Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012220

Physical Location & Seq

Genomic Coordinates Reverse (-)

36515621 .. 36519114

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1331000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGTTTGGGGGAGTGGTGCTGCGAGTGCGAGTGCTTGCTCTCTTCCTCTTCTTGAAGTTGAAATTCTGAGCCACAATCGCAAGCCCTTATTCCTCCACTCCGATTCTCACCCTCTTACACTCAGACGGCGACGCTCCTCAACTCTCACCAATTATTCCACACCCTCTTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCTAAACTTCAACTTTCACTTTGTTTCCAACCCTACAAAACCAAAGATTCATTAACAACTTTGCCGCAAAAAGCACTTGTGGGTTTTGTTGTTCTTGGGTCAGTTTTCTTTGCTGGGTTTGGCTGTTTCAAATGGGCAGCTGTGTCACGAGCTGCTCAAACTACTCCAAATCTGGAGGACAAGATAGAGACTACCCACCAAGGGAAAACTGAGGAGGAGGAGGAGGAGCAAATGTACCACAAAATTCTGGTGGACGACCCAAAAAATGTTGGTGCTTTGAAGGTTGTTTTGTATGGGAAACTGAGGAGAGGGAAGGCAGAGGAGGCTGTCAGCTATGTGGAGAGGTTGATTGAGCTTGAGCCGCACGAGCTCGAATGGAGGCTAATGCTGCCTCTTTGTTATGAGATCATGGGCCAACTCACTTGTGCTAAAACATTGTATCAGCAAATCTTGGAGGACAGGCCTCTTTTGCTCAGAGCTTTGCATGGTCTGGCATTGGTTATGCACAAAAACCATGAAGGTCCAGCGGTTTTTTCAATGCTTAATAATGCTTTAGAAATTGCGCGGCATGAAAAAAGAGTTGTTGAGGAGAGGAATATAAGAATTCTGATTGCACAGATGCATGTTATAATGGGAGAACTGGAAGAAGGCTTGAATAAATTCCATGATCTGGTCAATGCAGATCCACGAGATTTTCGGCCTTATCTTTGTCAGGGAATTATCTACAGTCTACTAGATCAGAAAAAGGAAGCTGCAGAACAGTTTGAAACATATCGGGCTTTAGTGCCTGAAGAATCTCCACAAAGGGGATTTCTTGATGATGTTGTGTTGGCAGCAGCCAACAACAAATCCGGGGAACAGTTTAAGAAGGATTTTCATAAGGAGTTCTCATACCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6

Protein Analysis

367

Amino Acids

41.51

Weight (kDa)

