RLG00000018345

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012220
Physical Location & Seq
Forward (+)
28572817 .. 28576401
3585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018345

Sequence Viewer

Length: 1170 bp
ATGTTGCTTCTCCAATTGACATCGCAGACCGGAAAGCCCAGATCGCCGAAATGGACCAGAAGCCCGGTTGTCGAATCGACTGTGCTCGTCCCCGTCCGATCTCAACAGAGTCCTCGATCTGCAGCATCTGAGTCGTCGCCTTCGGCCTATGCGGCGTCGTCCGGCCTCTGCGGCGTCATTCGGCCTCTGTGGCGTCATCTCCGGCCTATGCGGCGTCGTCCGGGCTCTGTGGAGCGCGGCAACTGGCACGACACCCCCAGACACTTCTCTAAACTCTCAAATGTGTACTCTGCTCACCAACCCCACAAAAAGTTATCAACTTGTTTGGTGGAAAAAGTAGTGGGTTTGGTTATAGGGACAGTTTTCTTTGTTGGGTGTTTCAATATCAGAGCAGCTGTAGCACTACCAGCTCAAACAAGCAGTTCCAGTGAAAATTTGGAGGAGAAGAGAGAGACCCAGAAAGGGAAGAGTGAGGAAGAAGAAATGTATGAGAGGATTTTGGAGGAGGACCCAAGAAATGTTGAGGCTTTGAAGGTGGTTGTGTATGGGAAAATGAGGAGAGGGAAGACAAAGGAGGCTGTCAAGTATGTGGAGAAGTTGATTGATGTCGAACCGGATGAAGTCGAATGGAGGCTGTTGCTGGCTCTTTGTCATGAGATCATGGGGGAATTGGGTACAGCTAAGAAGTTGTTTAAGGAAATATTGGAGAAGAGGCCTCTTTTGCTCAGAGCTTTGCATGGTCTAGCACTGGTTATGCACAAAAAGCGTGAAGGTCCAGCTGTTTTTGTGATGCTTGACAAGGCTTTAGAAATTGCAAGTCGGGAAAAAAGAGTGATTGAGGAGAGAAATATAAGAATTCTTATCGCACAGATGCACGTTGTAAAGGGACAATTGGAAGAAGGCTTGAATAAATTTCAGGATCTTGTCAATGATGATCCCCGAGATTTTCGACCTTATCTTTGCCAGGGAATTATCTACAGTCTACTGGATAAAAAGAAGGAAGCTGCAGAACAGTTTGAATTATATAGGTCTCTTGTGCCAGAAGAAGTTTCTCAGAGGGGATTTCTTGATGATGTTGTGTTGGCAGCCAAAACAAAACCTGGACAGCTTCAGAGGGAGTTTGATGCTGAGTTTTCAAGCCAGAAAGGAAACGCCACTGAAGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6

Protein Analysis

390

Amino Acids

44.19

Weight (kDa)

9.09

Isoelectric Point (pI)

