Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005040

Physical Location & Seq

Genomic Coordinates Forward (+)

20170749 .. 20176283

Gene Structure 5535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0212400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGGAGAAGATGAGGAAATGGGGTTGGCTTCTGGGGTCATTAGCATCAATGCTTCTTCTGGTTTTGTTCTTGGCTGGTCATGGAACTTACGACGAGACGACGAGCCGAGTAAGACGATCACTAAGGAGCATAATTCCTCGGCGACAACAGGGGGTCAATTTACTAACAAGGGACCCCAAGAGGGTTGTTTTGGATAATGGCATTGTCAAAGTCATTTTCTCTAATCCGGGCGGATACGTTATTGGTATACAGTACAGAGGCCTTGACATACTTGAAATGGGGAATGAAGAAAATAATAGAGGGTACTGGGATGTGGTCTGGAAAAAGAATATAACTGACAAACTAGAAGCAACAAAATTTAGGGTTATTACCGCGAGGCCAGACCAAGCAGAAATTTCCTTCCTAAGAACATATGATGTTTCCCTTGGTAACGGCACGAACACAATTCCCTTGACCGTAGATAAAAGGTACATACTGCAGCGGGGTGGTTCTGGTTTCTATGCATATGGAATATTCGAGCGCCTTGATGGGTGGCCGGCAGTACAGGATATGGATCAAATTAGAATGGTTTACAAGCTTGAACAAGCCAAATTTCATTATATGGCGTTATCAGACACCAGGCAAAGAAGCATGCCAACAGCAGCAGACCGTGGTCGTGGTCAGAAACTTGCGTATAAAGAAGCTTGTCTTTTGACTAATCCAAGCAATCCTGACTTTAGAGGAGAGGTAGATGACAAGTACCAGTACTCAGTCGAGGACAAAGATAACAAAGTTCATGGTTGGATTAGTACTGATGAATCTGTGGGATTCTGGATGATCACACCCAGCGACGAATTTCGTACAGGAGGCCCCTTTAAGCAGGACCTCACCTCCCATGTTGGTCCAACCACCCTCTCTATGTTTGTTAGTACTCATTATGCTGGGAAGGAACTTCAGATCAAATTTGAAGAAGGTGAGGCATGGAAAAAGGTTTTTGGGCCTGTCTTTGTGTATCTTAATTCGGCTCCAAGCTCAAAGAATTCCATCCGTATACTTTGGAATGATGCTAAAAAGCAGATGCTTAAAGAAGTCAAGAACTGGCCGTATAATTTCACTCAATCCGAGGACTTTCCTTCTTCCCATCAACGAGGATCAGTTTTGGGCCAATTACTGATACATGATCGGTACATCAATGAGAGCCTTTTCCCAGCAAGTTCTGCTCATGTGGGATTGGCTGCACCTGGAGAAGTGGGATCATGGCAAAGGGAAAACAAGGGTTATCAATTTTGGAATCAAGCTAACGAAGAAGGTAGATTCATTATCAAAAATGTTCGACCCGGAAACTATAGTTTTTATGCATGGGTTCCTGGCATTGTTGGGGATTACAAATATGAGGCTGATATTACAATTACTCCAGGGTCTAATATCAAATTGGACAATCTTACTTACGAACCTCCAAGAAATGGTCCTACTTTGTGGGAAATTGGCATCCCTGATCGCACTGCTGCCGAATTCTACGTACCAGATCCTTATCCAACTCTTTTGAACAATTTGTACACCCAGAATCACTCAGAAAATTTTAGGCAATACGGGTTGTGGGCACGTTATGGAGAGCGATACCCTCATAATGATCTTGTGTACACCGTAGCTATCAACAATTACCATGATGATTGGTTCTATGCTCAAGTGACCAGAAATACTGGAAATGAAACCTATGCAGGCACGACGTGGCAAATTCTATTTGAACTTCATAATGTCACAAATCCAGGAAATTATACACTCCAATTGGCATTGGCCTCAGCAAACAATGCAGAATTGCAGGTTCGAATTAACAACAAGAGCGATGAGCAACCTCATTTTTCATCAAAGTTAATAGGAGGGGACAATGCGATAGCAAGACATGGAATTCATGGTTTGTACTGGTTGTTTAGTGTTGAGATACCAAGCTCGCTACTAAAAGAAGGAATCAACACCGTCTACCTTACGCAAGCGAGAGGTGGTGAAACTTTCCAAGGAGTCATGTATGACTACATCAGACTAGAAGCACCTTCATCACACACTGATTCACAAGTAGTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000154 GO:0002097 GO:0002101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0022613 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051391 GO:0051392 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1904812 GO:1990882 GO:1990883 GO:1990884 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