6.68

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39470
fragaria_vesca	FvH4_1g22920 FvH4_1g22920
malus_domestica	MD15G1331000.v1.1
prunus_persica	Prupe.6G169000_v2.0.a1 Prupe.6G169000_v2.0.a1
pyrus_communis	pycom15g29420 pycom15g29430
rosa_chinensis	RchiOBHm_Chr2g0117361
rosa_laevigata	RLG00000018345
rosa_multiflora	Rmu_sc0004436.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126540
rosa_rugosa	Rorug02G0212400 Rorug02G0212400
rosa_samantha	Rh2AG267500 Rh2BG279900 Rh2DG274600 Rh2DG293900
rosa_wichuraiana	Rw2G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AccB7I	CCANNNNNTGG	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	928
AccII	CGCG	1 cut(s)	763
AciI	CCGC	4 cut(s)	263, 560, 725, 763
AclWI	GGATC	1 cut(s)	875
AcsI	RAATTY	4 cut(s)	63, 441, 801, 857
AcuI	CTGAAG	1 cut(s)	1008
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	399, 868, 1004
AgsI	TTSAA	8 cut(s)	56, 62, 209, 328, 478, 735, 853, 965
AluBI	AGCT	7 cut(s)	338, 350, 531, 553, 568, 677, 950
AluI	AGCT	7 cut(s)	338, 350, 531, 553, 568, 677, 950
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	875
AoxI	GGCC	3 cut(s)	610, 659, 896
ApeKI	GCWGC	7 cut(s)	20, 335, 350, 586, 950, 1031, 1034
ApoI	RAATTY	4 cut(s)	63, 441, 801, 857
Asp700I	GAANNNNTTC	1 cut(s)	857
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	2 cut(s)	610, 719
AsuC2I	CCSGG	1 cut(s)	1051
AsuHPI	GGTGA	2 cut(s)	101, 139
AvaII	GGWCC	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	570
BauI	CACGAG	3 cut(s)	345, 563, 885
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	7 cut(s)	7, 337, 347, 573, 937, 1043, 1046
BceAI	ACGGC	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	1051
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	932
BfmI	CTRYAG	2 cut(s)	922, 951
Bme1390I	CCNGG	1 cut(s)	1051
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	610, 719
BmrFI	CCNGG	1 cut(s)	1051
BmsI	GCATC	1 cut(s)	807
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	1051
BsaJI	CCNNGG	2 cut(s)	397, 1050
BsaWI	WCCGGW	1 cut(s)	1092
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 868, 1004
Bse1I	ACTGG	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	397, 1050
BseLI	CCNNNNNNNGG	3 cut(s)	399, 868, 1004
BseMII	CTCAG	5 cut(s)	59, 136, 399, 491, 685
BseNI	ACTGG	1 cut(s)	843
BseXI	GCAGC	7 cut(s)	7, 337, 347, 573, 937, 1043, 1046
BseYI	CCCAGC	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	763
BshFI	GGCC	3 cut(s)	612, 661, 898
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	2 cut(s)	1050, 1093
BslI	CCNNNNNNNGG	3 cut(s)	399, 868, 1004
BsmAI	GTCTC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	612, 661, 898
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	603, 865, 880, 934
BspACI	CCGC	4 cut(s)	263, 560, 725, 763
BspANI	GGCC	3 cut(s)	612, 661, 898
BspCNI	CTCAG	5 cut(s)	60, 135, 400, 492, 684
BspFNI	CGCG	1 cut(s)	763
BspMAI	CTGCAG	1 cut(s)	955
BspPI	GGATC	1 cut(s)	875
BsrI	ACTGG	1 cut(s)	843
BssECI	CCNNGG	2 cut(s)	397, 1050
BssMI	GATC	4 cut(s)	603, 865, 880, 934
BssSI	CACGAG	3 cut(s)	345, 563, 885
BssT1I	CCWWGG	1 cut(s)	397
Bst2BI	CACGAG	3 cut(s)	345, 563, 885
Bst4CI	ACNGT	3 cut(s)	926, 960, 1059
Bst6I	CTCTTC	3 cut(s)	48, 54, 172
BstC8I	GCNNGC	2 cut(s)	37, 83
BstDEI	CTNAG	5 cut(s)	68, 122, 408, 500, 671
BstFNI	CGCG	1 cut(s)	763
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	4 cut(s)	606, 868, 883, 937
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	4 cut(s)	603, 865, 880, 934
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 78, 521, 559, 565, 586, 667
BstNSI	RCATGY	1 cut(s)	824
BstSCI	CCNGG	1 cut(s)	1049
BstSFI	CTRYAG	2 cut(s)	922, 951
BstUI	CGCG	1 cut(s)	763
BstV1I	GCAGC	7 cut(s)	7, 337, 347, 573, 937, 1043, 1046
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuRI	GGCC	3 cut(s)	612, 661, 898
Cac8I	GCNNGC	2 cut(s)	37, 83
CfoI	GCGC	1 cut(s)	763
Cfr13I	GGNCC	2 cut(s)	610, 719
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	6 cut(s)	607, 683, 713, 767, 821, 863
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	5 cut(s)	68, 122, 408, 500, 671
DpnI	GATC	4 cut(s)	605, 867, 882, 936