61.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39470
fragaria_vesca FvH4_1g22920 FvH4_1g22920
malus_domestica MD15G1331000.v1.1
prunus_persica Prupe.6G169000_v2.0.a1 Prupe.6G169000_v2.0.a1
pyrus_communis pycom15g29420 pycom15g29430
rosa_chinensis RchiOBHm_Chr2g0117361
rosa_laevigata RLG00000018345
rosa_multiflora Rmu_sc0004436.1_g000002
rosa_roxburghii Rroxscaffold_2G00126540
rosa_rugosa Rorug02G0212400 Rorug02G0212400
rosa_samantha Rh2AG267500 Rh2BG279900 Rh2DG274600 Rh2DG293900
rosa_wichuraiana Rw2G021180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 982
AccII CGCG 1 cut(s) 237
AciI CCGC 4 cut(s) 152, 171, 211, 237
AclWI GGATC 2 cut(s) 927, 929
AcsI RAATTY 3 cut(s) 433, 855, 911
AcuI CTGAAG 1 cut(s) 1094
AcyI GRCGYC 4 cut(s) 155, 174, 193, 214
AfaI GTAC 2 cut(s) 287, 676
AfiI CCNNNNNNNGG 1 cut(s) 462
AflIII ACRYGT 1 cut(s) 1164
AgsI TTSAA 5 cut(s) 382, 532, 907, 1019, 1137
AjnI CCWGG 2 cut(s) 963, 1099
AluBI AGCT 7 cut(s) 395, 410, 680, 731, 779, 1004, 1108
AluI AGCT 7 cut(s) 395, 410, 680, 731, 779, 1004, 1108
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 446, 1035
AlwI GGATC 2 cut(s) 927, 929
AlwNI CAGNNNCTG 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 939
AoxI GGCC 5 cut(s) 144, 163, 182, 203, 713
ApeKI GCWGC 4 cut(s) 122, 392, 1004, 1085
ApoI RAATTY 3 cut(s) 433, 855, 911
ArsI GACNNNNNNTTYG 2 cut(s) 942, 974
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 3 cut(s) 54, 508, 773
AsuC2I CCSGG 2 cut(s) 65, 222
AsuHPI GGTGA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 939
AvaII GGWCC 3 cut(s) 54, 508, 773
BanII GRGCYC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 134, 404, 991, 1097
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BciT130I CCWGG 2 cut(s) 965, 1101
BcnI CCSGG 2 cut(s) 65, 222
BcoDI GTCTC 2 cut(s) 446, 1035
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 4 cut(s) 120, 396, 976, 1005
BglI GCCNNNNNGGC 4 cut(s) 152, 171, 190, 211
BisI GCNGC 8 cut(s) 123, 153, 172, 212, 238, 393, 1005, 1086
BlsI GCNGC 8 cut(s) 124, 154, 173, 213, 239, 394, 1006, 1087
Bme1390I CCNGG 4 cut(s) 65, 222, 965, 1101
Bme18I GGWCC 3 cut(s) 54, 508, 773
BmeT110I CYCGRG 1 cut(s) 939
BmgT120I GGNCC 3 cut(s) 54, 508, 773
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 4 cut(s) 65, 222, 965, 1101
BmsI GCATC 4 cut(s) 134, 780, 861, 1114
BpiI GAAGAC 1 cut(s) 572
BpuMI CCSGG 2 cut(s) 65, 222
BsaHI GRCGYC 4 cut(s) 155, 174, 193, 214
BsaI GGTCTC 2 cut(s) 446, 1035
BsaJI CCNNGG 1 cut(s) 964
BsaWI WCCGGW 2 cut(s) 29, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse1I ACTGG 4 cut(s) 248, 426, 753, 990
BseBI CCWGG 2 cut(s) 965, 1101
BseDI CCNNGG 1 cut(s) 964
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMII CTCAG 4 cut(s) 120, 739, 1067, 1119
BseNI ACTGG 4 cut(s) 248, 426, 753, 990
BseRI GAGGAG 4 cut(s) 455, 518, 571, 854
BseXI GCAGC 4 cut(s) 134, 404, 991, 1097
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 5 cut(s) 146, 165, 184, 205, 715
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 939
BsiSI CCGG 6 cut(s) 30, 65, 162, 202, 221, 614
BslFI GGGAC 3 cut(s) 74, 370, 900
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 2 cut(s) 446, 1035
BsmFI GGGAC 3 cut(s) 74, 370, 900
BsnI GGCC 5 cut(s) 146, 165, 184, 205, 715
Bso31I GGTCTC 2 cut(s) 446, 1035
BsoBI CYCGRG 1 cut(s) 939
Bsp1286I GDGCHC 2 cut(s) 87, 227
