Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008094

Physical Location & Seq

Genomic Coordinates Reverse (-)

37891029 .. 37895909

Gene Structure 4881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1337100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCATCTAGAACGTCCCACGCAGCCATTCTCAACCACCACCACCACCAGCAGCCGCTGGGTTTGTTTGAGAATCAAGAGGGAGAGGGCTGTAATACACAGACGGATTTCTTTCCTTTCCCACAAAACTTGACCTTTTCATCGTTGCCCTTGGTAGGTCACCAATCTCTCAAAGGCGGCTTGAGCACGGCTAGCATAGCTTCTGATGATGCACCTTCAACTACCACTCTCTCTGAAACCCTAGTCCCCCGGCCATCACTTACTCCTCCTCTGAGGCATAAACAAGATCATAACATCACTACTAGTTCTGAATTTGGCGGAGGAGGAGGAGGAGGAGGAGGAGGACCCCATGGCCATCTCCTTTCTCTGCAAAGATCCACCGCAAATCTCTGGGCATGGGGAGACGTGAGTGATGAGTACTGCCTGAGCAGCAAGAGATCAAGCGGCGGAGACGACAGCCATCATCCTTATTTAGGAGGGCTTTCGGCAATGAAGATGAAGAAGATGAAGGCAATTAGGAGGAAGGTAAGGGAGCCTAGGTTTTGCTTCAAAACCCTGAGCGATGTCGATGTGCTTGATGATGGTTACAAGTGGAGAAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCAAGGAGTTATTATCGTTGTACGATGGATAACTGCCGCGTAAAGAAACGAGTAGAGCGATTAGCCGAGGACCCGAGGATGGTGATCACAACGTATGAAGGGAGACACGTACATTCTCCATCTCATGATCTTGATGATCAAGATTCACGATCTCCGTCGCACCTGAACAACTTCTTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043455 GO:0043565 GO:0044212 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901141 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904368 GO:1904369 GO:1990837 GO:2000112 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

272

Amino Acids

30.24

Weight (kDa)

