATTTTGGAGGATCCCAACTCCTTTCTTTGCAAAGATCAAGTGCAAATCTCTGGTCATGGGGGGATCAGGTGAGTGAATGCCTGAGCAGCAAGAGATCATCAGGCGATATTCATGATCATCATCATGTAGGATTAGGTGTTTCAGCAATGAAGATGAAGAAGATAAAGGCGATTAGGAGGAAAGTGAGGGAGCCCAGGTTTTGCTTCAAGACAATGAGCGAAGTTGATGTGCTTGATGATGGTTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCCAGGTACATAAATTCATATTCCAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

198

Amino Acids

22.18

Weight (kDa)

9.3

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	170 - 191	7e-07	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	200
AclWI	GGATC	3 cut(s)	279, 292, 345
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	2 cut(s)	533, 572
AgsI	TTSAA	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	467, 566
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AlwI	GGATC	3 cut(s)	279, 292, 345
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	360
ApoI	RAATTY	1 cut(s)	577
ArsI	GACNNNNNNTTYG	4 cut(s)	103, 135, 311, 343
AsuHPI	GGTGA	2 cut(s)	179, 355
BamHI	GGATCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	3 cut(s)	73, 235, 506
BciT130I	CCWGG	2 cut(s)	469, 568
BclI	TGATCA	3 cut(s)	49, 184, 388
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	469, 568
BmiI	GGNNCC	3 cut(s)	69, 286, 465
BmrFI	CCNGG	2 cut(s)	469, 568
BmsI	GCATC	1 cut(s)	571
Bpu10I	CCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	172
BsaBI	GATNNNNATC	2 cut(s)	54, 393
BsaJI	CCNNGG	2 cut(s)	467, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	2 cut(s)	54, 393
BseBI	CCWGG	2 cut(s)	469, 568
BseDI	CCNNGG	2 cut(s)	467, 566
BseGI	GGATG	3 cut(s)	5, 134, 562
BseJI	GATNNNNATC	2 cut(s)	54, 393
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	372
BshFI	GGCC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	8 cut(s)	49, 61, 184, 284, 308, 337, 368, 388
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	69, 286, 465
BspPI	GGATC	3 cut(s)	279, 292, 345
BsrDI	GCAATG	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	467, 566
BssMI	GATC	8 cut(s)	49, 61, 184, 284, 308, 337, 368, 388
Bst2UI	CCWGG	2 cut(s)	469, 568
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	3 cut(s)	5, 134, 562
BstKTI	GATC	8 cut(s)	52, 64, 187, 287, 311, 340, 371, 391
BstMBI	GATC	8 cut(s)	49, 61, 184, 284, 308, 337, 368, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 360
BstNI	CCWGG	2 cut(s)	469, 568
BstSCI	CCNGG	2 cut(s)	467, 566
BstV1I	GCAGC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	5, 134, 562
CciI	TCATGA	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	532, 571
CviAII	CATG	5 cut(s)	25, 191, 330, 386, 398
CviJI	RGCY	6 cut(s)	23, 42, 68, 149, 260, 466
CviKI_1	RGCY	6 cut(s)	23, 42, 68, 149, 260, 466
CviQI	GTAC	2 cut(s)	532, 571
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	8 cut(s)	51, 63, 186, 286, 310, 339, 370, 390
DpnII	GATC	8 cut(s)	49, 61, 184, 284, 308, 337, 368, 388
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	467, 566
EcoT38I	GRGCYC	1 cut(s)	468
FaeI	CATG	5 cut(s)	28, 194, 333, 389, 401
FatI	CATG	5 cut(s)	24, 190, 329, 385, 397
FbaI	TGATCA	3 cut(s)	49, 184, 388
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	2 cut(s)	141, 549
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	28, 194, 333, 389, 401
HincII	GTYRAC	2 cut(s)	134, 201
HindII	GTYRAC	2 cut(s)	134, 201
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	2 cut(s)	179, 355
Hpy166II	GTNNAC	2 cut(s)	134, 201
Hpy188I	TCNGA	4 cut(s)	54, 181, 214, 274
Hpy188III	TCNNGA	3 cut(s)	59, 386, 481
Hpy8I	GTNNAC	2 cut(s)	134, 201
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	124, 174
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	194, 304, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 360
HpyF3I	CTNAG	1 cut(s)	356
Hsp92II	CATG	5 cut(s)	28, 194, 333, 389, 401
Ksp22I	TGATCA	3 cut(s)	49, 184, 388
Kzo9I	GATC	8 cut(s)	49, 61, 184, 284, 308, 337, 368, 388
LmnI	GCTCC	2 cut(s)	73, 463
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	1 cut(s)	571
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	8 cut(s)	51, 63, 186, 286, 310, 339, 370, 390
MboI	GATC	8 cut(s)	49, 61, 184, 284, 308, 337, 368, 388
MboII	GAAGA	5 cut(s)	111, 159, 436, 442, 445
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	2 cut(s)	577, 589
MnlI	CCTC	7 cut(s)	25, 152, 252, 275, 444, 453, 519
MslI	CAYNNNNRTG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	469, 568
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	469, 568
MwoI	GCNNNNNNNGC	2 cut(s)	34, 360
NdeII	GATC	8 cut(s)	49, 61, 184, 284, 308, 337, 368, 388
NlaIII	CATG	5 cut(s)	28, 194, 333, 389, 401
NlaIV	GGNNCC	3 cut(s)	69, 286, 465
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	595
Psp6I	CCWGG	2 cut(s)	467, 566
PspGI	CCWGG	2 cut(s)	467, 566
PspN4I	GGNNCC	3 cut(s)	69, 286, 465
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	2 cut(s)	533, 572
RsaNI	GTAC	2 cut(s)	532, 571
RseI	CAYNNNNRTG	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	199
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	8 cut(s)	49, 61, 184, 284, 308, 337, 368, 388
ScrFI	CCNGG	2 cut(s)	469, 568
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	8 cut(s)	17, 116, 166, 262, 345, 412, 473, 572
SfaNI	GCATC	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	577, 589
StyD4I	CCNGG	2 cut(s)	467, 566
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	577, 589
TfiI	GAWTC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	360
TspDTI	ATGAA	4 cut(s)	374, 437, 443, 570
TspGWI	ACGGA	1 cut(s)	549
XapI	RAATTY	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.