Bsp143I GATC 6 cut(s) 41, 98, 116, 657, 919, 934
BspACI CCGC 4 cut(s) 152, 171, 211, 237
BspANI GGCC 5 cut(s) 146, 165, 184, 205, 715
BspCNI CTCAG 4 cut(s) 121, 738, 1066, 1120
BspFNI CGCG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 510
BspMAI CTGCAG 2 cut(s) 124, 1009
BspPI GGATC 2 cut(s) 927, 929
BspTNI GGTCTC 2 cut(s) 446, 1035
BsrI ACTGG 4 cut(s) 248, 426, 753, 990
BssECI CCNNGG 1 cut(s) 964
BssMI GATC 6 cut(s) 41, 98, 116, 657, 919, 934
BssNI GRCGYC 4 cut(s) 155, 174, 193, 214
Bst2UI CCWGG 2 cut(s) 965, 1101
Bst4CI ACNGT 4 cut(s) 82, 361, 980, 1014
Bst6I CTCTTC 3 cut(s) 440, 461, 704
BstACI GRCGYC 4 cut(s) 155, 174, 193, 214
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 5 cut(s) 129, 681, 725, 1053, 1128
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 6 cut(s) 44, 101, 119, 660, 922, 937
BstMAI GTCTC 2 cut(s) 446, 1035
BstMBI GATC 6 cut(s) 41, 98, 116, 657, 919, 934
BstMWI GCNNNNNNNGC 9 cut(s) 43, 152, 171, 190, 211, 398, 407, 721, 763
BstNI CCWGG 2 cut(s) 965, 1101
BstNSI RCATGY 1 cut(s) 1168
BstSCI CCNGG 4 cut(s) 63, 220, 963, 1099
BstSFI CTRYAG 4 cut(s) 120, 396, 976, 1005
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 4 cut(s) 134, 404, 991, 1097
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
BsuRI GGCC 5 cut(s) 146, 165, 184, 205, 715
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 3 cut(s) 433, 746, 1155
Cac8I GCNNGC 1 cut(s) 642
CaiI CAGNNNCTG 1 cut(s) 128
CciI TCATGA 1 cut(s) 652
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 3 cut(s) 54, 508, 773
CseI GACGC 4 cut(s) 144, 163, 182, 203
Csp6I GTAC 2 cut(s) 286, 675
CviAII CATG 4 cut(s) 653, 661, 737, 1165
CviQI GTAC 2 cut(s) 286, 675
DdeI CTNAG 5 cut(s) 129, 681, 725, 1053, 1128
DpnI GATC 6 cut(s) 43, 100, 118, 659, 921, 936
DpnII GATC 6 cut(s) 41, 98, 116, 657, 919, 934
Eam1104I CTCTTC 3 cut(s) 440, 461, 704
EarI CTCTTC 3 cut(s) 440, 461, 704
Eco147I AGGCCT 1 cut(s) 715
Eco24I GRGCYC 1 cut(s) 227
Eco31I GGTCTC 2 cut(s) 446, 1035
Eco47I GGWCC 3 cut(s) 54, 508, 773
Eco57I CTGAAG 1 cut(s) 1094
Eco88I CYCGRG 1 cut(s) 939
EcoO109I RGGNCCY 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 855
EcoRII CCWGG 2 cut(s) 963, 1099
EcoT38I GRGCYC 1 cut(s) 227
FaeI CATG 4 cut(s) 656, 664, 740, 1168
FaqI GGGAC 3 cut(s) 74, 370, 900
FatI CATG 4 cut(s) 652, 660, 736, 1164
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 8 cut(s) 123, 153, 172, 212, 238, 393, 1005, 1086
FokI GGATG 1 cut(s) 629
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 8 cut(s) 123, 153, 172, 212, 238, 393, 1005, 1086
FspBI CTAG 1 cut(s) 743
GlaI GCGC 1 cut(s) 236
GluI GCNGC 8 cut(s) 123, 153, 172, 212, 238, 393, 1005, 1086
HaeIII GGCC 5 cut(s) 146, 165, 184, 205, 715
HapII CCGG 6 cut(s) 30, 65, 162, 202, 221, 614
HgaI GACGC 4 cut(s) 144, 163, 182, 203
HhaI GCGC 1 cut(s) 237
Hin1I GRCGYC 4 cut(s) 155, 174, 193, 214
Hin1II CATG 4 cut(s) 656, 664, 740, 1168
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 3 cut(s) 74, 109, 131
HpaII CCGG 6 cut(s) 30, 65, 162, 202, 221, 614
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 286, 983
Hpy188I TCNGA 6 cut(s) 98, 130, 389, 728, 1056, 1113
Hpy188III TCNNGA 4 cut(s) 653, 821, 917, 1067
Hpy8I GTNNAC 2 cut(s) 286, 983
Hpy99I CGWCG 3 cut(s) 139, 160, 219
HpyAV CCTTC 5 cut(s) 150, 526, 764, 893, 991
HpyCH4III ACNGT 4 cut(s) 82, 361, 980, 1014
