Rmu_sc0004436.1_g000001

RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004436.1
Physical Location & Seq
Reverse (-)
1 .. 5028
5028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004436.1_g000001.1.cds

Sequence Viewer

Length: 1330 bp
atgaggaagaaggtcgacgagcgcatcagaaccctgataagcaatggcgtcagaaacaagcaccgctccatgttcgtcatcgtcggcgacaagtcacgtgaccagattgtgaatcttcactatatgctcagcaatgaattgaagaaatcaaagcctactgtgttgtggtgctacaaggacaagcttgagctcagcagtcacaagaaaaaacgtgctaagcaggtgaaaaagctaatgcagaggggtctgcttgatcccgagaaggttgatcccttctcactttttatcgaaagtagcggagtgacctattgcttgtacaaggattctgagagaattcttggtaatacatttgggatgtgtatacttcaggattttgaggccgtgacaccaaatctactggcaagaacaatagagactgtggagggtggcggactaattatattgttgcttcgttctctaacctcactcaccaacttatacaccatggttatggatgtccatgacaggtttcgaaccgaatcacattcccaggctactggccgtttcaatgagcgtttcttattatcacttgcatcatgcaaagcatgtgtggttatggatgatgaactgaatattttaccaatttcatctcacataaggtcaattactccagttccagttatagaggactctgagggaatatcagagtcagaaagggaattgaaggatctaaaagaacaactaagtgacgcctttcccgtcggccctttaataaagaaatgttgtacgctcgaccagggaaatgctgttgctacatttctcgatgcaatattggataaggcactccgaagtactgttgccttgctcgctgctcgtggccgtgggaagtcagctgcacttggtttggctattgctggagctattgctgcagggtattcaaatatctttgtaactgcaccgagccctgagaacttgaagaccttgttcgaatttgtttgcaagggtttggatgcattggattataaggaacatttagattatgatgtggagaaaagttccaaccctgccttgaagaaagcaactctaaagatcaatatattcaagcagcacagacaaacaattcagtacatacagccccatgagcatgaaaaactttcccaagttgaattattggttgttgatgaggctgctgctattccactgccagtggttaagtctttgcttggcccttatctggtcttcctttcatctacagttaatggctatgaaggtactggtcggtctttgtctctaaagcttctacagcaattggaagagcaaagcctgatgtctgctaatggccctatatctg

Protein Analysis

443

Amino Acids

49.28

Weight (kDa)

