Rh2DG293900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012220
Physical Location & Seq
Forward (+)
34614968 .. 34617871
2904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG293900.1

Sequence Viewer

Length: 1089 bp
ATGGGTTCCTTGAGTGGTTTCTCTCTGCAACCCAAAACAGTGTTACCCAACACCAAAATTGTTACCCATAATCTCTGCTACAATCCACTCAAACCCCAATTCCTCAATCCTCACCATATTCAAAAGCCACCTTTTCCCCTATTCAAAATCATCTCTTCTCACTCAAACACTCCCAGCCACTCCTGTAAACTCTCAAATGTGTACTCTGCTCTCCAACCCCAGAAAAAGTTATCAACTTTTTTGGTGGAAAAAGTAGTGGGTTTGGTTATAGGGACAGTTTTCTTTGTTGGGTGTTTCAATATCAGAGCAGCTGTGGCACTACCAGCTCAAACAAGCAGTTCCAGTGAAAGTTTGGAGGAGAAGAGAGAGACCCAGAAGGGGAAAAGTGAGGAAGAAGAAATGAATGAGAGGATTTTGGAGGAGGACCCAAGAAATGTTGAGGCTTTGAAGGTGGTTGTGTACGGGAAAATGAGGAGAGGGAAGACAAAGGAGGCTGTCAAGTATGTGGAGAAGTTGATTGATGTCGAACCGGATGAAGTCGAATGGAGGCTGTTGCTGGCTCTTTGTTATGAGATCATGGGGGAATTGGGTACTGCTAAGAAGTTGTTTAAGGAAATATTGGAGAAGAGGCCTCTTTTGCTCAGAGCTTTGCATGGTCTAGCACTGGTTATGCACAAAAAGCGTGAAGGTCCAGCTGTTTTTGTGATGCTTGACAAGGCTTTAGAAATTGCACGTCGGGAAAAAAGAGTGATTGAGGAGAGAAATATAAGAATTCTGATCGCACAGATGCACGTTGTAAAGGGACAATTGGAAGAAGGCTTGAATAAATTTCAGGATCTTGTCAATGATGATCCCCGAGATTTTCGACCTTATCTTTGCCAGGGAATTATCTACAGTCTACTGAAGAAAAAGAAGGAAGCTGCAGAACAGTTTGAATTATATAGGGCTCTTGTGCCCGAAGAAGTTTCTCAGAAGGGATTTCTTGACGATGTTGTGTTGGCAGCCAAAACGAAACCTGGGGAACAGCTTCAGAGGGAGTTTGATGCTGAGTTTTCAAGCCAGAAAGGAAACGCCACTGAAGACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

362

Amino Acids

41.15

Weight (kDa)