DpnII	GATC	4 cut(s)	603, 865, 880, 934
Eam1104I	CTCTTC	3 cut(s)	48, 54, 172
EarI	CTCTTC	3 cut(s)	48, 54, 172
Ecl136II	GAGCTC	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	397
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	719
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	1008
EcoICRI	GAGCTC	1 cut(s)	568
EcoRI	GAATTC	1 cut(s)	801
EcoT14I	CCWWGG	1 cut(s)	397
EcoT22I	ATGCAT	1 cut(s)	822
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	6 cut(s)	610, 686, 716, 770, 824, 866
FatI	CATG	6 cut(s)	606, 682, 712, 766, 820, 862
FblI	GTMKAC	1 cut(s)	928
FriOI	GRGCYC	1 cut(s)	570
FspBI	CTAG	1 cut(s)	932
GlaI	GCGC	1 cut(s)	762
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	612, 661, 898
HapII	CCGG	2 cut(s)	1050, 1093
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	6 cut(s)	610, 686, 716, 770, 824, 866
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HinfI	GANTC	3 cut(s)	104, 245, 992
HpaII	CCGG	2 cut(s)	1050, 1093
HphI	GGTGA	2 cut(s)	101, 139
Hpy166II	GTNNAC	2 cut(s)	451, 929
Hpy188I	TCNGA	6 cut(s)	69, 103, 125, 674, 807, 939
Hpy188III	TCNNGA	4 cut(s)	53, 345, 371, 1013
Hpy8I	GTNNAC	2 cut(s)	451, 929
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	6 cut(s)	184, 472, 505, 710, 839, 1060
HpyCH4III	ACNGT	3 cut(s)	926, 960, 1059
HpyCH4V	TGCA	6 cut(s)	682, 703, 812, 820, 878, 953
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 78, 521, 559, 565, 586, 667
HpyF3I	CTNAG	5 cut(s)	68, 122, 408, 500, 671
Hsp92II	CATG	6 cut(s)	610, 686, 716, 770, 824, 866
HspAI	GCGC	1 cut(s)	761
Kzo9I	GATC	4 cut(s)	603, 865, 880, 934
LmnI	GCTCC	2 cut(s)	140, 424
Lsp1109I	GCAGC	7 cut(s)	7, 337, 347, 573, 937, 1043, 1046
LweI	GCATC	1 cut(s)	807
MaeI	CTAG	1 cut(s)	932
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	4 cut(s)	605, 867, 882, 936
MboI	GATC	4 cut(s)	603, 865, 880, 934
MboII	GAAGA	5 cut(s)	35, 41, 159, 854, 1001
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	7 cut(s)	63, 151, 441, 756, 801, 857, 915
MmeI	TCCRAC	1 cut(s)	250
Mph1103I	ATGCAT	1 cut(s)	822
MroXI	GAANNNNTTC	1 cut(s)	857
MseI	TTAA	3 cut(s)	251, 741, 1062
MspA1I	CMGCKG	2 cut(s)	338, 725
MspI	CCGG	2 cut(s)	1050, 1093
MspR9I	CCNGG	1 cut(s)	1051
MvnI	CGCG	1 cut(s)	763
MwoI	GCNNNNNNNGC	7 cut(s)	26, 78, 521, 559, 565, 586, 667
NciI	CCSGG	1 cut(s)	1051
NdeII	GATC	4 cut(s)	603, 865, 880, 934
NlaIII	CATG	6 cut(s)	610, 686, 716, 770, 824, 866
NmuCI	GTSAC	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	822
NspI	RCATGY	1 cut(s)	824
PceI	AGGCCT	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	857
PfeI	GAWTC	3 cut(s)	104, 245, 992
PflMI	CCANNNNNTGG	1 cut(s)	868
PsiI	TTATAA	1 cut(s)	827
Psp124BI	GAGCTC	1 cut(s)	570
PspFI	CCCAGC	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	610, 719
PstI	CTGCAG	1 cut(s)	955
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	251, 741, 1062
Sau3AI	GATC	4 cut(s)	603, 865, 880, 934
Sau96I	GGNCC	2 cut(s)	610, 719
ScrFI	CCNGG	1 cut(s)	1051
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	1 cut(s)	807
SfcI	CTRYAG	2 cut(s)	922, 951
SinI	GGWCC	1 cut(s)	719
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	7 cut(s)	63, 151, 441, 756, 801, 857, 915
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	4 cut(s)	263, 560, 725, 763
SspMI	CTAG	1 cut(s)	932
SstI	GAGCTC	1 cut(s)	570
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	1049
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	3 cut(s)	926, 960, 1059
TaqI	TCGA	1 cut(s)	570
TasI	AATT	7 cut(s)	63, 151, 441, 756, 801, 857, 915
TauI	GCSGC	3 cut(s)	265, 562, 766
TfiI	GAWTC	3 cut(s)	104, 245, 992
Tru1I	TTAA	3 cut(s)	251, 741, 1062
Tru9I	TTAA	3 cut(s)	251, 741, 1062
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	7 cut(s)	20, 335, 350, 586, 950, 1031, 1034
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	4 cut(s)	237, 729, 783, 1064
Van91I	CCANNNNNTGG	1 cut(s)	868
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	4 cut(s)	63, 441, 801, 857
XceI	RCATGY	1 cut(s)	824
XmiI	GTMKAC	1 cut(s)	928
XmnI	GAANNNNTTC	1 cut(s)	857
XspI	CTAG	1 cut(s)	932
Zsp2I	ATGCAT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.