Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Forward (+)

20463161 .. 20465007

Gene Structure 1847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCTAAAGCATCAGCTCAAGAAGAAGAAGTGCATGCTTATGGATGGGCTGCTAGAGATTCCTCAGGAATTCTTTCCCCCTACCATTTCACTAGAAGGGCTAACGGGGATAATGATATCACCATCAAGATACAATATTGCGGAATTTGCCATGGAGACATTCACCTCGTAAAGAGCAAAGTATGGTCGACCATTTATCCGACTGTGCCCGGGCATGAAATTGTTGGCCAAGTGACCAAGGTTGGGCTCAACGTCAAAAAATTCAAAGTTGGAGATGTAGCCGGAGTAGGGTGCATGATGGGTTCATGTGGCTCGTGCGAGAACTGCAAACAAGACTTGGAAAATTACTGCCCCAAAATGTTATGGACCTTCAATGGACAATATGAAGATGGAACAAGAGCCTTTGGGGGATATTCAGATAAGTTTGTTGTGGAAGAGCACTTTGCCGTCCGAATCCCAAATGACATTCCACTAGCAGGTGTCGCCCCGCTATTGTGTGCTGGGATTACCGTGTATAGCCCCCTGAAATATTTCGGACTAGTCCCCCAGCCCGGTAGCAAGAAACATTTGGGTGTTGTTGGGCTTGGAGGTGTAGGTCATATGGCCGTGAAGTTTACCAAAGCTTTCGGAGCAAAGGTTACTGTGATTAGTTCCTCTCCGAGTAAGGAAAAGGAAGCAGTGGAACGACTTGGTGCAGATTCATTTTTGATCAGTCATGACCATGAGAAATTGGAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

246

Amino Acids

26.62

Weight (kDa)