8.73

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39470
fragaria_vesca FvH4_1g22920 FvH4_1g22920
malus_domestica MD15G1331000.v1.1
prunus_persica Prupe.6G169000_v2.0.a1 Prupe.6G169000_v2.0.a1
pyrus_communis pycom15g29420 pycom15g29430
rosa_chinensis RchiOBHm_Chr2g0117361
rosa_laevigata RLG00000018345
rosa_multiflora Rmu_sc0004436.1_g000002
rosa_roxburghii Rroxscaffold_2G00126540
rosa_rugosa Rorug02G0212400 Rorug02G0212400
rosa_samantha Rh2AG267500 Rh2BG279900 Rh2DG274600 Rh2DG293900
rosa_wichuraiana Rw2G021180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 898
AclWI GGATC 2 cut(s) 843, 845
AcsI RAATTY 2 cut(s) 771, 827
AcuI CTGAAG 2 cut(s) 923, 1013
AfaI GTAC 3 cut(s) 203, 461, 592
AfiI CCNNNNNNNGG 1 cut(s) 378
AflIII ACRYGT 1 cut(s) 1083
AgsI TTSAA 7 cut(s) 122, 145, 298, 448, 823, 935, 1056
AjiI CACGTC 2 cut(s) 734, 1084
AjnI CCWGG 2 cut(s) 879, 1015
AluBI AGCT 6 cut(s) 311, 326, 647, 695, 920, 1027
AluI AGCT 6 cut(s) 311, 326, 647, 695, 920, 1027
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 2 cut(s) 843, 845
Ama87I CYCGRG 1 cut(s) 855
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 3 cut(s) 308, 920, 1001
ApoI RAATTY 2 cut(s) 771, 827
ArsI GACNNNNNNTTYG 2 cut(s) 858, 890
Asp700I GAANNNNTTC 1 cut(s) 1026
AspS9I GGNCC 2 cut(s) 424, 689
AsuHPI GGTGA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 855
AvaII GGWCC 2 cut(s) 424, 689
BaeGI GKGCMC 1 cut(s) 957
BanII GRGCYC 1 cut(s) 949
BbsI GAAGAC 1 cut(s) 488
BbvI GCAGC 3 cut(s) 320, 907, 1013
BciT130I CCWGG 2 cut(s) 881, 1017
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 1 cut(s) 659
BfmI CTRYAG 2 cut(s) 892, 921
BisI GCNGC 3 cut(s) 309, 921, 1002
BlsI GCNGC 3 cut(s) 310, 922, 1003
Bme1390I CCNGG 2 cut(s) 881, 1017
Bme18I GGWCC 2 cut(s) 424, 689
BmeT110I CYCGRG 1 cut(s) 855
BmgBI CACGTC 2 cut(s) 734, 1084
BmgT120I GGNCC 2 cut(s) 424, 689
BmiI GGNNCC 2 cut(s) 7, 426
BmrFI CCNGG 2 cut(s) 881, 1017
BmsI GCATC 3 cut(s) 696, 777, 1033
BpiI GAAGAC 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 880, 1016
BsaWI WCCGGW 1 cut(s) 529
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 2 cut(s) 342, 669
BseBI CCWGG 2 cut(s) 881, 1017
BseDI CCNNGG 2 cut(s) 880, 1016
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 3 cut(s) 655, 983, 1038
BseNI ACTGG 2 cut(s) 342, 669
BseRI GAGGAG 4 cut(s) 371, 434, 487, 770
BseSI GKGCMC 1 cut(s) 957
BseXI GCAGC 3 cut(s) 320, 907, 1013
BseYI CCCAGC 1 cut(s) 173
BshFI GGCC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 1 cut(s) 530
BslFI GGGAC 2 cut(s) 286, 816
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 286, 816
BsnI GGCC 1 cut(s) 631
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 855
Bsp1286I GDGCHC 2 cut(s) 949, 957
Bsp143I GATC 4 cut(s) 573, 777, 835, 850
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 3 cut(s) 654, 982, 1039
BspLI GGNNCC 2 cut(s) 7, 426
BspMAI CTGCAG 1 cut(s) 925
BspPI GGATC 2 cut(s) 843, 845
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 342, 669
BssECI CCNNGG 2 cut(s) 880, 1016
BssMI GATC 4 cut(s) 573, 777, 835, 850
Bst2UI CCWGG 2 cut(s) 881, 1017
Bst4CI ACNGT 4 cut(s) 40, 277, 896, 930
Bst6I CTCTTC 3 cut(s) 160, 356, 620
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 4 cut(s) 597, 641, 969, 1047
BstF5I GGATG 1 cut(s) 538
BstKTI GATC 4 cut(s) 576, 780, 838, 853
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 4 cut(s) 573, 777, 835, 850
BstMWI GCNNNNNNNGC 4 cut(s) 314, 323, 637, 679
BstNI CCWGG 2 cut(s) 881, 1017
BstSCI CCNGG 2 cut(s) 879, 1015
BstSFI CTRYAG 2 cut(s) 892, 921
BstSLI GKGCMC 1 cut(s) 957
BstV1I GCAGC 3 cut(s) 320, 907, 1013
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 1 cut(s) 835
BstYI RGATCY 1 cut(s) 835
BsuRI GGCC 1 cut(s) 631
BtrI CACGTC 2 cut(s) 734, 1084
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 4 cut(s) 45, 349, 662, 1074
Cac8I GCNNGC 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 424, 689
Csp6I GTAC 3 cut(s) 202, 460, 591
CviAII CATG 2 cut(s) 577, 653
CviQI GTAC 3 cut(s) 202, 460, 591
DdeI CTNAG 4 cut(s) 597, 641, 969, 1047
