Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Reverse (-)

17235761 .. 17239886

Gene Structure 4126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G168200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCATCTACGACGTCCCAGGCCATGCTCAACCAGCAGCAGGGCTTGTTTGAGAATGAAGAGGGTTCTAATGCACAGATGGGTTTCTTTTCAATCCCACCAAACTTGAACTTTTCTTCATTGGGATCTCTCAAAGCCTTCGGTTCTTCTAGCATACCTTCAAGCACCAATCTCTCTGAAACCCTACTCCCATCACTCACTCCTCTAAAGCATAGAGAAGATCATAGCATCACTACTAGTTCTGATTTTGGAGGATCCCAACTCCTTTCCTTGCAAAGATCCACTGCAAATCTCTGGGCATGGGGAGAGGTGAGCGATGATCATGAGTGCCTAAGCAGCAAGAGATCAAACGGTGGAGATGATCGCCATCATCACCATATGGGAGTTTCAGCAATGAAGATGAAGAAGATGAAGGCAATTAGGAGGAAGGTGAGGGAGCCTAGGTTTTGCTTCAAAACCATGAGTGAGGTTGATGTGCTTGATGATGGATACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCCAGGAGCTATTATCGTTGCACCATGGACAACTGCCGGGTAAAGAAAAGAGTGGAGCGATTAGCCGAGGACCCGAGGATGGTGATCACAACCTACGAAGGCCGGCACGTGCATTCTCCGTCGCACGATCTTGATCAAGATTCACAGCAAGCTTCATCTCACCTAAATAACTTCTTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

240

Amino Acids

27.2

Weight (kDa)