8.93

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	193 - 249	1e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39410
fragaria_vesca	FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082 FvH4_1g23082
malus_domestica	MD01G1013500.v1.1 MD15G1337100.v1.1
prunus_persica	Prupe.6G168200_v2.0.a1
pyrus_communis	pycom01g04550 pycom15g28900
rosa_chinensis	RchiOBHm_Chr2g0117781
rosa_laevigata	RLG00000018373
rosa_multiflora	Rmu_sc0005241.1_g000008
rosa_roxburghii	Rroxscaffold_2G00126220
rosa_rugosa	Rorug02G0214100
rosa_samantha	Rh2AG270100 Rh2BG281600 Rh2CG269900 Rh2DG278000 Rh2DG295800
rosa_wichuraiana	Rw2G021340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	672
AciI	CCGC	7 cut(s)	56, 177, 318, 381, 444, 447, 670
AclWI	GGATC	1 cut(s)	369
AcoI	YGGCCR	2 cut(s)	251, 352
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	4 cut(s)	419, 602, 655, 744
AfiI	CCNNNNNNNGG	3 cut(s)	155, 473, 712
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	2 cut(s)	219, 550
AhlI	ACTAGT	1 cut(s)	302
AjiI	CACGTC	1 cut(s)	406
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	3 cut(s)	396, 444, 730
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	706
AoxI	GGCC	2 cut(s)	251, 352
ApeKI	GCWGC	3 cut(s)	23, 52, 429
ApoI	RAATTY	1 cut(s)	311
Asp700I	GAANNNNTTC	1 cut(s)	803
AspA2I	CCTAGG	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	344, 703
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	152, 727
AsuNHI	GCTAGC	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	706
AvaII	GGWCC	2 cut(s)	344, 703
AvrII	CCTAGG	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	35, 64, 441
BccI	CCATC	7 cut(s)	262, 363, 468, 575, 652, 706, 760
BceAI	ACGGC	1 cut(s)	204
BclI	TGATCA	2 cut(s)	717, 769
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	3 cut(s)	396, 444, 730
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	5 cut(s)	9, 192, 242, 303, 537
BisI	GCNGC	7 cut(s)	24, 53, 56, 178, 430, 445, 670
BlnI	CCTAGG	1 cut(s)	536
BlsI	GCNGC	7 cut(s)	25, 54, 57, 179, 431, 446, 671
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	2 cut(s)	344, 703
BmeT110I	CYCGRG	1 cut(s)	706
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	344, 703
BmiI	GGNNCC	3 cut(s)	346, 534, 705
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	3 cut(s)	14, 199, 640
BmtI	GCTAGC	1 cut(s)	195
Bpu10I	CCTNAGC	2 cut(s)	425, 557
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	742
BsaBI	GATNNNNATC	1 cut(s)	716
BsaJI	CCNNGG	7 cut(s)	150, 248, 349, 536, 635, 699, 707
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 473, 712
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	716
BseDI	CCNNGG	7 cut(s)	150, 248, 349, 536, 635, 699, 707
BseGI	GGATG	3 cut(s)	463, 631, 717
BseJI	GATNNNNATC	1 cut(s)	716
BseLI	CCNNNNNNNGG	3 cut(s)	155, 473, 712
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	3 cut(s)	263, 416, 548
BseRI	GAGGAG	9 cut(s)	255, 258, 336, 339, 342, 345, 348, 351, 354
BseXI	GCAGC	3 cut(s)	35, 64, 441
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	2 cut(s)	253, 354
BsiHKAI	GWGCWC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	155, 473, 712
BsmAI	GTCTC	3 cut(s)	396, 444, 730
BsmBI	CGTCTC	2 cut(s)	396, 444
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	253, 354
BsoBI	CYCGRG	1 cut(s)	706
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	7 cut(s)	286, 374, 437, 717, 760, 769, 782
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	7 cut(s)	56, 177, 318, 381, 444, 447, 670
BspANI	GGCC	2 cut(s)	253, 354
BspCNI	CTCAG	3 cut(s)	264, 417, 549
BspFNI	CGCG	1 cut(s)	672
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	3 cut(s)	346, 534, 705
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	495
BssECI	CCNNGG	7 cut(s)	150, 248, 349, 536, 635, 699, 707
BssMI	GATC	7 cut(s)	286, 374, 437, 717, 760, 769, 782
BssT1I	CCWWGG	4 cut(s)	150, 349, 536, 635
BstBAI	YACGTR	1 cut(s)	742
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	272, 425, 557
BstDSI	CCRYGG	1 cut(s)	349
BstEII	GGTNACC	1 cut(s)	158
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstF5I	GGATG	3 cut(s)	463, 631, 717
BstFNI	CGCG	1 cut(s)	672
BstKTI	GATC	7 cut(s)	289, 377, 440, 720, 763, 772, 785
BstMAI	GTCTC	3 cut(s)	396, 444, 730
BstMBI	GATC	7 cut(s)	286, 374, 437, 717, 760, 769, 782
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 192, 197, 429
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	35, 64, 441
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	253, 354
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	576
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	463, 631, 717