8.6

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1002
AarI CACCTGC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 66
AccI GTMKAC 2 cut(s) 15, 361
AciI CCGC 3 cut(s) 64, 297, 429
AclWI GGATC 3 cut(s) 248, 263, 714
AcoI YGGCCR 2 cut(s) 538, 856
AcsI RAATTY 2 cut(s) 333, 968
AcuI CTGAAG 1 cut(s) 350
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 2 cut(s) 48, 729
AfaI GTAC 5 cut(s) 317, 766, 832, 1106, 1252
AfiI CCNNNNNNNGG 1 cut(s) 1213
AgsI TTSAA 8 cut(s) 142, 547, 703, 918, 955, 1051, 1081, 1145
AjnI CCWGG 2 cut(s) 528, 774
AluBI AGCT 6 cut(s) 184, 190, 232, 872, 899, 1276
AluI AGCT 6 cut(s) 184, 190, 232, 872, 899, 1276
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 407, 1272
AlwI GGATC 3 cut(s) 248, 263, 714
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 6 cut(s) 378, 538, 742, 856, 1204, 1318
ApeKI GCWGC 6 cut(s) 848, 872, 905, 1084, 1166, 1169
ApoI RAATTY 2 cut(s) 333, 968
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 743, 1205, 1319
AsuHPI GGTGA 2 cut(s) 235, 460
AsuII TTCGAA 2 cut(s) 511, 966
AvaI CYCGRG 1 cut(s) 257
BanII GRGCYC 2 cut(s) 192, 944
BauI CACGAG 1 cut(s) 852
BbrPI CACGTG 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 962, 1210
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 6 cut(s) 835, 859, 892, 1096, 1153, 1156
BceAI ACGGC 3 cut(s) 365, 525, 843
BciT130I CCWGG 2 cut(s) 530, 776
BcoDI GTCTC 2 cut(s) 407, 1272
BfmI CTRYAG 3 cut(s) 906, 1230, 1280
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 6 cut(s) 849, 873, 906, 1085, 1167, 1170
BlpI GCTNAGC 3 cut(s) 128, 191, 216
BlsI GCNGC 6 cut(s) 850, 874, 907, 1086, 1168, 1171
BmcAI AGTACT 1 cut(s) 832
Bme1390I CCNGG 2 cut(s) 530, 776
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 3 cut(s) 743, 1205, 1319
BmrFI CCNGG 2 cut(s) 530, 776
BmsI GCATC 4 cut(s) 33, 581, 793, 979
BpiI GAAGAC 2 cut(s) 962, 1210
BpmI CTGGAG 2 cut(s) 633, 915
Bpu1102I GCTNAGC 3 cut(s) 128, 191, 216
Bpu14I TTCGAA 2 cut(s) 511, 966
BpuEI CTTGAG 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 2 cut(s) 48, 729
BsaJI CCNNGG 4 cut(s) 483, 528, 775, 859
Bsc4I CCNNNNNNNGG 1 cut(s) 1213
Bse1I ACTGG 6 cut(s) 402, 541, 650, 656, 1184, 1258
Bse3DI GCAATG 2 cut(s) 49, 139
BseBI CCWGG 2 cut(s) 530, 776
BseDI CCNNGG 4 cut(s) 483, 528, 775, 859
BseGI GGATG 4 cut(s) 360, 499, 604, 994
BseLI CCNNNNNNNGG 1 cut(s) 1213
BseMI GCAATG 2 cut(s) 49, 139
BseMII CTCAG 5 cut(s) 142, 205, 318, 663, 936
BseNI ACTGG 6 cut(s) 402, 541, 650, 656, 1184, 1258
BseXI GCAGC 6 cut(s) 835, 859, 892, 1096, 1153, 1156
BsgI GTGCAG 2 cut(s) 858, 918
BshFI GGCC 6 cut(s) 380, 540, 744, 858, 1206, 1320
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 1213
BsmAI GTCTC 2 cut(s) 407, 1272
BsnI GGCC 6 cut(s) 380, 540, 744, 858, 1206, 1320
BsoBI CYCGRG 1 cut(s) 257
Bsp119I TTCGAA 2 cut(s) 511, 966
Bsp1286I GDGCHC 2 cut(s) 192, 944
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 4 cut(s) 253, 268, 706, 1068
Bsp1720I GCTNAGC 3 cut(s) 128, 191, 216
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 3 cut(s) 64, 297, 429
BspANI GGCC 6 cut(s) 380, 540, 744, 858, 1206, 1320
BspCNI CTCAG 5 cut(s) 141, 204, 319, 664, 937
BspMAI CTGCAG 1 cut(s) 910
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 3 cut(s) 248, 263, 714
BspQI GCTCTTC 1 cut(s) 1287
BspT104I TTCGAA 2 cut(s) 511, 966
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 2 cut(s) 49, 139
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 6 cut(s) 402, 541, 650, 656, 1184, 1258
BssECI CCNNGG 4 cut(s) 483, 528, 775, 859