DUF1726 GNAT_acetyltr_2 Helicase_RecD tRNA_bind_2

Protein Analysis

686

Amino Acids

78.3

Weight (kDa)

6.62

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	52 - 243	5.4e-73	Rhamnogalacturonate lyase family
fn3_3	PF14686	398 - 471	1.4e-24	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	484 - 673	1.1e-49	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10490 AT1G10490 AT3G57940 AT3G57940
fragaria_vesca	FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910 FvH4_1g22910
malus_domestica	MD05G1028000.v1.1 MD10G1028600.v1.1
prunus_persica	Prupe.6G169200_v2.0.a1
pyrus_communis	pycom05g02010 pycom10g01860
rosa_chinensis	RchiOBHm_Chr2g0117351
rosa_laevigata	RLG00000018344
rosa_multiflora	Rmu_co7970672.1_g000001 Rmu_sc0004436.1_g000001 Rmu_sc0013504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126550
rosa_rugosa	Rorug02G0212300 Rorug02G0212400
rosa_samantha	Rh2AG267400 Rh2BG279800 Rh2DG274500 Rh2DG293800
rosa_wichuraiana	Rw2G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1789
AccB7I	CCANNNNNTGG	1 cut(s)	1442
AccI	GTMKAC	3 cut(s)	247, 1030, 1956
AccII	CGCG	1 cut(s)	374
AciI	CCGC	3 cut(s)	231, 372, 481
AclWI	GGATC	4 cut(s)	561, 1138, 1240, 1499
AcoI	YGGCCR	2 cut(s)	533, 1079
AcuI	CTGAAG	1 cut(s)	917
AdeI	CACNNNGTG	1 cut(s)	1707
AfiI	CCNNNNNNNGG	2 cut(s)	181, 1442
AgsI	TTSAA	5 cut(s)	275, 581, 947, 1525, 1724
AjiI	CACGTC	1 cut(s)	1707
AjnI	CCWGG	5 cut(s)	617, 1219, 1345, 1393, 1744
AluBI	AGCT	6 cut(s)	577, 683, 1011, 1277, 1628, 1926
AluI	AGCT	6 cut(s)	577, 683, 1011, 1277, 1628, 1926
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	4 cut(s)	561, 1138, 1240, 1499
AoxI	GGCC	8 cut(s)	259, 377, 533, 847, 977, 1079, 1141, 1773
ApeKI	GCWGC	4 cut(s)	478, 641, 1214, 1484
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	7 cut(s)	172, 848, 862, 881, 977, 1141, 1445
AsuC2I	CCSGG	2 cut(s)	228, 1317
AsuHPI	GGTGA	3 cut(s)	859, 965, 1991
AsuII	TTCGAA	1 cut(s)	1804
AvaII	GGWCC	4 cut(s)	172, 862, 881, 1445
BaeGI	GKGCMC	1 cut(s)	1582
BbvCI	CCTCAGC	1 cut(s)	1777
BbvI	GCAGC	4 cut(s)	490, 653, 1201, 1471
BccI	CCATC	3 cut(s)	521, 1031, 1128
BceAI	ACGGC	2 cut(s)	448, 1066
BciT130I	CCWGG	5 cut(s)	619, 1221, 1347, 1395, 1746
BciVI	GTATCC	1 cut(s)	227
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	2 cut(s)	228, 1317
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	344, 2018
BfmI	CTRYAG	2 cut(s)	476, 1324
BfoI	RGCGCY	1 cut(s)	523
BfuAI	ACCTGC	1 cut(s)	1789