7.61

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 153	1e-24	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	197 - 238	1.2e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AccI	GTMKAC	1 cut(s)	188
AciI	CCGC	2 cut(s)	141, 488
AcoI	YGGCCR	2 cut(s)	226, 603
AcsI	RAATTY	3 cut(s)	69, 144, 260
AfiI	CCNNNNNNNGG	4 cut(s)	243, 288, 476, 551
AgsI	TTSAA	2 cut(s)	265, 373
AhlI	ACTAGT	1 cut(s)	538
AluBI	AGCT	2 cut(s)	17, 623
AluI	AGCT	2 cut(s)	17, 623
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	226, 603
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	3 cut(s)	69, 144, 260
Asp700I	GAANNNNTTC	2 cut(s)	73, 530
AspS9I	GGNCC	1 cut(s)	366
AsuC2I	CCSGG	3 cut(s)	210, 211, 552
AsuHPI	GGTGA	2 cut(s)	112, 155
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	366
AxyI	CCTNAGG	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	4 cut(s)	39, 131, 292, 383
BceAI	ACGGC	2 cut(s)	431, 590
BclI	TGATCA	1 cut(s)	708
BcnI	CCSGG	3 cut(s)	210, 211, 552
BcoDI	GTCTC	1 cut(s)	150
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	4 cut(s)	54, 93, 473, 539
BfuAI	ACCTGC	1 cut(s)	467
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	210, 211, 552
Bme18I	GGWCC	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	366
BmrFI	CCNGG	3 cut(s)	210, 211, 552
BmsI	GCATC	1 cut(s)	20
BpuMI	CCSGG	3 cut(s)	210, 211, 552
BsaJI	CCNNGG	3 cut(s)	151, 209, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	4 cut(s)	243, 288, 476, 551
Bse21I	CCTNAGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	151, 209, 237
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	4 cut(s)	243, 288, 476, 551
BseMII	CTCAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	2 cut(s)	500, 546
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	2 cut(s)	228, 605
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	3 cut(s)	210, 282, 552
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	4 cut(s)	243, 288, 476, 551
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	228, 605
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	210, 249, 441
Bsp143I	GATC	2 cut(s)	708, 735
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	2 cut(s)	141, 488
BspANI	GGCC	2 cut(s)	228, 605
BspCNI	CTCAG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	715
BspMI	ACCTGC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	429
BssECI	CCNNGG	3 cut(s)	151, 209, 237
BssMI	GATC	2 cut(s)	708, 735
BssSI	CACGAG	1 cut(s)	313
BssT1I	CCWWGG	2 cut(s)	151, 237
Bst2BI	CACGAG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	205, 511, 643
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	711, 738
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	708, 735
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 324, 482, 629
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	3 cut(s)	208, 209, 550
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	735
Bsu36I	CCTNAGG	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	228, 605
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	50
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	1 cut(s)	684
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	36
CciI	TCATGA	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	366
Cfr9I	CCCGGG	1 cut(s)	209
CviAII	CATG	7 cut(s)	35, 152, 215, 295, 306, 716, 722
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	2 cut(s)	710, 737
DpnII	GATC	2 cut(s)	708, 735
EaeI	YGGCCR	2 cut(s)	226, 603
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	151, 237
Eco24I	GRGCYC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	151, 237
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	151, 237
FaeI	CATG	7 cut(s)	38, 155, 218, 298, 309, 719, 725
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	7 cut(s)	34, 151, 214, 294, 305, 715, 721
FauI	CCCGC	1 cut(s)	495
FauNDI	CATATG	1 cut(s)	600
FbaI	TGATCA	1 cut(s)	708
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	4 cut(s)	54, 93, 473, 539
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	2 cut(s)	504, 550
HaeIII	GGCC	2 cut(s)	228, 605
HapII	CCGG	3 cut(s)	210, 282, 552
Hin1II	CATG	7 cut(s)	38, 155, 218, 298, 309, 719, 725
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	3 cut(s)	59, 453, 698
HpaII	CCGG	3 cut(s)	210, 282, 552
HphI	GGTGA	2 cut(s)	112, 155
Hpy166II	GTNNAC	2 cut(s)	189, 615
Hpy188I	TCNGA	6 cut(s)	201, 418, 452, 536, 629, 660
Hpy188III	TCNNGA	4 cut(s)	20, 66, 127, 716
Hpy8I	GTNNAC	2 cut(s)	189, 615
HpyAV	CCTTC	2 cut(s)	90, 379
HpyCH4III	ACNGT	3 cut(s)	205, 511, 643
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	34, 294, 327, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 324, 482, 629
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	7 cut(s)	38, 155, 218, 298, 309, 719, 725
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	2 cut(s)	708, 735
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	629
LpnPI	CCDG	8 cut(s)	51, 223, 295, 462, 486, 536, 560, 565
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	4 cut(s)	54, 93, 473, 539
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	232, 637
MalI	GATC	2 cut(s)	710, 737
MboI	GATC	2 cut(s)	708, 735
MboII	GAAGA	4 cut(s)	35, 38, 398, 446
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	3 cut(s)	210, 249, 441
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	6 cut(s)	69, 144, 219, 260, 343, 728
MluNI	TGGCCA	1 cut(s)	228
MmeI	TCCRAC	2 cut(s)	224, 250
MnlI	CCTC	4 cut(s)	73, 176, 581, 664
Mox20I	TGGCCA	1 cut(s)	228
MroXI	GAANNNNTTC	2 cut(s)	73, 530
MscI	TGGCCA	1 cut(s)	228
MslI	CAYNNNNRTG	3 cut(s)	39, 570, 720
Msp20I	TGGCCA	1 cut(s)	228
MspI	CCGG	3 cut(s)	210, 282, 552
MspR9I	CCNGG	3 cut(s)	210, 211, 552
MwoI	GCNNNNNNNGC	4 cut(s)	147, 324, 482, 629
NciI	CCSGG	3 cut(s)	210, 211, 552
NcoI	CCATGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	600
NdeII	GATC	2 cut(s)	708, 735
NlaIII	CATG	7 cut(s)	38, 155, 218, 298, 309, 719, 725
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	38
PaeI	GCATGC	1 cut(s)	38
PagI	TCATGA	1 cut(s)	715
PaqCI	CACCTGC	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	429
PdmI	GAANNNNTTC	2 cut(s)	73, 530
PfeI	GAWTC	3 cut(s)	59, 453, 698
PkrI	GCNGC	1 cut(s)	52
PspFI	CCCAGC	2 cut(s)	500, 546
PspPI	GGNCC	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	735
RseI	CAYNNNNRTG	3 cut(s)	39, 570, 720
SalI	GTCGAC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	429
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	708, 735
Sau96I	GGNCC	1 cut(s)	366
ScrFI	CCNGG	3 cut(s)	210, 211, 552
SduI	GDGCHC	3 cut(s)	210, 249, 441
SfaNI	GCATC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	366
SmaI	CCCGGG	1 cut(s)	211
SmiMI	CAYNNNNRTG	3 cut(s)	39, 570, 720
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	538
SphI	GCATGC	1 cut(s)	38
SrfI	GCCCGGGC	1 cut(s)	211
Sse9I	AATT	6 cut(s)	69, 144, 219, 260, 343, 728
SsiI	CCGC	2 cut(s)	141, 488
SspI	AATATT	2 cut(s)	137, 530
SspMI	CTAG	4 cut(s)	54, 93, 473, 539
StyD4I	CCNGG	3 cut(s)	208, 209, 550
StyI	CCWWGG	2 cut(s)	151, 237
TaaI	ACNGT	3 cut(s)	205, 511, 643
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	188
TasI	AATT	6 cut(s)	69, 144, 219, 260, 343, 728
TfiI	GAWTC	3 cut(s)	59, 453, 698
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	4 cut(s)	231, 294, 399, 690
TspMI	CCCGGG	1 cut(s)	209
TspRI	CASTG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	3 cut(s)	69, 144, 260
XceI	RCATGY	1 cut(s)	38
XmaI	CCCGGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	2 cut(s)	73, 530
XspI	CTAG	4 cut(s)	54, 93, 473, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.