Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012220

Physical Location & Seq

Genomic Coordinates Forward (+)

30600320 .. 30603210

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG274600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGTTCCTTGAGTGGTTTCTCTCTGCAACCCAAAACAGTGTTACCCAACACCAAAATTGTTACCCATAATCTCTGCTACAATCCACTCAAACCCCAATTCCTCAATCCTCACCATACTCAAAAGCCACCTTTTCCCCTATTCAAATTCATCTCTTCTCACTCAAACACCCCCAGACACTCCTTTAAACTCTCAAATGTGTACTCTGCTCACCAACCCCACAAAAAGTTATCAACTTTTTTGGTGGAAAAAGCAGTGGGTTTGGTTATAGGGACAGTTTTCTTTGTTGGGTGTTTCAATATCAGAGCAGCTGTGGCACTACCAGCTCAAACAAGCAGTTCCAGTGAAAGTTTGGAGGAGAAGAGAGAGACCCAGAAGGGGAAGAGTGAGGAAGAAGAAATGAATGAGAGGATTTTGGAGGAGGACCCAAGAAATGTTGAGGCTTTGAAGGTGGTTGTGTACGGGAAAATGAGGAGAGGGAAGACAAAGGAGGCTGTCAAGTATGTGGAGAAGTTGATTGATGTCGAACCGGATGAAGTCGAATGGAGGCTGTTGCTGGCTCTTTGTTATGAGATCATGGGGGAATTGGGTACTGCTAAGAAGTTGTTTAAGGAAATATTGGAGAAGAGGCCTCTTTTGCTCAGAGCTTTGCATGGTCTAGCACTGGTTATGCACAAAAAGCGTGAAGGTCCAGCTGTTTTTGTGATGCTTGACAAGGCTTTAGAAATTGCACGACGGGAAAAAAGAGTGATTGAGGAGAGAAATATAAGAATTCTGATCGCACAGATGCACGTTGTAAAGGGACAATTGGAAGAAGGCTTGAATAAATTTCAGGATCTTGTCAATGATGATCCCCGAGATTTTCGACCTTATCTTTGCCAGGGAATTATCTACAGTCTACTGGATAAAAAGAAGGAAGCTGCAGAACAGTTTGAATTATATAGGGCTCTTGTGCCTGAAGAAGTTTCTCAGAAGGGATTTCTTGACGATGTTGTGTTGGCAGCCAAAACGAAACCTGGGGAACAGCTTCAGAGGGAGTTTGATGCTGAGTTTTCAAGCGAAAAAGGAAACGTCACTGAAGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6

Protein Analysis

362

Amino Acids

41.34

Weight (kDa)