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	4 cut(s)	479, 642, 1215, 1485
BlsI	GCNGC	4 cut(s)	480, 643, 1216, 1486
BmcAI	AGTACT	3 cut(s)	746, 790, 910
Bme1390I	CCNGG	7 cut(s)	228, 619, 1221, 1317, 1347, 1395, 1746
Bme18I	GGWCC	4 cut(s)	172, 862, 881, 1445
BmgBI	CACGTC	1 cut(s)	1707
BmgT120I	GGNCC	7 cut(s)	172, 848, 862, 881, 977, 1141, 1445
BmiI	GGNNCC	5 cut(s)	173, 174, 850, 1005, 1344
BmrFI	CCNGG	7 cut(s)	228, 619, 1221, 1317, 1347, 1395, 1746
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	4 cut(s)	53, 1033, 1047, 1476
BmuI	ACTGGG	1 cut(s)	316
BoxI	GACNNNNGTC	1 cut(s)	651
BpmI	CTGGAG	2 cut(s)	1242, 1377
Bpu10I	CCTNAGC	1 cut(s)	1777
Bpu14I	TTCGAA	1 cut(s)	1804
BpuEI	CTTGAG	1 cut(s)	1647
BpuMI	CCSGG	2 cut(s)	228, 1317
BsaAI	YACGTR	1 cut(s)	1498
BsaBI	GATNNNNATC	2 cut(s)	552, 1509
BsaJI	CCNNGG	6 cut(s)	137, 424, 649, 1101, 1394, 1990
BsaXI	ACNNNNNCTCC	4 cut(s)	854, 884, 1375, 1405
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 1442
Bse118I	RCCGGY	1 cut(s)	535
Bse1I	ACTGG	5 cut(s)	311, 742, 1082, 1684, 1904
Bse8I	GATNNNNATC	2 cut(s)	552, 1509
BseBI	CCWGG	5 cut(s)	619, 1221, 1347, 1395, 1746
BseDI	CCNNGG	6 cut(s)	137, 424, 649, 1101, 1394, 1990
BseGI	GGATG	4 cut(s)	316, 819, 1023, 1467
BseJI	GATNNNNATC	2 cut(s)	552, 1509
BseLI	CCNNNNNNNGG	2 cut(s)	181, 1442
BseMII	CTCAG	3 cut(s)	762, 1563, 1791
BseNI	ACTGG	5 cut(s)	311, 742, 1082, 1684, 1904
BseRI	GAGGAG	1 cut(s)	735
BseSI	GKGCMC	1 cut(s)	1582
BseXI	GCAGC	4 cut(s)	490, 653, 1201, 1471
BseYI	CCCAGC	3 cut(s)	824, 920, 1186
BsgI	GTGCAG	1 cut(s)	1200
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	8 cut(s)	261, 379, 535, 849, 979, 1081, 1143, 1775
BsiSI	CCGG	3 cut(s)	227, 536, 1317
BslFI	GGGAC	2 cut(s)	185, 1874
BslI	CCNNNNNNNGG	2 cut(s)	181, 1442
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	185, 1874
BsnI	GGCC	8 cut(s)	261, 379, 535, 849, 979, 1081, 1143, 1775
Bsp119I	TTCGAA	1 cut(s)	1804
Bsp1286I	GDGCHC	1 cut(s)	1582
Bsp1407I	TGTACA	2 cut(s)	1533, 1617
BspACI	CCGC	3 cut(s)	231, 372, 481
BspANI	GGCC	8 cut(s)	261, 379, 535, 849, 979, 1081, 1143, 1775
BspCNI	CTCAG	3 cut(s)	761, 1562, 1790
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	5 cut(s)	173, 174, 850, 1005, 1344
BspMAI	CTGCAG	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	1789
BspPI	GGATC	4 cut(s)	561, 1138, 1240, 1499
BspT104I	TTCGAA	1 cut(s)	1804
BsrFI	RCCGGY	1 cut(s)	535
BsrGI	TGTACA	2 cut(s)	1533, 1617
BsrI	ACTGG	5 cut(s)	311, 742, 1082, 1684, 1904
BssAI	RCCGGY	1 cut(s)	535
