AT4G39470

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012220
Physical Location & Seq
Reverse (-)
18359198 .. 18361182
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39470.1

Sequence Viewer

Length: 1026 bp
ATGTGTTCAATCGGAGTAACTGCTCTCTGTTCTCCGGCTAAATTTCATCATCGCCGGGAACAATCACTGATTTTTACTCCGACCCATTTGCGTAATCCAAATGGGTTCCAATTTCGGTGGAGAAAGTCCCGACCTTTCGCTCCCAGACTCGCCCAACCCGACAATTTCGCTCCGCCGCTCCCTCTCATACGCTCTTCGACGTCTCTTCTTTCTTCCAAGGATTTCGTTCAGATGCTGGCGAGAAAAGCCGCCATTTTACTTGTTGGGTCGTTTGTCTTTCTAGGGTTCTGCTCTTCGAAACCTGCTTTAGCGCTACCCACTGCAACTGTAGTCTCCCAGGCAGAGTTAGAGGACGAGAAAATGTTCGAGAAGCTTCTGGAAAATGAGCCAGAGAACATGGAGGCTATGAAGGCTGTTGTGTATAAGAAGATGAGGAGAGGGAAAAATGAAGATGCTGTGAAATATGTTGAGAAGCTGATGAAATTAGAGCCTCATGAAGTTGAGTGGAAGCTTTTAGAAGCGCTTTGCTATGAAACAATGGGGGAATTGAGCAAAGCCAAGAGATTGTATAAGGATATTCTCAAAGAACAACCTCTTTTGATCAGAGCTTTGCACGGTCTTGCTATGGTAATGCATAAGACTCATGACACCTCTGTCTTTGATATGCTCATTGAAGCTATGGAAGTTGCTCGACAAGGAAACCGAGTAACCGAGGAGAGAAACATACAAGTCTTGATTGGTCAAATGCATATTGTGGAGGGTCAATTTGAAGAAGGTCTAAAGATATTTCAACAGATGGTGAATGATAATCCTCGAGATTTTCGACCTTACCTTTGCCAGGGCATAGTGTATAGCTTAATGGATAAAAAAGAGGAAGCAGCACAACAGTTTGAGATCTATTGGAGTCTTGTACCTGGAGAATTCCCACAAAAGGGATTTCTCGACGATGTTGCCTTGGCTGCTCAAGCAAAATCCCGAGAACGGCTTCAAAACACATTCAAAGCTAAATTTACTCAGGGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

341

Amino Acids

39.16

Weight (kDa)