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	757
Cfr13I	GGNCC	2 cut(s)	344, 703
Csp6I	GTAC	4 cut(s)	418, 601, 654, 743
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	3 cut(s)	350, 396, 758
CviQI	GTAC	4 cut(s)	418, 601, 654, 743
DdeI	CTNAG	3 cut(s)	272, 425, 557
DpnI	GATC	7 cut(s)	288, 376, 439, 719, 762, 771, 784
DpnII	GATC	7 cut(s)	286, 374, 437, 717, 760, 769, 782
EaeI	YGGCCR	2 cut(s)	251, 352
EciI	GGCGGA	2 cut(s)	333, 462
Eco130I	CCWWGG	4 cut(s)	150, 349, 536, 635
Eco47I	GGWCC	2 cut(s)	344, 703
Eco88I	CYCGRG	1 cut(s)	706
Eco91I	GGTNACC	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoO109I	RGGNCCY	2 cut(s)	344, 703
EcoO65I	GGTNACC	1 cut(s)	158
EcoT14I	CCWWGG	4 cut(s)	150, 349, 536, 635
ErhI	CCWWGG	4 cut(s)	150, 349, 536, 635
Esp3I	CGTCTC	2 cut(s)	396, 444
FaeI	CATG	3 cut(s)	353, 399, 761
FaiI	YATR	7 cut(s)	197, 279, 291, 351, 397, 729, 759
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	349, 395, 757
FbaI	TGATCA	2 cut(s)	717, 769
Fnu4HI	GCNGC	7 cut(s)	24, 53, 56, 178, 430, 445, 670
FokI	GGATG	3 cut(s)	450, 618, 724
Fsp4HI	GCNGC	7 cut(s)	24, 53, 56, 178, 430, 445, 670
FspBI	CTAG	5 cut(s)	9, 192, 242, 303, 537
GluI	GCNGC	7 cut(s)	24, 53, 56, 178, 430, 445, 670
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	253, 354
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	3 cut(s)	353, 399, 761
HinfI	GANTC	2 cut(s)	73, 776
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	152, 727
Hpy188I	TCNGA	4 cut(s)	205, 235, 273, 310
Hpy188III	TCNNGA	6 cut(s)	9, 77, 758, 764, 773, 780
Hpy99I	CGWCG	1 cut(s)	793
HpyAV	CCTTC	4 cut(s)	225, 502, 517, 725
HpyCH4IV	ACGT	4 cut(s)	14, 405, 725, 741
HpyCH4V	TGCA	2 cut(s)	212, 370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 192, 197, 429
HpyF3I	CTNAG	3 cut(s)	272, 425, 557
HpySE526I	ACGT	4 cut(s)	14, 405, 725, 741
Hsp92II	CATG	3 cut(s)	353, 399, 761
Ksp22I	TGATCA	2 cut(s)	717, 769
Kzo9I	GATC	7 cut(s)	286, 374, 437, 717, 760, 769, 782
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	8 cut(s)	44, 62, 263, 376, 437, 569, 796, 809
Lsp1109I	GCAGC	3 cut(s)	35, 64, 441
LweI	GCATC	3 cut(s)	14, 199, 640
MaeI	CTAG	5 cut(s)	9, 192, 242, 303, 537
MaeII	ACGT	4 cut(s)	14, 405, 725, 741
MaeIII	GTNAC	2 cut(s)	158, 584
MalI	GATC	7 cut(s)	288, 376, 439, 719, 762, 771, 784
MboI	GATC	7 cut(s)	286, 374, 437, 717, 760, 769, 782
MboII	GAAGA	4 cut(s)	505, 511, 514, 799
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	188
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	2 cut(s)	311, 513
MluNI	TGGCCA	1 cut(s)	354
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	803
MscI	TGGCCA	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	4 cut(s)	183, 192, 197, 429
NciI	CCSGG	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	7 cut(s)	286, 374, 437, 717, 760, 769, 782
NheI	GCTAGC	1 cut(s)	191
NlaIII	CATG	3 cut(s)	353, 399, 761
NlaIV	GGNNCC	3 cut(s)	346, 534, 705
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	158
PagI	TCATGA	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	803
PfeI	GAWTC	2 cut(s)	73, 776
PkrI	GCNGC	7 cut(s)	25, 54, 57, 179, 431, 446, 671
Ppu21I	YACGTR	1 cut(s)	742
PpuMI	RGGWCCY	2 cut(s)	344, 703
Psp5II	RGGWCCY	2 cut(s)	344, 703
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	346, 534, 705
PspPI	GGNCC	2 cut(s)	344, 703
PspPPI	RGGWCCY	2 cut(s)	344, 703
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	4 cut(s)	419, 602, 655, 744
RsaNI	GTAC	4 cut(s)	418, 601, 654, 743
SatI	GCNGC	7 cut(s)	24, 53, 56, 178, 430, 445, 670
Sau3AI	GATC	7 cut(s)	286, 374, 437, 717, 760, 769, 782
Sau96I	GGNCC	2 cut(s)	344, 703
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	188
SfaNI	GCATC	3 cut(s)	14, 199, 640
SinI	GGWCC	2 cut(s)	344, 703
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	2 cut(s)	311, 513
SsiI	CCGC	7 cut(s)	56, 177, 318, 381, 444, 447, 670
SspMI	CTAG	5 cut(s)	9, 192, 242, 303, 537
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	4 cut(s)	150, 349, 536, 635
TaiI	ACGT	4 cut(s)	17, 408, 728, 744
TaqI	TCGA	1 cut(s)	567
TasI	AATT	2 cut(s)	311, 513
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	4 cut(s)	58, 180, 447, 672
TfiI	GAWTC	2 cut(s)	73, 776
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	23, 52, 429
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	5 cut(s)	129, 506, 512, 521, 744
TspGWI	ACGGA	3 cut(s)	119, 618, 777
VpaK11BI	GGWCC	2 cut(s)	344, 703
XagI	CCTNNNNNAGG	1 cut(s)	471
XapI	RAATTY	1 cut(s)	311
XbaI	TCTAGA	1 cut(s)	8
XmaJI	CCTAGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	803
XspI	CTAG	5 cut(s)	9, 192, 242, 303, 537
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.