BssECI	CCNNGG	6 cut(s)	137, 424, 649, 1101, 1394, 1990
BssNAI	GTATAC	2 cut(s)	248, 1031
BssT1I	CCWWGG	2 cut(s)	424, 1990
Bst1107I	GTATAC	2 cut(s)	248, 1031
Bst2UI	CCWGG	5 cut(s)	619, 1221, 1347, 1395, 1746
Bst4CI	ACNGT	5 cut(s)	252, 457, 650, 1624, 1954
BstAPI	GCANNNNNTGC	2 cut(s)	1196, 1787
BstAUI	TGTACA	2 cut(s)	1533, 1617
BstBAI	YACGTR	1 cut(s)	1498
BstBI	TTCGAA	1 cut(s)	1804
BstC8I	GCNNGC	5 cut(s)	537, 632, 1699, 1928, 1968
BstDEI	CTNAG	5 cut(s)	122, 404, 748, 1549, 1777
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	4 cut(s)	316, 819, 1023, 1467
BstFNI	CGCG	1 cut(s)	374
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstMAI	GTCTC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	1196, 1787
BstNI	CCWGG	5 cut(s)	619, 1221, 1347, 1395, 1746
BstNSI	RCATGY	1 cut(s)	634
BstPAI	GACNNNNGTC	1 cut(s)	651
BstSCI	CCNGG	7 cut(s)	226, 617, 1219, 1315, 1345, 1393, 1744
BstSFI	CTRYAG	2 cut(s)	476, 1324
BstSLI	GKGCMC	1 cut(s)	1582
BstSNI	TACGTA	1 cut(s)	1498
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	4 cut(s)	490, 653, 1201, 1471
BstX2I	RGATCY	1 cut(s)	1504
BstYI	RGATCY	1 cut(s)	1504
BstZ17I	GTATAC	2 cut(s)	248, 1031
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	8 cut(s)	261, 379, 535, 849, 979, 1081, 1143, 1775
BtgI	CCRYGG	1 cut(s)	649
BtgZI	GCGATG	1 cut(s)	1836
BtrI	CACGTC	1 cut(s)	1707
BtsCI	GGATG	4 cut(s)	316, 819, 1023, 1467
BtsI	GCAGTG	1 cut(s)	1479
BtsIMutI	CAGTG	2 cut(s)	1479, 2037
BveI	ACCTGC	1 cut(s)	1789
Cac8I	GCNNGC	5 cut(s)	537, 632, 1699, 1928, 1968
CfoI	GCGC	1 cut(s)	522
Cfr10I	RCCGGY	1 cut(s)	535
Cfr13I	GGNCC	7 cut(s)	172, 848, 862, 881, 977, 1141, 1445
DdeI	CTNAG	5 cut(s)	122, 404, 748, 1549, 1777
DraIII	CACNNNGTG	1 cut(s)	1707
EaeI	YGGCCR	2 cut(s)	533, 1079
EciI	GGCGGA	1 cut(s)	246
Eco105I	TACGTA	1 cut(s)	1498
Eco130I	CCWWGG	2 cut(s)	424, 1990
Eco147I	AGGCCT	1 cut(s)	261
Eco47I	GGWCC	4 cut(s)	172, 862, 881, 1445
Eco57I	CTGAAG	1 cut(s)	917
EcoO109I	RGGNCCY	3 cut(s)	172, 848, 862
EcoRI	GAATTC	3 cut(s)	1018, 1490, 1884
EcoRII	CCWGG	5 cut(s)	617, 1219, 1345, 1393, 1744
EcoT14I	CCWWGG	2 cut(s)	424, 1990
EcoT22I	ATGCAT	2 cut(s)	505, 1339
ErhI	CCWWGG	2 cut(s)	424, 1990
Esp3I	CGTCTC	1 cut(s)	89
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	2 cut(s)	185, 1874
FauI	CCCGC	1 cut(s)	474
FauNDI	CATATG	2 cut(s)	412, 505
FbaI	TGATCA	1 cut(s)	816
FblI	GTMKAC	3 cut(s)	247, 1030, 1956
Fnu4HI	GCNGC	4 cut(s)	479, 642, 1215, 1485
FokI	GGATG	4 cut(s)	323, 826, 1010, 1454
Fsp4HI	GCNGC	4 cut(s)	479, 642, 1215, 1485