BssMI GATC 4 cut(s) 253, 268, 706, 1068
BssNAI GTATAC 1 cut(s) 362
BssNI GRCGYC 2 cut(s) 48, 729
BssSI CACGAG 1 cut(s) 852
BssT1I CCWWGG 1 cut(s) 483
Bst1107I GTATAC 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 852
Bst2UI CCWGG 2 cut(s) 530, 776
Bst4CI ACNGT 4 cut(s) 160, 418, 835, 1234
Bst6I CTCTTC 1 cut(s) 1287
BstACI GRCGYC 2 cut(s) 48, 729
BstAUI TGTACA 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 98
BstBI TTCGAA 2 cut(s) 511, 966
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 7 cut(s) 128, 191, 216, 327, 672, 722, 945
BstDSI CCRYGG 2 cut(s) 483, 859
BstF5I GGATG 4 cut(s) 360, 499, 604, 994
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 4 cut(s) 256, 271, 709, 1071
BstMAI GTCTC 2 cut(s) 407, 1272
BstMBI GATC 4 cut(s) 253, 268, 706, 1068
BstMWI GCNNNNNNNGC 4 cut(s) 845, 905, 1120, 1282
BstNI CCWGG 2 cut(s) 530, 776
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 2 cut(s) 528, 774
BstSFI CTRYAG 3 cut(s) 906, 1230, 1280
BstV1I GCAGC 6 cut(s) 835, 859, 892, 1096, 1153, 1156
BstV2I GAAGAC 2 cut(s) 962, 1210
BstX2I RGATCY 1 cut(s) 706
BstXI CCANNNNNNTGG 2 cut(s) 490, 536
BstYI RGATCY 1 cut(s) 706
BstZ17I GTATAC 1 cut(s) 362
BsuRI GGCC 6 cut(s) 380, 540, 744, 858, 1206, 1320
BtgI CCRYGG 2 cut(s) 483, 859
BtsCI GGATG 4 cut(s) 360, 499, 604, 994
BtsI GCAGTG 1 cut(s) 1178
BtsIMutI CAGTG 2 cut(s) 1178, 1191
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 846
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 743, 1205, 1319
CseI GACGC 2 cut(s) 37, 737
Csp6I GTAC 5 cut(s) 316, 765, 831, 1105, 1251
CviAII CATG 7 cut(s) 70, 484, 500, 576, 585, 1118, 1124
CviQI GTAC 5 cut(s) 316, 765, 831, 1105, 1251
DdeI CTNAG 7 cut(s) 128, 191, 216, 327, 672, 722, 945
DpnI GATC 4 cut(s) 255, 270, 708, 1070
DpnII GATC 4 cut(s) 253, 268, 706, 1068
EaeI YGGCCR 2 cut(s) 538, 856
Eam1104I CTCTTC 1 cut(s) 1287
EarI CTCTTC 1 cut(s) 1287
EciI GGCGGA 1 cut(s) 444
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 2 cut(s) 192, 944
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 350
Eco72I CACGTG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 528, 774
EcoT14I CCWWGG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 994
EcoT38I GRGCYC 2 cut(s) 192, 944
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 7 cut(s) 73, 487, 503, 579, 588, 1121, 1127
FatI CATG 7 cut(s) 69, 483, 499, 575, 584, 1117, 1123
FblI GTMKAC 2 cut(s) 15, 361
Fnu4HI GCNGC 6 cut(s) 849, 873, 906, 1085, 1167, 1170
FokI GGATG 4 cut(s) 367, 506, 611, 1001
FriOI GRGCYC 2 cut(s) 192, 944
Fsp4HI GCNGC 6 cut(s) 849, 873, 906, 1085, 1167, 1170
GlaI GCGC 1 cut(s) 23
GluI GCNGC 6 cut(s) 849, 873, 906, 1085, 1167, 1170
GsuI CTGGAG 2 cut(s) 633, 915
HaeIII GGCC 6 cut(s) 380, 540, 744, 858, 1206, 1320
HgaI GACGC 2 cut(s) 37, 737
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 2 cut(s) 48, 729
Hin1II CATG 7 cut(s) 73, 487, 503, 579, 588, 1121, 1127
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 182, 1274
HinfI GANTC 5 cut(s) 112, 323, 518, 668, 686
HphI GGTGA 2 cut(s) 235, 460
Hpy166II GTNNAC 2 cut(s) 16, 362
Hpy188I TCNGA 7 cut(s) 29, 53, 328, 673, 685, 691, 827
Hpy188III TCNNGA 3 cut(s) 257, 368, 800
Hpy8I GTNNAC 2 cut(s) 16, 362
Hpy99I CGWCG 3 cut(s) 20, 86, 743
HpyAV CCTTC 5 cut(s) 4, 256, 283, 697, 1241
HpyCH4III ACNGT 4 cut(s) 160, 418, 835, 1234
HpyCH4IV ACGT 2 cut(s) 97, 211
HpyCH4V TGCA 9 cut(s) 238, 572, 579, 806, 875, 908, 935, 978, 992
HpyF10VI GCNNNNNNNGC 4 cut(s) 845, 905, 1120, 1282