DpnI GATC 4 cut(s) 575, 779, 837, 852
DpnII GATC 4 cut(s) 573, 777, 835, 850
Eam1104I CTCTTC 3 cut(s) 160, 356, 620
EarI CTCTTC 3 cut(s) 160, 356, 620
Eco147I AGGCCT 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 949
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 424, 689
Eco57I CTGAAG 2 cut(s) 923, 1013
Eco88I CYCGRG 1 cut(s) 855
EcoO109I RGGNCCY 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 771
EcoRII CCWGG 2 cut(s) 879, 1015
EcoT38I GRGCYC 1 cut(s) 949
FaeI CATG 2 cut(s) 580, 656
FaqI GGGAC 2 cut(s) 286, 816
FatI CATG 2 cut(s) 576, 652
FblI GTMKAC 1 cut(s) 898
Fnu4HI GCNGC 3 cut(s) 309, 921, 1002
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 949
Fsp4HI GCNGC 3 cut(s) 309, 921, 1002
FspBI CTAG 1 cut(s) 659
GluI GCNGC 3 cut(s) 309, 921, 1002
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 631
HapII CCGG 1 cut(s) 530
Hin1II CATG 2 cut(s) 580, 656
HpaII CCGG 1 cut(s) 530
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 4 cut(s) 188, 202, 460, 899
Hpy188I TCNGA 5 cut(s) 305, 644, 777, 972, 1032
Hpy188III TCNNGA 3 cut(s) 737, 833, 983
Hpy8I GTNNAC 4 cut(s) 188, 202, 460, 899
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 6 cut(s) 370, 442, 680, 809, 907, 967
HpyCH4III ACNGT 4 cut(s) 40, 277, 896, 930
HpyCH4IV ACGT 3 cut(s) 733, 792, 1083
HpyCH4V TGCA 6 cut(s) 28, 652, 673, 731, 790, 923
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 323, 637, 679
HpyF3I CTNAG 4 cut(s) 597, 641, 969, 1047
HpySE526I ACGT 3 cut(s) 733, 792, 1083
Hsp92II CATG 2 cut(s) 580, 656
Kzo9I GATC 4 cut(s) 573, 777, 835, 850
Lsp1109I GCAGC 3 cut(s) 320, 907, 1013
LweI GCATC 3 cut(s) 696, 777, 1033
MaeI CTAG 1 cut(s) 659
MaeII ACGT 3 cut(s) 733, 792, 1083
MaeIII GTNAC 2 cut(s) 42, 61
MalI GATC 4 cut(s) 575, 779, 837, 852
MboI GATC 4 cut(s) 573, 777, 835, 850
MboII GAAGA 9 cut(s) 147, 373, 404, 407, 493, 637, 824, 916, 971
MfeI CAATTG 1 cut(s) 806
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 2 cut(s) 949, 957
MluCI AATT 9 cut(s) 57, 98, 584, 726, 771, 806, 827, 885, 935
MmeI TCCRAC 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 1026
MseI TTAA 1 cut(s) 609
MspA1I CMGCKG 2 cut(s) 311, 695
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 2 cut(s) 881, 1017
MunI CAATTG 1 cut(s) 806
MvaI CCWGG 2 cut(s) 881, 1017
MwoI GCNNNNNNNGC 4 cut(s) 314, 323, 637, 679
NdeII GATC 4 cut(s) 573, 777, 835, 850
NlaIII CATG 2 cut(s) 580, 656
NlaIV GGNNCC 2 cut(s) 7, 426
PceI AGGCCT 1 cut(s) 631
PdmI GAANNNNTTC 1 cut(s) 1026
PkrI GCNGC 3 cut(s) 310, 922, 1003
PpuMI RGGWCCY 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 879, 1015
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 2 cut(s) 879, 1015
PspN4I GGNNCC 2 cut(s) 7, 426
PspPI GGNCC 2 cut(s) 424, 689
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 1 cut(s) 925
PsuI RGATCY 1 cut(s) 835
PvuII CAGCTG 2 cut(s) 311, 695
RsaI GTAC 3 cut(s) 203, 461, 592
RsaNI GTAC 3 cut(s) 202, 460, 591
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 3 cut(s) 309, 921, 1002
Sau3AI GATC 4 cut(s) 573, 777, 835, 850
Sau96I GGNCC 2 cut(s) 424, 689
ScrFI CCNGG 2 cut(s) 881, 1017
SduI GDGCHC 2 cut(s) 949, 957
SfaNI GCATC 3 cut(s) 696, 777, 1033
SfcI CTRYAG 2 cut(s) 892, 921
SinI GGWCC 2 cut(s) 424, 689
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 9 cut(s) 57, 98, 584, 726, 771, 806, 827, 885, 935
SseBI AGGCCT 1 cut(s) 631
SspI AATATT 1 cut(s) 618
SspMI CTAG 1 cut(s) 659
StuI AGGCCT 1 cut(s) 631
StyD4I CCNGG 2 cut(s) 879, 1015
TaaI ACNGT 4 cut(s) 40, 277, 896, 930
TaiI ACGT 3 cut(s) 736, 795, 1086
TaqI TCGA 3 cut(s) 525, 540, 865
TasI AATT 9 cut(s) 57, 98, 584, 726, 771, 806, 827, 885, 935
TatI WGTACW 1 cut(s) 201
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 4 cut(s) 45, 349, 669, 1081
TseI GCWGC 3 cut(s) 308, 920, 1001
TspDTI ATGAA 2 cut(s) 416, 549
TspRI CASTG 4 cut(s) 45, 349, 669, 1081
VpaK11BI GGWCC 2 cut(s) 424, 689
XapI RAATTY 2 cut(s) 771, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 898
XmnI GAANNNNTTC 1 cut(s) 1026
XspI CTAG 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.