FvH4_1g22920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012220
Physical Location & Seq
Forward (+)
14841310 .. 14844167
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22920.t1

Sequence Viewer

Length: 1089 bp
ATGGAGAGAAGACAAATGGGTTACTTGAGTGGCTTCTCTCTTCAACCCAAAACACTGTTACCCAACGCACAGATTGTTCCCCATAATCTCTGCTACAATTCACTCAAACCCCAATTCCTCAATCCTCACCTTATAAAAAACCCACCTTTTCCCCTACTCAAATCCATCTCTTCTCACTCAAACACCCCCACACACTCCTCAAAACTCCCAAATGTGTACTCTGCTCTCAAACCCCACAAGAATTTACCAACAATTTTGGTGGAAAAAGTAGTGGGTTTGGTTATAGGGACAGTTGTGTTTGTTGGGTGTTTCAATATCAGAGCAGCTGTGGCACTGCCAGCTCAAACAAGCAGTTCCAGTGAGAGTTTGGAGGAAAAGAGAGAGACCCAGAAAGGGAAGAGTGAGGAGGAAGAAATGTATGAGAGAGTTTTGGAGGGGGACCCAAGAAATTTTGAGGCTTTGAAAGTGCTTGTGTATGGGAAAATGAGGAGAGGGGAGACAAAGGAGGCTGTAAAGTATGTGGAGAAGTTGATTGGTGTCGAACCGGATGAAGTTGAGTGGAGGCTGTTGCTGGCTCTTTGTCATGAGATTATGGGGGAGTTGGGTACTGCTAAGAAATTGTTTCAGGAAATATTGGAGGAGAGGCCTCTTTTGCTCAGAGCTTTGCATGGTCTAGCATTGGTTATGCACAAAAGGCGTGAAGGTCCAGCAGTTTTTGTGATGCTTGACAAGGCTTTAAAAATTGCACATCGGGAAAAAAGAGTGATCGAGGAGAGGAATATAAGAATTCTGATCGCACAGATGCACGTTGTAAAGGGGCAATTGGAAGAAGGCTTGAATTTATTTCAAGATCTTGTGACTGAGGATCCTCGAGATTTTCGACCTTATCTTTGCCAGGGAATTATCTACAGTCTACTGGATCAAAAGAAGGAAGCTGCAGAAAAGTTTGAAATATATAGGGCTCTTGTGCCTGAAGAAGTTTCTCAAAAGGGATTTCTTGACGATGTTGTGTTGGCAGCCAAAATGAAACCTGGGGAACAGCTTCAGAAGGAGTTTGATGCTGACTTTTCAAGCCAGAAGCAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

363

Amino Acids

41.18

Weight (kDa)