8.45

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39470
fragaria_vesca	FvH4_1g22920 FvH4_1g22920
malus_domestica	MD15G1331000.v1.1
prunus_persica	Prupe.6G169000_v2.0.a1 Prupe.6G169000_v2.0.a1
pyrus_communis	pycom15g29420 pycom15g29430
rosa_chinensis	RchiOBHm_Chr2g0117361
rosa_laevigata	RLG00000018345
rosa_multiflora	Rmu_sc0004436.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126540
rosa_rugosa	Rorug02G0212400 Rorug02G0212400
rosa_samantha	Rh2AG267500 Rh2BG279900 Rh2DG274600 Rh2DG293900
rosa_wichuraiana	Rw2G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	898
AclWI	GGATC	2 cut(s)	843, 845
AcsI	RAATTY	3 cut(s)	146, 771, 827
AcuI	CTGAAG	2 cut(s)	978, 1013
AfaI	GTAC	3 cut(s)	203, 461, 592
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	1083
AgsI	TTSAA	6 cut(s)	145, 298, 448, 823, 935, 1056
AjnI	CCWGG	2 cut(s)	879, 1015
AluBI	AGCT	6 cut(s)	311, 326, 647, 695, 920, 1027
AluI	AGCT	6 cut(s)	311, 326, 647, 695, 920, 1027
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	843, 845
Ama87I	CYCGRG	1 cut(s)	855
AoxI	GGCC	1 cut(s)	629
ApeKI	GCWGC	3 cut(s)	308, 920, 1001
ApoI	RAATTY	3 cut(s)	146, 771, 827
ArsI	GACNNNNNNTTYG	2 cut(s)	858, 890
Asp700I	GAANNNNTTC	1 cut(s)	1026
AspS9I	GGNCC	2 cut(s)	424, 689
AsuHPI	GGTGA	2 cut(s)	104, 203
AvaI	CYCGRG	1 cut(s)	855
AvaII	GGWCC	2 cut(s)	424, 689
BanII	GRGCYC	1 cut(s)	949
BbsI	GAAGAC	1 cut(s)	488
BbvI	GCAGC	3 cut(s)	320, 907, 1013
BciT130I	CCWGG	2 cut(s)	881, 1017
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	2 cut(s)	892, 921
BisI	GCNGC	3 cut(s)	309, 921, 1002
BlsI	GCNGC	3 cut(s)	310, 922, 1003
Bme1390I	CCNGG	2 cut(s)	881, 1017
Bme18I	GGWCC	2 cut(s)	424, 689
BmeT110I	CYCGRG	1 cut(s)	855
BmgT120I	GGNCC	2 cut(s)	424, 689
BmiI	GGNNCC	2 cut(s)	7, 426
BmrFI	CCNGG	2 cut(s)	881, 1017
BmsI	GCATC	3 cut(s)	696, 777, 1033
BpiI	GAAGAC	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	880, 1016
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	3 cut(s)	342, 669, 906
BseBI	CCWGG	2 cut(s)	881, 1017
BseDI	CCNNGG	2 cut(s)	880, 1016
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	655, 983, 1038
BseNI	ACTGG	3 cut(s)	342, 669, 906
BseRI	GAGGAG	4 cut(s)	371, 434, 487, 770
BseXI	GCAGC	3 cut(s)	320, 907, 1013
BshFI	GGCC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	855
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	2 cut(s)	286, 816
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	286, 816
BsnI	GGCC	1 cut(s)	631
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	855
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp143I	GATC	4 cut(s)	573, 777, 835, 850
BspANI	GGCC	1 cut(s)	631
BspCNI	CTCAG	3 cut(s)	654, 982, 1039
BspLI	GGNNCC	2 cut(s)	7, 426
BspMAI	CTGCAG	1 cut(s)	925
BspPI	GGATC	2 cut(s)	843, 845
BspTNI	GGTCTC	1 cut(s)	362
BsrI	ACTGG	3 cut(s)	342, 669, 906
BssECI	CCNNGG	2 cut(s)	880, 1016
BssMI	GATC	4 cut(s)	573, 777, 835, 850
Bst2UI	CCWGG	2 cut(s)	881, 1017
Bst4CI	ACNGT	4 cut(s)	40, 277, 896, 930
Bst6I	CTCTTC	4 cut(s)	160, 356, 377, 620
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	4 cut(s)	597, 641, 969, 1047
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	4 cut(s)	576, 780, 838, 853
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	4 cut(s)	573, 777, 835, 850
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 323, 637, 679
BstNI	CCWGG	2 cut(s)	881, 1017
BstNSI	RCATGY	1 cut(s)	1087
BstSCI	CCNGG	2 cut(s)	879, 1015
BstSFI	CTRYAG	2 cut(s)	892, 921
BstV1I	GCAGC	3 cut(s)	320, 907, 1013
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
BsuRI	GGCC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	5 cut(s)	45, 261, 349, 662, 1074
Cac8I	GCNNGC	1 cut(s)	558
Cfr13I	GGNCC	2 cut(s)	424, 689
Csp6I	GTAC	3 cut(s)	202, 460, 591
CviAII	CATG	3 cut(s)	577, 653, 1084
CviQI	GTAC	3 cut(s)	202, 460, 591
DdeI	CTNAG	4 cut(s)	597, 641, 969, 1047
DpnI	GATC	4 cut(s)	575, 779, 837, 852
DpnII	GATC	4 cut(s)	573, 777, 835, 850