HpyCH4IV ACGT 1 cut(s) 876
HpyCH4V TGCA 6 cut(s) 122, 736, 757, 815, 874, 1007
HpyF10VI GCNNNNNNNGC 9 cut(s) 43, 152, 171, 190, 211, 398, 407, 721, 763
HpyF3I CTNAG 5 cut(s) 129, 681, 725, 1053, 1128
HpySE526I ACGT 1 cut(s) 876
Hsp92I GRCGYC 4 cut(s) 155, 174, 193, 214
Hsp92II CATG 4 cut(s) 656, 664, 740, 1168
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 6 cut(s) 41, 98, 116, 657, 919, 934
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 4 cut(s) 134, 404, 991, 1097
LweI GCATC 4 cut(s) 134, 780, 861, 1114
MaeI CTAG 1 cut(s) 743
MaeII ACGT 1 cut(s) 876
MalI GATC 6 cut(s) 43, 100, 118, 659, 921, 936
MboI GATC 6 cut(s) 41, 98, 116, 657, 919, 934
MboII GAAGA 8 cut(s) 457, 478, 488, 491, 577, 721, 908, 1055
MfeI CAATTG 2 cut(s) 14, 890
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 2 cut(s) 87, 227
MluCI AATT 9 cut(s) 14, 433, 668, 810, 855, 890, 911, 969, 1019
MlyI GAGTC 2 cut(s) 118, 140
MseI TTAA 1 cut(s) 693
MspA1I CMGCKG 2 cut(s) 395, 779
MspI CCGG 6 cut(s) 30, 65, 162, 202, 221, 614
MspR9I CCNGG 4 cut(s) 65, 222, 965, 1101
MunI CAATTG 2 cut(s) 14, 890
MvaI CCWGG 2 cut(s) 965, 1101
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 9 cut(s) 43, 152, 171, 190, 211, 398, 407, 721, 763
NciI CCSGG 2 cut(s) 65, 222
NdeII GATC 6 cut(s) 41, 98, 116, 657, 919, 934
NlaIII CATG 4 cut(s) 656, 664, 740, 1168
NlaIV GGNNCC 1 cut(s) 510
NspI RCATGY 1 cut(s) 1168
PagI TCATGA 1 cut(s) 652
PceI AGGCCT 1 cut(s) 715
PciI ACATGT 1 cut(s) 1164
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 8 cut(s) 124, 154, 173, 213, 239, 394, 1006, 1087
PleI GAGTC 2 cut(s) 117, 139
PpsI GAGTC 2 cut(s) 117, 139
PpuMI RGGWCCY 1 cut(s) 508
PscI ACATGT 1 cut(s) 1164
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 963, 1099
PspGI CCWGG 2 cut(s) 963, 1099
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 3 cut(s) 54, 508, 773
PspPPI RGGWCCY 1 cut(s) 508
PstI CTGCAG 2 cut(s) 124, 1009
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 919
PvuII CAGCTG 2 cut(s) 395, 779
RsaI GTAC 2 cut(s) 287, 676
RsaNI GTAC 2 cut(s) 286, 675
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 8 cut(s) 123, 153, 172, 212, 238, 393, 1005, 1086
Sau3AI GATC 6 cut(s) 41, 98, 116, 657, 919, 934
Sau96I GGNCC 3 cut(s) 54, 508, 773
SchI GAGTC 2 cut(s) 118, 140
ScrFI CCNGG 4 cut(s) 65, 222, 965, 1101
SduI GDGCHC 2 cut(s) 87, 227
SfaNI GCATC 4 cut(s) 134, 780, 861, 1114
SfcI CTRYAG 4 cut(s) 120, 396, 976, 1005
SinI GGWCC 3 cut(s) 54, 508, 773
Sse9I AATT 9 cut(s) 14, 433, 668, 810, 855, 890, 911, 969, 1019
SseBI AGGCCT 1 cut(s) 715
SsiI CCGC 4 cut(s) 152, 171, 211, 237
SspI AATATT 1 cut(s) 702
SspMI CTAG 1 cut(s) 743
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 4 cut(s) 63, 220, 963, 1099
TaaI ACNGT 4 cut(s) 82, 361, 980, 1014
TaiI ACGT 1 cut(s) 879
TaqI TCGA 6 cut(s) 72, 77, 115, 609, 624, 949
TasI AATT 9 cut(s) 14, 433, 668, 810, 855, 890, 911, 969, 1019
TatI WGTACW 1 cut(s) 285
TauI GCSGC 4 cut(s) 155, 174, 214, 240
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 3 cut(s) 433, 753, 1162
TseI GCWGC 4 cut(s) 122, 392, 1004, 1085
TspDTI ATGAA 1 cut(s) 633
TspRI CASTG 3 cut(s) 433, 753, 1162
VpaK11BI GGWCC 3 cut(s) 54, 508, 773
XapI RAATTY 3 cut(s) 433, 855, 911
XceI RCATGY 1 cut(s) 1168
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 982
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.