8.18

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39470
fragaria_vesca FvH4_1g22920 FvH4_1g22920
malus_domestica MD15G1331000.v1.1
prunus_persica Prupe.6G169000_v2.0.a1 Prupe.6G169000_v2.0.a1
pyrus_communis pycom15g29420 pycom15g29430
rosa_chinensis RchiOBHm_Chr2g0117361
rosa_laevigata RLG00000018345
rosa_multiflora Rmu_sc0004436.1_g000002
rosa_roxburghii Rroxscaffold_2G00126540
rosa_rugosa Rorug02G0212400 Rorug02G0212400
rosa_samantha Rh2AG267500 Rh2BG279900 Rh2DG274600 Rh2DG293900
rosa_wichuraiana Rw2G021180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AccI GTMKAC 1 cut(s) 913
AclWI GGATC 3 cut(s) 860, 873, 927
AcsI RAATTY 4 cut(s) 241, 448, 786, 838
AcuI CTGAAG 2 cut(s) 993, 1028
AfaI GTAC 2 cut(s) 218, 607
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 7 cut(s) 44, 313, 463, 838, 848, 950, 1071
AjnI CCWGG 2 cut(s) 894, 1030
AluBI AGCT 5 cut(s) 326, 341, 662, 935, 1042
AluI AGCT 5 cut(s) 326, 341, 662, 935, 1042
Alw26I GTCTC 2 cut(s) 377, 491
AlwI GGATC 3 cut(s) 860, 873, 927
Ama87I CYCGRG 1 cut(s) 870
AoxI GGCC 1 cut(s) 644
ApeKI GCWGC 3 cut(s) 323, 935, 1016
ApoI RAATTY 4 cut(s) 241, 448, 786, 838
ArsI GACNNNNNNTTYG 2 cut(s) 873, 905
Asp700I GAANNNNTTC 1 cut(s) 1041
AspS9I GGNCC 2 cut(s) 439, 704
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 2 cut(s) 439, 704
BamHI GGATCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 964
BbsI GAAGAC 1 cut(s) 16
BbvI GCAGC 3 cut(s) 335, 922, 1028
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 896, 1032
BcoDI GTCTC 2 cut(s) 377, 491
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 2 cut(s) 907, 936
BglII AGATCT 1 cut(s) 850
BisI GCNGC 3 cut(s) 324, 936, 1017
BlsI GCNGC 3 cut(s) 325, 937, 1018
Bme1390I CCNGG 2 cut(s) 896, 1032
Bme18I GGWCC 2 cut(s) 439, 704
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 2 cut(s) 439, 704
BmiI GGNNCC 3 cut(s) 440, 441, 867
BmrFI CCNGG 2 cut(s) 896, 1032
BmsI GCATC 3 cut(s) 711, 792, 1048
BpiI GAAGAC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 895, 1031
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 357, 921
BseBI CCWGG 2 cut(s) 896, 1032
BseDI CCNNGG 2 cut(s) 895, 1031
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 670, 852
BseNI ACTGG 2 cut(s) 357, 921
BseRI GAGGAG 5 cut(s) 187, 419, 502, 653, 785
BseXI GCAGC 3 cut(s) 335, 922, 1028
BshFI GGCC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 2 cut(s) 301, 452
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 2 cut(s) 377, 491
BsmFI GGGAC 2 cut(s) 301, 452
BsnI GGCC 1 cut(s) 646
Bso31I GGTCTC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 964
Bsp143I GATC 5 cut(s) 765, 792, 850, 865, 919
BspANI GGCC 1 cut(s) 646
BspCNI CTCAG 2 cut(s) 669, 853
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 3 cut(s) 440, 441, 867
BspMAI CTGCAG 1 cut(s) 940
BspPI GGATC 3 cut(s) 860, 873, 927
BspTNI GGTCTC 1 cut(s) 377
BsrI ACTGG 2 cut(s) 357, 921
BssECI CCNNGG 2 cut(s) 895, 1031
BssMI GATC 5 cut(s) 765, 792, 850, 865, 919
Bst2UI CCWGG 2 cut(s) 896, 1032
Bst4CI ACNGT 3 cut(s) 57, 292, 911
Bst6I CTCTTC 3 cut(s) 45, 175, 392
BstC8I GCNNGC 2 cut(s) 339, 573
BstDEI CTNAG 3 cut(s) 612, 656, 861
BstF5I GGATG 1 cut(s) 553
BstKTI GATC 5 cut(s) 768, 795, 853, 868, 922
BstMAI GTCTC 2 cut(s) 377, 491
BstMBI GATC 5 cut(s) 765, 792, 850, 865, 919
BstMWI GCNNNNNNNGC 4 cut(s) 329, 338, 652, 694
BstNI CCWGG 2 cut(s) 896, 1032
BstSCI CCNGG 2 cut(s) 894, 1030
BstSFI CTRYAG 2 cut(s) 907, 936
BstV1I GCAGC 3 cut(s) 335, 922, 1028
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 850, 865
BstYI RGATCY 2 cut(s) 850, 865
BsuRI GGCC 1 cut(s) 646
BtsCI GGATG 1 cut(s) 553
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 3 cut(s) 53, 332, 364
Cac8I GCNNGC 2 cut(s) 339, 573
CciI TCATGA 1 cut(s) 583
Cfr13I GGNCC 2 cut(s) 439, 704
Csp6I GTAC 2 cut(s) 217, 606
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviAII CATG 2 cut(s) 584, 668
CviQI GTAC 2 cut(s) 217, 606
DdeI CTNAG 3 cut(s) 612, 656, 861