FspBI	CTAG	2 cut(s)	344, 2018
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	4 cut(s)	479, 642, 1215, 1485
GsaI	CCCAGC	3 cut(s)	828, 924, 1190
GsuI	CTGGAG	2 cut(s)	1242, 1377
HaeII	RGCGCY	1 cut(s)	523
HaeIII	GGCC	8 cut(s)	261, 379, 535, 849, 979, 1081, 1143, 1775
HapII	CCGG	3 cut(s)	227, 536, 1317
HhaI	GCGC	1 cut(s)	522
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HindIII	AAGCTT	2 cut(s)	575, 681
HinfI	GANTC	8 cut(s)	797, 807, 1270, 1293, 1543, 1944, 1995, 2042
HpaII	CCGG	3 cut(s)	227, 536, 1317
HphI	GGTGA	3 cut(s)	859, 965, 1991
Hpy166II	GTNNAC	7 cut(s)	248, 571, 1031, 1536, 1618, 1620, 1957
Hpy188I	TCNGA	6 cut(s)	613, 663, 936, 1102, 1552, 2015
Hpy188III	TCNNGA	4 cut(s)	319, 710, 811, 1072
Hpy8I	GTNNAC	7 cut(s)	248, 571, 1031, 1536, 1618, 1620, 1957
Hpy99I	CGWCG	4 cut(s)	95, 103, 833, 1708
HpyAV	CCTTC	7 cut(s)	409, 919, 944, 1122, 1280, 1934, 2037
HpyCH4III	ACNGT	5 cut(s)	252, 457, 650, 1624, 1954
HpyCH4IV	ACGT	4 cut(s)	237, 1497, 1582, 1706
HpyCH4V	TGCA	7 cut(s)	478, 503, 1217, 1337, 1697, 1790, 1798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1196, 1787
HpyF3I	CTNAG	5 cut(s)	122, 404, 748, 1549, 1777
HpySE526I	ACGT	4 cut(s)	237, 1497, 1582, 1706
HspAI	GCGC	1 cut(s)	520
KflI	GGGWCCC	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	535
KroNI	GCCGGC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	816
LmnI	GCTCC	2 cut(s)	126, 1009
Lsp1109I	GCAGC	4 cut(s)	490, 653, 1201, 1471
LweI	GCATC	4 cut(s)	53, 1033, 1047, 1476
MaeI	CTAG	2 cut(s)	344, 2018
MaeII	ACGT	4 cut(s)	237, 1497, 1582, 1706
MaeIII	GTNAC	3 cut(s)	428, 1666, 1735
MboII	GAAGA	6 cut(s)	19, 47, 299, 959, 1107, 1295
MfeI	CAATTG	1 cut(s)	1763
MflI	RGATCY	1 cut(s)	1504
MhlI	GDGCHC	1 cut(s)	1582
MlyI	GAGTC	1 cut(s)	2004
MmeI	TCCRAC	3 cut(s)	761, 908, 1538
Mph1103I	ATGCAT	2 cut(s)	505, 1339
MroNI	GCCGGC	1 cut(s)	535
MseI	TTAA	5 cut(s)	855, 996, 1062, 1809, 1850
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	3 cut(s)	227, 536, 1317
MspR9I	CCNGG	7 cut(s)	228, 619, 1221, 1317, 1347, 1395, 1746
MunI	CAATTG	1 cut(s)	1763
MvaI	CCWGG	5 cut(s)	619, 1221, 1347, 1395, 1746
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	1196, 1787
NaeI	GCCGGC	1 cut(s)	537
NciI	CCSGG	2 cut(s)	228, 1317
NdeI	CATATG	2 cut(s)	412, 505
NgoMIV	GCCGGC	1 cut(s)	535
NlaIV	GGNNCC	5 cut(s)	173, 174, 850, 1005, 1344
NmeAIII	GCCGAG	2 cut(s)	118, 131
NmuCI	GTSAC	2 cut(s)	1666, 1735
NsiI	ATGCAT	2 cut(s)	505, 1339
NspI	RCATGY	1 cut(s)	634
NspV	TTCGAA	1 cut(s)	1804