HpyF3I CTNAG 7 cut(s) 128, 191, 216, 327, 672, 722, 945
HpySE526I ACGT 2 cut(s) 97, 211
Hsp92I GRCGYC 2 cut(s) 48, 729
Hsp92II CATG 7 cut(s) 73, 487, 503, 579, 588, 1121, 1127
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 4 cut(s) 253, 268, 706, 1068
LguI GCTCTTC 1 cut(s) 1287
LmnI GCTCC 2 cut(s) 71, 896
Lsp1109I GCAGC 6 cut(s) 835, 859, 892, 1096, 1153, 1156
LweI GCATC 4 cut(s) 33, 581, 793, 979
MaeII ACGT 2 cut(s) 97, 211
MaeIII GTNAC 7 cut(s) 93, 98, 197, 301, 382, 725, 928
MalI GATC 4 cut(s) 255, 270, 708, 1070
MbiI CCGCTC 1 cut(s) 66
MboI GATC 4 cut(s) 253, 268, 706, 1068
MboII GAAGA 7 cut(s) 19, 107, 154, 967, 1063, 1210, 1304
MfeI CAATTG 1 cut(s) 1286
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 2 cut(s) 192, 944
MlyI GAGTC 2 cut(s) 662, 695
MmeI TCCRAC 1 cut(s) 1062
MnlI CCTC 7 cut(s) 234, 370, 415, 472, 658, 667, 1156
Mph1103I ATGCAT 1 cut(s) 994
MseI TTAA 3 cut(s) 749, 1191, 1236
MslI CAYNNNNRTG 2 cut(s) 488, 1122
MspA1I CMGCKG 1 cut(s) 872
MspR9I CCNGG 2 cut(s) 530, 776
MunI CAATTG 1 cut(s) 1286
MvaI CCWGG 2 cut(s) 530, 776
MwoI GCNNNNNNNGC 4 cut(s) 845, 905, 1120, 1282
NcoI CCATGG 1 cut(s) 483
NdeII GATC 4 cut(s) 253, 268, 706, 1068
NlaIII CATG 7 cut(s) 73, 487, 503, 579, 588, 1121, 1127
NmuCI GTSAC 6 cut(s) 93, 98, 197, 301, 382, 725
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 2 cut(s) 511, 966
PaqCI CACCTGC 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 1287
PcsI WCGNNNNNNNCGW 1 cut(s) 735
PfeI GAWTC 3 cut(s) 112, 323, 518
PkrI GCNGC 6 cut(s) 850, 874, 907, 1086, 1168, 1171
PleI GAGTC 2 cut(s) 662, 694
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
PpsI GAGTC 2 cut(s) 662, 694
Ppu21I YACGTR 1 cut(s) 98
PsiI TTATAA 1 cut(s) 1002
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 528, 774
PspCI CACGTG 1 cut(s) 98
PspGI CCWGG 2 cut(s) 528, 774
PspPI GGNCC 3 cut(s) 743, 1205, 1319
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 1 cut(s) 706
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 5 cut(s) 317, 766, 832, 1106, 1252
RsaNI GTAC 5 cut(s) 316, 765, 831, 1105, 1251
RseI CAYNNNNRTG 2 cut(s) 488, 1122
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 1287
SaqAI TTAA 3 cut(s) 749, 1191, 1236
SatI GCNGC 6 cut(s) 849, 873, 906, 1085, 1167, 1170
Sau3AI GATC 4 cut(s) 253, 268, 706, 1068
Sau96I GGNCC 3 cut(s) 743, 1205, 1319
ScaI AGTACT 1 cut(s) 832
SchI GAGTC 2 cut(s) 662, 695
ScrFI CCNGG 2 cut(s) 530, 776
SduI GDGCHC 2 cut(s) 192, 944
SfaNI GCATC 4 cut(s) 33, 581, 793, 979
SfcI CTRYAG 3 cut(s) 906, 1230, 1280
SfuI TTCGAA 2 cut(s) 511, 966
SmiMI CAYNNNNRTG 2 cut(s) 488, 1122
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SsiI CCGC 3 cut(s) 64, 297, 429
SspI AATATT 2 cut(s) 613, 810
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 528, 774
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 4 cut(s) 160, 418, 835, 1234
TaiI ACGT 2 cut(s) 100, 214
TaqI TCGA 6 cut(s) 15, 288, 511, 771, 801, 966
TaqII GACCGA 1 cut(s) 1248
TatI WGTACW 3 cut(s) 315, 830, 1104
TfiI GAWTC 3 cut(s) 112, 323, 518
Tru1I TTAA 3 cut(s) 749, 1191, 1236
Tru9I TTAA 3 cut(s) 749, 1191, 1236
TscAI CASTG 2 cut(s) 1185, 1191
TseFI GTSAC 6 cut(s) 93, 98, 197, 301, 382, 725
TseI GCWGC 6 cut(s) 848, 872, 905, 1084, 1166, 1169
Tsp45I GTSAC 6 cut(s) 93, 98, 197, 301, 382, 725
TspDTI ATGAA 6 cut(s) 150, 615, 618, 1140, 1215, 1260
TspRI CASTG 2 cut(s) 1185, 1191
XapI RAATTY 2 cut(s) 333, 968
XceI RCATGY 1 cut(s) 588
XmiI GTMKAC 2 cut(s) 15, 361
ZrmI AGTACT 1 cut(s) 832
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.