DpnI GATC 5 cut(s) 767, 794, 852, 867, 921
DpnII GATC 5 cut(s) 765, 792, 850, 865, 919
DraI TTTAAA 1 cut(s) 738
Eam1104I CTCTTC 3 cut(s) 45, 175, 392
EarI CTCTTC 3 cut(s) 45, 175, 392
Eco147I AGGCCT 1 cut(s) 646
Eco24I GRGCYC 1 cut(s) 964
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 439, 704
Eco57I CTGAAG 2 cut(s) 993, 1028
Eco88I CYCGRG 1 cut(s) 870
EcoO109I RGGNCCY 1 cut(s) 439
EcoRI GAATTC 1 cut(s) 786
EcoRII CCWGG 2 cut(s) 894, 1030
EcoT38I GRGCYC 1 cut(s) 964
FaeI CATG 2 cut(s) 587, 671
FaqI GGGAC 2 cut(s) 301, 452
FatI CATG 2 cut(s) 583, 667
FblI GTMKAC 1 cut(s) 913
Fnu4HI GCNGC 3 cut(s) 324, 936, 1017
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 1 cut(s) 964
Fsp4HI GCNGC 3 cut(s) 324, 936, 1017
FspBI CTAG 1 cut(s) 674
GluI GCNGC 3 cut(s) 324, 936, 1017
HaeIII GGCC 1 cut(s) 646
HapII CCGG 1 cut(s) 545
Hin1II CATG 2 cut(s) 587, 671
HpaII CCGG 1 cut(s) 545
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 217, 914
Hpy188I TCNGA 4 cut(s) 320, 659, 792, 1047
Hpy188III TCNNGA 6 cut(s) 584, 626, 752, 848, 872, 998
Hpy8I GTNNAC 2 cut(s) 217, 914
HpyAV CCTTC 4 cut(s) 695, 824, 922, 1042
HpyCH4III ACNGT 3 cut(s) 57, 292, 911
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 5 cut(s) 667, 688, 746, 805, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 338, 652, 694
HpyF3I CTNAG 3 cut(s) 612, 656, 861
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 2 cut(s) 587, 671
KflI GGGWCCC 1 cut(s) 439
Kzo9I GATC 5 cut(s) 765, 792, 850, 865, 919
Lsp1109I GCAGC 3 cut(s) 335, 922, 1028
LweI GCATC 3 cut(s) 711, 792, 1048
MaeI CTAG 1 cut(s) 674
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 3 cut(s) 20, 57, 856
MalI GATC 5 cut(s) 767, 794, 852, 867, 921
MboI GATC 5 cut(s) 765, 792, 850, 865, 919
MboII GAAGA 7 cut(s) 21, 32, 162, 409, 422, 839, 986
MfeI CAATTG 1 cut(s) 821
MflI RGATCY 2 cut(s) 850, 865
MhlI GDGCHC 1 cut(s) 964
MroXI GAANNNNTTC 1 cut(s) 1041
MseI TTAA 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 2 cut(s) 896, 1032
MunI CAATTG 1 cut(s) 821
MvaI CCWGG 2 cut(s) 896, 1032
MwoI GCNNNNNNNGC 4 cut(s) 329, 338, 652, 694
NdeII GATC 5 cut(s) 765, 792, 850, 865, 919
NlaIII CATG 2 cut(s) 587, 671
NlaIV GGNNCC 3 cut(s) 440, 441, 867
NmuCI GTSAC 1 cut(s) 856
PaeR7I CTCGAG 1 cut(s) 870
PagI TCATGA 1 cut(s) 583
PceI AGGCCT 1 cut(s) 646
PcsI WCGNNNNNNNCGW 1 cut(s) 877
PdmI GAANNNNTTC 1 cut(s) 1041
PkrI GCNGC 3 cut(s) 325, 937, 1018
PpuMI RGGWCCY 1 cut(s) 439
PsiI TTATAA 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 894, 1030
PspGI CCWGG 2 cut(s) 894, 1030
PspN4I GGNNCC 3 cut(s) 440, 441, 867
PspPI GGNCC 2 cut(s) 439, 704
PspPPI RGGWCCY 1 cut(s) 439
PstI CTGCAG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 850, 865
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 218, 607
RsaNI GTAC 2 cut(s) 217, 606
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 3 cut(s) 324, 936, 1017
Sau3AI GATC 5 cut(s) 765, 792, 850, 865, 919
Sau96I GGNCC 2 cut(s) 439, 704
ScrFI CCNGG 2 cut(s) 896, 1032
SduI GDGCHC 1 cut(s) 964
SfaNI GCATC 3 cut(s) 711, 792, 1048
SfcI CTRYAG 2 cut(s) 907, 936
Sfr274I CTCGAG 1 cut(s) 870
SinI GGWCC 2 cut(s) 439, 704
SlaI CTCGAG 1 cut(s) 870
SmlI CTYRAG 2 cut(s) 25, 870
SmoI CTYRAG 2 cut(s) 25, 870
SseBI AGGCCT 1 cut(s) 646
SspI AATATT 1 cut(s) 633
SspMI CTAG 1 cut(s) 674
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 894, 1030
TaaI ACNGT 3 cut(s) 57, 292, 911
TaiI ACGT 1 cut(s) 810
TaqI TCGA 4 cut(s) 540, 768, 871, 880
TatI WGTACW 1 cut(s) 216
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TscAI CASTG 3 cut(s) 60, 339, 364
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 3 cut(s) 323, 935, 1016
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 2 cut(s) 564, 1040
TspRI CASTG 3 cut(s) 60, 339, 364
VpaK11BI GGWCC 2 cut(s) 439, 704
XapI RAATTY 4 cut(s) 241, 448, 786, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 870
XmiI GTMKAC 1 cut(s) 913
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.