8.93

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 145 - 199 7.6e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39470
fragaria_vesca FvH4_1g22920 FvH4_1g22920
malus_domestica MD15G1331000.v1.1
prunus_persica Prupe.6G169000_v2.0.a1 Prupe.6G169000_v2.0.a1
pyrus_communis pycom15g29420 pycom15g29430
rosa_chinensis RchiOBHm_Chr2g0117361
rosa_laevigata RLG00000018345
rosa_multiflora Rmu_sc0004436.1_g000002
rosa_roxburghii Rroxscaffold_2G00126540
rosa_rugosa Rorug02G0212400 Rorug02G0212400
rosa_samantha Rh2AG267500 Rh2BG279900 Rh2DG274600 Rh2DG293900
rosa_wichuraiana Rw2G021180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
AatII GACGTC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 178
AciI CCGC 3 cut(s) 173, 176, 249
AcsI RAATTY 3 cut(s) 41, 920, 1007
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 912
AfeI AGCGCT 2 cut(s) 312, 522
AfiI CCNNNNNNNGG 4 cut(s) 838, 931, 932, 981
AgsI TTSAA 6 cut(s) 9, 674, 770, 791, 989, 1000
AjnI CCWGG 3 cut(s) 336, 837, 913
AluBI AGCT 7 cut(s) 373, 475, 511, 608, 677, 855, 1004
AluI AGCT 7 cut(s) 373, 475, 511, 608, 677, 855, 1004
Alw26I GTCTC 2 cut(s) 207, 337
AlwNI CAGNNNCTG 1 cut(s) 235
Ama87I CYCGRG 2 cut(s) 813, 975
Aor51HI AGCGCT 2 cut(s) 312, 522
ApeKI GCWGC 2 cut(s) 878, 959
ApoI RAATTY 3 cut(s) 41, 920, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 816, 848
Asp700I GAANNNNTTC 2 cut(s) 362, 984
AspLEI GCGC 2 cut(s) 313, 523
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 811
AsuII TTCGAA 1 cut(s) 296
AvaI CYCGRG 2 cut(s) 813, 975
BbvI GCAGC 2 cut(s) 890, 946
BccI CCATC 1 cut(s) 790
BceAI ACGGC 1 cut(s) 998
BcgI CGANNNNNNTGC 4 cut(s) 70, 104, 932, 966
BciT130I CCWGG 3 cut(s) 338, 839, 915
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 207, 337
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 327
BfoI RGCGCY 2 cut(s) 314, 524
BfuAI ACCTGC 1 cut(s) 310
BglII AGATCT 1 cut(s) 894
BisI GCNGC 4 cut(s) 176, 249, 879, 960
BlsI GCNGC 4 cut(s) 177, 250, 880, 961
Bme1390I CCNGG 4 cut(s) 56, 338, 839, 915
BmeT110I CYCGRG 2 cut(s) 813, 975
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 4 cut(s) 56, 338, 839, 915
BmsI GCATC 2 cut(s) 222, 442
BpmI CTGGAG 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 948
BpuMI CCSGG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 5 cut(s) 216, 336, 711, 838, 954
Bsc4I CCNNNNNNNGG 4 cut(s) 838, 931, 932, 981
BseBI CCWGG 3 cut(s) 338, 839, 915
BseDI CCNNGG 5 cut(s) 216, 336, 711, 838, 954
BseLI CCNNNNNNNGG 4 cut(s) 838, 931, 932, 981
BseRI GAGGAG 2 cut(s) 448, 728
BseXI GCAGC 2 cut(s) 890, 946
BsiHKCI CYCGRG 2 cut(s) 813, 975
BsiSI CCGG 2 cut(s) 35, 55
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 4 cut(s) 838, 931, 932, 981
BsmAI GTCTC 2 cut(s) 207, 337
BsmBI CGTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 112
BsoBI CYCGRG 2 cut(s) 813, 975
Bsp119I TTCGAA 1 cut(s) 296
Bsp143I GATC 2 cut(s) 600, 894
BspACI CCGC 3 cut(s) 173, 176, 249
BspHI TCATGA 2 cut(s) 493, 643
BspLI GGNNCC 1 cut(s) 107
BspMI ACCTGC 1 cut(s) 310
BspQI GCTCTTC 2 cut(s) 199, 298
BspT104I TTCGAA 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 178
BssECI CCNNGG 5 cut(s) 216, 336, 711, 838, 954
BssMI GATC 2 cut(s) 600, 894
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 2 cut(s) 216, 954
Bst2UI CCWGG 3 cut(s) 338, 839, 915
Bst4CI ACNGT 3 cut(s) 328, 617, 888
Bst6I CTCTTC 3 cut(s) 199, 210, 298
BstACI GRCGYC 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 1014
BstENI CCTNNNNNAGG 1 cut(s) 836
BstH2I RGCGCY 2 cut(s) 314, 524
BstHHI GCGC 2 cut(s) 313, 523
BstKTI GATC 2 cut(s) 603, 897
BstMAI GTCTC 2 cut(s) 207, 337
BstMBI GATC 2 cut(s) 600, 894
BstMWI GCNNNNNNNGC 4 cut(s) 245, 410, 959, 965
BstNI CCWGG 3 cut(s) 338, 839, 915
BstSCI CCNGG 4 cut(s) 54, 336, 837, 913
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 890, 946
BstX2I RGATCY 1 cut(s) 894
BstYI RGATCY 1 cut(s) 894
BtgZI GCGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 65, 318
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 235
CciI TCATGA 2 cut(s) 493, 643
CfoI GCGC 2 cut(s) 313, 523
Csp6I GTAC 1 cut(s) 911
CspCI CAANNNNNGTGG 2 cut(s) 98, 133
CviAII CATG 3 cut(s) 397, 494, 644
CviQI GTAC 1 cut(s) 911
DdeI CTNAG 1 cut(s) 1014
DpnI GATC 2 cut(s) 602, 896
DpnII GATC 2 cut(s) 600, 894
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 3 cut(s) 199, 210, 298