9.03

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AclWI	GGATC	4 cut(s)	133, 249, 262, 273
AcvI	CACGTG	1 cut(s)	646
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	2 cut(s)	40, 616
AgsI	TTSAA	4 cut(s)	93, 109, 162, 454
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	18, 539
AluBI	AGCT	2 cut(s)	546, 689
AluI	AGCT	2 cut(s)	546, 689
AlwI	GGATC	4 cut(s)	133, 249, 262, 273
Ama87I	CYCGRG	1 cut(s)	610
AoxI	GGCC	2 cut(s)	21, 637
ApeKI	GCWGC	2 cut(s)	37, 336
AspA2I	CCTAGG	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	607
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	5 cut(s)	322, 365, 442, 631, 689
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	607
AvrII	CCTAGG	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	646
BbvI	GCAGC	2 cut(s)	49, 348
BccI	CCATC	5 cut(s)	73, 199, 375, 479, 610
BciT130I	CCWGG	2 cut(s)	20, 541
BciVI	GTATCC	1 cut(s)	482
BclI	TGATCA	3 cut(s)	319, 621, 670
BcnI	CCSGG	1 cut(s)	575
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	3 cut(s)	150, 237, 441
BfuI	GTATCC	1 cut(s)	482
BisI	GCNGC	2 cut(s)	38, 337
BlnI	CCTAGG	1 cut(s)	440
BlsI	GCNGC	2 cut(s)	39, 338
Bme1390I	CCNGG	3 cut(s)	20, 541, 575
Bme18I	GGWCC	1 cut(s)	607
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	3 cut(s)	256, 438, 609
BmrFI	CCNGG	3 cut(s)	20, 541, 575
BmsI	GCATC	3 cut(s)	14, 237, 544
Bpu10I	CCTNAGC	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	575
BsaAI	YACGTR	1 cut(s)	646
BsaBI	GATNNNNATC	3 cut(s)	366, 620, 669
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	6 cut(s)	18, 440, 539, 561, 603, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 616
Bse118I	RCCGGY	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	3 cut(s)	366, 620, 669
BseBI	CCWGG	2 cut(s)	20, 541
BseDI	CCNNGG	6 cut(s)	18, 440, 539, 561, 603, 611
BseGI	GGATG	2 cut(s)	535, 621
BseJI	GATNNNNATC	3 cut(s)	366, 620, 669
BseLI	CCNNNNNNNGG	2 cut(s)	40, 616
BseMI	GCAATG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	49, 348
BshFI	GGCC	2 cut(s)	23, 639
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	574, 640
BslI	CCNNNNNNNGG	2 cut(s)	40, 616
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	23, 639
BsoBI	CYCGRG	1 cut(s)	610
Bsp19I	CCATGG	1 cut(s)	561
BspANI	GGCC	2 cut(s)	23, 639
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	256, 438, 609
BspPI	GGATC	4 cut(s)	133, 249, 262, 273
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	639
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	6 cut(s)	18, 440, 539, 561, 603, 611
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	440, 561
Bst2UI	CCWGG	2 cut(s)	20, 541
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	2 cut(s)	641, 687
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	535, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 336
BstNI	CCWGG	2 cut(s)	20, 541
BstSCI	CCNGG	3 cut(s)	18, 539, 573
BstV1I	GCAGC	2 cut(s)	49, 348
BstX2I	RGATCY	3 cut(s)	125, 254, 278
BstYI	RGATCY	3 cut(s)	125, 254, 278
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	23, 639
BtgI	CCRYGG	1 cut(s)	561
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	535, 621
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	641, 687
CciI	TCATGA	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	505
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	5 cut(s)	25, 300, 323, 460, 562
CviJI	RGCY	8 cut(s)	23, 45, 137, 439, 546, 602, 639, 689
CviKI_1	RGCY	8 cut(s)	23, 45, 137, 439, 546, 602, 639, 689
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	440, 561
Eco47I	GGWCC	1 cut(s)	607
Eco72I	CACGTG	1 cut(s)	646
Eco88I	CYCGRG	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	18, 539
EcoT14I	CCWWGG	2 cut(s)	440, 561
ErhI	CCWWGG	2 cut(s)	440, 561
FaeI	CATG	5 cut(s)	28, 303, 326, 463, 565
FatI	CATG	5 cut(s)	24, 299, 322, 459, 561
FauNDI	CATATG	1 cut(s)	378
FbaI	TGATCA	3 cut(s)	319, 621, 670
Fnu4HI	GCNGC	2 cut(s)	38, 337
FokI	GGATG	2 cut(s)	522, 628
Fsp4HI	GCNGC	2 cut(s)	38, 337
FspBI	CTAG	3 cut(s)	150, 237, 441
GluI	GCNGC	2 cut(s)	38, 337
HaeIII	GGCC	2 cut(s)	23, 639
HapII	CCGG	2 cut(s)	574, 640
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	28, 303, 326, 463, 565
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	1 cut(s)	677
HpaII	CCGG	2 cut(s)	574, 640
HphI	GGTGA	5 cut(s)	322, 365, 442, 631, 689
Hpy188I	TCNGA	2 cut(s)	178, 244
Hpy188III	TCNNGA	3 cut(s)	323, 668, 674
Hpy99I	CGWCG	2 cut(s)	16, 661
HpyAV	CCTTC	5 cut(s)	148, 168, 406, 421, 629
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	2 cut(s)	14, 645
HpyCH4V	TGCA	5 cut(s)	74, 274, 287, 558, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 336
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	2 cut(s)	14, 645
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	28, 303, 326, 463, 565
KroI	GCCGGC	1 cut(s)	639
KroNI	GCCGGC	1 cut(s)	641
Ksp22I	TGATCA	3 cut(s)	319, 621, 670
LmnI	GCTCC	3 cut(s)	436, 543, 592
Lsp1109I	GCAGC	2 cut(s)	49, 348
LweI	GCATC	3 cut(s)	14, 237, 544
MaeI	CTAG	3 cut(s)	150, 237, 441
MaeII	ACGT	2 cut(s)	14, 645
MboII	GAAGA	8 cut(s)	71, 108, 138, 230, 409, 415, 418, 703
MflI	RGATCY	3 cut(s)	125, 254, 278
MluCI	AATT	1 cut(s)	417
MroNI	GCCGGC	1 cut(s)	639
MspI	CCGG	2 cut(s)	574, 640
MspR9I	CCNGG	3 cut(s)	20, 541, 575
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	2 cut(s)	20, 541
MwoI	GCNNNNNNNGC	2 cut(s)	34, 336
NaeI	GCCGGC	1 cut(s)	641
NciI	CCSGG	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	378
NgoMIV	GCCGGC	1 cut(s)	639
NlaIII	CATG	5 cut(s)	28, 303, 326, 463, 565
NlaIV	GGNNCC	3 cut(s)	256, 438, 609
NmeAIII	GCCGAG	1 cut(s)	628
PagI	TCATGA	1 cut(s)	322
PctI	GAATGC	1 cut(s)	649
PdiI	GCCGGC	1 cut(s)	641
PfeI	GAWTC	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	39, 338
PmaCI	CACGTG	1 cut(s)	646
PmlI	CACGTG	1 cut(s)	646
Ppu21I	YACGTR	1 cut(s)	646
PpuMI	RGGWCCY	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	18, 539
PspCI	CACGTG	1 cut(s)	646
PspGI	CCWGG	2 cut(s)	18, 539
PspN4I	GGNNCC	3 cut(s)	256, 438, 609
PspPI	GGNCC	1 cut(s)	607
PspPPI	RGGWCCY	1 cut(s)	607
PsuI	RGATCY	3 cut(s)	125, 254, 278
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SatI	GCNGC	2 cut(s)	38, 337
Sau96I	GGNCC	1 cut(s)	607
ScrFI	CCNGG	3 cut(s)	20, 541, 575
SfaNI	GCATC	3 cut(s)	14, 237, 544
SinI	GGWCC	1 cut(s)	607
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	1 cut(s)	417
SspMI	CTAG	3 cut(s)	150, 237, 441
StyD4I	CCNGG	3 cut(s)	18, 539, 573
StyI	CCWWGG	2 cut(s)	440, 561
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	2 cut(s)	17, 648
TasI	AATT	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	677
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	2 cut(s)	37, 336
TspDTI	ATGAA	6 cut(s)	72, 108, 410, 416, 425, 681
TspGWI	ACGGA	2 cut(s)	522, 645
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	607
XmaJI	CCTAGG	1 cut(s)	440
XspI	CTAG	3 cut(s)	150, 237, 441
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.