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	4 cut(s)	160, 356, 377, 620
EarI	CTCTTC	4 cut(s)	160, 356, 377, 620
Eco147I	AGGCCT	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	949
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	424, 689
Eco57I	CTGAAG	2 cut(s)	978, 1013
Eco88I	CYCGRG	1 cut(s)	855
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	771
EcoRII	CCWGG	2 cut(s)	879, 1015
EcoT38I	GRGCYC	1 cut(s)	949
FaeI	CATG	3 cut(s)	580, 656, 1087
FaqI	GGGAC	2 cut(s)	286, 816
FatI	CATG	3 cut(s)	576, 652, 1083
FblI	GTMKAC	1 cut(s)	898
Fnu4HI	GCNGC	3 cut(s)	309, 921, 1002
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	949
Fsp4HI	GCNGC	3 cut(s)	309, 921, 1002
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	3 cut(s)	309, 921, 1002
HaeIII	GGCC	1 cut(s)	631
HapII	CCGG	1 cut(s)	530
Hin1II	CATG	3 cut(s)	580, 656, 1087
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	2 cut(s)	104, 203
Hpy166II	GTNNAC	3 cut(s)	202, 460, 899
Hpy188I	TCNGA	5 cut(s)	305, 644, 777, 972, 1032
Hpy188III	TCNNGA	2 cut(s)	833, 983
Hpy8I	GTNNAC	3 cut(s)	202, 460, 899
Hpy99I	CGWCG	1 cut(s)	738
HpyAV	CCTTC	6 cut(s)	370, 442, 680, 809, 907, 967
HpyCH4III	ACNGT	4 cut(s)	40, 277, 896, 930
HpyCH4IV	ACGT	2 cut(s)	792, 1071
HpyCH4V	TGCA	6 cut(s)	28, 652, 673, 731, 790, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 323, 637, 679
HpyF3I	CTNAG	4 cut(s)	597, 641, 969, 1047
HpySE526I	ACGT	2 cut(s)	792, 1071
Hsp92II	CATG	3 cut(s)	580, 656, 1087
Kzo9I	GATC	4 cut(s)	573, 777, 835, 850
Lsp1109I	GCAGC	3 cut(s)	320, 907, 1013
LweI	GCATC	3 cut(s)	696, 777, 1033
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	2 cut(s)	792, 1071
MaeIII	GTNAC	3 cut(s)	42, 61, 1072
MalI	GATC	4 cut(s)	575, 779, 837, 852
MboI	GATC	4 cut(s)	573, 777, 835, 850
MboII	GAAGA	9 cut(s)	147, 373, 394, 404, 407, 493, 637, 824, 971
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	1 cut(s)	949
MroXI	GAANNNNTTC	1 cut(s)	1026
MseI	TTAA	2 cut(s)	186, 609
MspA1I	CMGCKG	2 cut(s)	311, 695
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	881, 1017
MunI	CAATTG	1 cut(s)	806
MvaI	CCWGG	2 cut(s)	881, 1017
MwoI	GCNNNNNNNGC	4 cut(s)	314, 323, 637, 679
NdeII	GATC	4 cut(s)	573, 777, 835, 850
NlaIII	CATG	3 cut(s)	580, 656, 1087
NlaIV	GGNNCC	2 cut(s)	7, 426
NmuCI	GTSAC	1 cut(s)	1072
NspI	RCATGY	1 cut(s)	1087
PceI	AGGCCT	1 cut(s)	631
PciI	ACATGT	1 cut(s)	1083
PdmI	GAANNNNTTC	1 cut(s)	1026
PkrI	GCNGC	3 cut(s)	310, 922, 1003
PpuMI	RGGWCCY	1 cut(s)	424
PscI	ACATGT	1 cut(s)	1083
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	879, 1015
PspGI	CCWGG	2 cut(s)	879, 1015
PspN4I	GGNNCC	2 cut(s)	7, 426
PspPI	GGNCC	2 cut(s)	424, 689
PspPPI	RGGWCCY	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	925
PsuI	RGATCY	1 cut(s)	835
PvuII	CAGCTG	2 cut(s)	311, 695
RsaI	GTAC	3 cut(s)	203, 461, 592
RsaNI	GTAC	3 cut(s)	202, 460, 591
SaqAI	TTAA	2 cut(s)	186, 609
SatI	GCNGC	3 cut(s)	309, 921, 1002
Sau3AI	GATC	4 cut(s)	573, 777, 835, 850
Sau96I	GGNCC	2 cut(s)	424, 689
ScrFI	CCNGG	2 cut(s)	881, 1017
SduI	GDGCHC	1 cut(s)	949
SfaNI	GCATC	3 cut(s)	696, 777, 1033
SfcI	CTRYAG	2 cut(s)	892, 921
SinI	GGWCC	2 cut(s)	424, 689
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SseBI	AGGCCT	1 cut(s)	631
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	1 cut(s)	659
StuI	AGGCCT	1 cut(s)	631
StyD4I	CCNGG	2 cut(s)	879, 1015
TaaI	ACNGT	4 cut(s)	40, 277, 896, 930
TaiI	ACGT	2 cut(s)	795, 1074
TaqI	TCGA	3 cut(s)	525, 540, 865
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	2 cut(s)	186, 609
Tru9I	TTAA	2 cut(s)	186, 609
TscAI	CASTG	5 cut(s)	45, 261, 349, 669, 1081
TseFI	GTSAC	1 cut(s)	1072
TseI	GCWGC	3 cut(s)	308, 920, 1001
Tsp45I	GTSAC	1 cut(s)	1072
TspDTI	ATGAA	3 cut(s)	139, 416, 549
TspRI	CASTG	5 cut(s)	45, 261, 349, 669, 1081
VpaK11BI	GGWCC	2 cut(s)	424, 689
XapI	RAATTY	3 cut(s)	146, 771, 827
XceI	RCATGY	1 cut(s)	1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	898
XmnI	GAANNNNTTC	1 cut(s)	1026
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.