EarI CTCTTC 3 cut(s) 199, 210, 298
EciI GGCGGA 1 cut(s) 162
Eco130I CCWWGG 2 cut(s) 216, 954
Eco47III AGCGCT 2 cut(s) 312, 522
Eco88I CYCGRG 2 cut(s) 813, 975
EcoNI CCTNNNNNAGG 1 cut(s) 836
EcoRI GAATTC 1 cut(s) 920
EcoRII CCWGG 3 cut(s) 336, 837, 913
EcoT14I CCWWGG 2 cut(s) 216, 954
EcoT22I ATGCAT 2 cut(s) 636, 750
ErhI CCWWGG 2 cut(s) 216, 954
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 3 cut(s) 400, 497, 647
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 396, 493, 643
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 4 cut(s) 176, 249, 879, 960
Fsp4HI GCNGC 4 cut(s) 176, 249, 879, 960
FspBI CTAG 1 cut(s) 281
GlaI GCGC 2 cut(s) 312, 522
GluI GCNGC 4 cut(s) 176, 249, 879, 960
GsuI CTGGAG 1 cut(s) 936
HaeII RGCGCY 2 cut(s) 314, 524
HapII CCGG 2 cut(s) 35, 55
HhaI GCGC 2 cut(s) 313, 523
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 3 cut(s) 400, 497, 647
Hin6I GCGC 2 cut(s) 311, 521
HinP1I GCGC 2 cut(s) 311, 521
HindIII AAGCTT 2 cut(s) 371, 509
HinfI GANTC 3 cut(s) 147, 640, 904
HpaII CCGG 2 cut(s) 35, 55
HphI GGTGA 1 cut(s) 811
Hpy188I TCNGA 4 cut(s) 14, 81, 231, 605
Hpy188III TCNNGA 9 cut(s) 129, 367, 377, 494, 644, 733, 815, 941, 975
Hpy99I CGWCG 2 cut(s) 202, 947
HpyAV CCTTC 2 cut(s) 403, 767
HpyCH4III ACNGT 3 cut(s) 328, 617, 888
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 4 cut(s) 323, 613, 634, 748
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 410, 959, 965
HpyF3I CTNAG 1 cut(s) 1014
HpySE526I ACGT 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 3 cut(s) 400, 497, 647
HspAI GCGC 2 cut(s) 311, 521
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 2 cut(s) 600, 894
LguI GCTCTTC 2 cut(s) 199, 298
LmnI GCTCC 3 cut(s) 145, 175, 183
Lsp1109I GCAGC 2 cut(s) 890, 946
LweI GCATC 2 cut(s) 222, 442
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 16, 706
MalI GATC 2 cut(s) 602, 896
MbiI CCGCTC 1 cut(s) 178
MboI GATC 2 cut(s) 600, 894
MboII GAAGA 7 cut(s) 186, 197, 204, 285, 439, 461, 782
MflI RGATCY 1 cut(s) 894
MluCI AATT 8 cut(s) 41, 110, 163, 482, 545, 764, 920, 1007
MlyI GAGTC 3 cut(s) 141, 634, 913
MmeI TCCRAC 1 cut(s) 104
Mph1103I ATGCAT 2 cut(s) 636, 750
MroXI GAANNNNTTC 2 cut(s) 362, 984
MseI TTAA 1 cut(s) 857
MspI CCGG 2 cut(s) 35, 55
MspR9I CCNGG 4 cut(s) 56, 338, 839, 915
MvaI CCWGG 3 cut(s) 338, 839, 915
MwoI GCNNNNNNNGC 4 cut(s) 245, 410, 959, 965
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 600, 894
NlaIII CATG 3 cut(s) 400, 497, 647
NlaIV GGNNCC 1 cut(s) 107
NsiI ATGCAT 2 cut(s) 636, 750
NspV TTCGAA 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 813
PagI TCATGA 2 cut(s) 493, 643
PciSI GCTCTTC 2 cut(s) 199, 298
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 820
PdmI GAANNNNTTC 2 cut(s) 362, 984
PkrI GCNGC 4 cut(s) 177, 250, 880, 961
PleI GAGTC 3 cut(s) 141, 634, 912
PpsI GAGTC 3 cut(s) 141, 634, 912
Psp6I CCWGG 3 cut(s) 336, 837, 913
PspGI CCWGG 3 cut(s) 336, 837, 913
PspN4I GGNNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 894
RsaI GTAC 1 cut(s) 912
RsaNI GTAC 1 cut(s) 911
SapI GCTCTTC 2 cut(s) 199, 298
SaqAI TTAA 1 cut(s) 857
SatI GCNGC 4 cut(s) 176, 249, 879, 960
Sau3AI GATC 2 cut(s) 600, 894
SchI GAGTC 3 cut(s) 141, 634, 913
ScrFI CCNGG 4 cut(s) 56, 338, 839, 915
SfaNI GCATC 2 cut(s) 222, 442
SfcI CTRYAG 1 cut(s) 327
Sfr274I CTCGAG 1 cut(s) 813
SfuI TTCGAA 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 813
SmlI CTYRAG 2 cut(s) 813, 963
SmoI CTYRAG 2 cut(s) 813, 963
Sse9I AATT 8 cut(s) 41, 110, 163, 482, 545, 764, 920, 1007
SsiI CCGC 3 cut(s) 173, 176, 249
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 4 cut(s) 54, 336, 837, 913
StyI CCWWGG 2 cut(s) 216, 954
TaaI ACNGT 3 cut(s) 328, 617, 888
TaiI ACGT 1 cut(s) 203
TaqI TCGA 7 cut(s) 197, 296, 366, 691, 814, 823, 942
TasI AATT 8 cut(s) 41, 110, 163, 482, 545, 764, 920, 1007
TauI GCSGC 2 cut(s) 178, 251
Tru1I TTAA 1 cut(s) 857
Tru9I TTAA 1 cut(s) 857
TscAI CASTG 2 cut(s) 72, 325
TseI GCWGC 2 cut(s) 878, 959
TspDTI ATGAA 6 cut(s) 35, 422, 462, 494, 510, 546
TspRI CASTG 2 cut(s) 72, 325
XagI CCTNNNNNAGG 1 cut(s) 836
XapI RAATTY 3 cut(s) 41, 920, 1007
XhoI CTCGAG 1 cut(s) 813
XmnI GAANNNNTTC 2 cut(s) 362, 984
XspI CTAG 1 cut(s) 281
ZraI GACGTC 1 cut(s) 201
Zsp2I ATGCAT 2 cut(s) 636, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.