PaeI	GCATGC	1 cut(s)	634
PceI	AGGCCT	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	537
PfeI	GAWTC	7 cut(s)	797, 807, 1270, 1293, 1543, 1944, 2042
PflMI	CCANNNNNTGG	1 cut(s)	1442
PfoI	TCCNGGA	1 cut(s)	1744
PkrI	GCNGC	4 cut(s)	480, 643, 1216, 1486
PleI	GAGTC	1 cut(s)	2003
PpsI	GAGTC	1 cut(s)	2003
Ppu21I	YACGTR	1 cut(s)	1498
PpuMI	RGGWCCY	2 cut(s)	172, 862
PshAI	GACNNNNGTC	1 cut(s)	651
Psp5II	RGGWCCY	2 cut(s)	172, 862
Psp6I	CCWGG	5 cut(s)	617, 1219, 1345, 1393, 1744
PspFI	CCCAGC	3 cut(s)	824, 920, 1186
PspGI	CCWGG	5 cut(s)	617, 1219, 1345, 1393, 1744
PspN4I	GGNNCC	5 cut(s)	173, 174, 850, 1005, 1344
PspPI	GGNCC	7 cut(s)	172, 848, 862, 881, 977, 1141, 1445
PspPPI	RGGWCCY	2 cut(s)	172, 862
PsrI	GAACNNNNNNTAC	2 cut(s)	1517, 1549
PstI	CTGCAG	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	1504
SaqAI	TTAA	5 cut(s)	855, 996, 1062, 1809, 1850
SatI	GCNGC	4 cut(s)	479, 642, 1215, 1485
Sau96I	GGNCC	7 cut(s)	172, 848, 862, 881, 977, 1141, 1445
ScaI	AGTACT	3 cut(s)	746, 790, 910
SchI	GAGTC	1 cut(s)	2004
ScrFI	CCNGG	7 cut(s)	228, 619, 1221, 1317, 1347, 1395, 1746
SduI	GDGCHC	1 cut(s)	1582
SfaNI	GCATC	4 cut(s)	53, 1033, 1047, 1476
SfcI	CTRYAG	2 cut(s)	476, 1324
SfuI	TTCGAA	1 cut(s)	1804
SinI	GGWCC	4 cut(s)	172, 862, 881, 1445
SmlI	CTYRAG	1 cut(s)	1662
SmoI	CTYRAG	1 cut(s)	1662
SnaBI	TACGTA	1 cut(s)	1498
SphI	GCATGC	1 cut(s)	634
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	3 cut(s)	231, 372, 481
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	344, 2018
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	7 cut(s)	226, 617, 1219, 1315, 1345, 1393, 1744
StyI	CCWWGG	2 cut(s)	424, 1990
TaaI	ACNGT	5 cut(s)	252, 457, 650, 1624, 1954
TaiI	ACGT	4 cut(s)	240, 1500, 1585, 1709
TaqI	TCGA	4 cut(s)	516, 753, 1312, 1804
TatI	WGTACW	8 cut(s)	252, 541, 744, 788, 908, 1533, 1617, 1896
TfiI	GAWTC	7 cut(s)	797, 807, 1270, 1293, 1543, 1944, 2042
Tru1I	TTAA	5 cut(s)	855, 996, 1062, 1809, 1850
Tru9I	TTAA	5 cut(s)	855, 996, 1062, 1809, 1850
TscAI	CASTG	2 cut(s)	1486, 2044
TseFI	GTSAC	2 cut(s)	1666, 1735
TseI	GCWGC	4 cut(s)	478, 641, 1214, 1484
Tsp45I	GTSAC	2 cut(s)	1666, 1735
TspGWI	ACGGA	1 cut(s)	1016
TspRI	CASTG	2 cut(s)	1486, 2044
Van91I	CCANNNNNTGG	1 cut(s)	1442
VpaK11BI	GGWCC	4 cut(s)	172, 862, 881, 1445
XceI	RCATGY	1 cut(s)	634
XmiI	GTMKAC	3 cut(s)	247, 1030, 1956
XspI	CTAG	2 cut(s)	344, 2018
ZrmI	AGTACT	3 cut(s)	746, 790, 910
Zsp2I	ATGCAT	2 cut(s)	505, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.