Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Reverse (-)

18426492 .. 18428578

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGATTTCTACTTTAACACTCACACAATCTCTCTATACACGTTCCTTCAGACCAACCATCTTCTTTTCTTCTTCTTCTTCCTCGTCCTTTTCGTGTCTCTGTTCTTCTTCCTCCGATTGCGAGCCGAAACTCTCCGTCAAGAAACGCGTTTTCGGAGTGGGTTTAGGGTTCCTAGCTTCTTCGATTCTCTCTCTAACGCCTCTGGACGCAGACGCCACGAGGATTGACTACTACGCCACTGTAGGAGATCCTCTCTGCGAATACAGCTACGCAAAATCAGGACTTGGATTTTGCGATCTCGATGTTGGATTTGGTGATGAAGCCCCTCGTGGCGTACTCGTCAATATCCATTACACGGCGAGGTTTGCAGATGGAACGTTGTTTGACAGTAGCTATAAGCGTGCAAGACCACTTACTATGCGAATTGGAGTCGGCAAGGTAATTAGGGGACTAGACCAGGGGATTCTTGGAGGCGAAGGAGTACCTCCTATGCGAGTAGGCGGAAAGCGTAAACTTCAGATTCCACCTAAGTTAGCTTATGGACCAGAGCCTGCAGGATGCTTTTCTGGTGACTGCAACATACCTGGCAATGCAACTTTGCTCTATGATATCAACTTTGTTGAGATCTACCCAGGAAGTAATACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

217

Amino Acids

23.26

Weight (kDa)

8.44

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	108 - 206	3.6e-25	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AciI	CCGC	1 cut(s)	504
AclI	AACGTT	1 cut(s)	380
AclWI	GGATC	1 cut(s)	245
AcuI	CTGAAG	2 cut(s)	34, 503
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	2 cut(s)	339, 486
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflIII	ACRYGT	2 cut(s)	41, 148
AjnI	CCWGG	3 cut(s)	459, 586, 634
AluBI	AGCT	4 cut(s)	179, 270, 396, 539
AluI	AGCT	4 cut(s)	179, 270, 396, 539
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	554
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	329, 584
AvaII	GGWCC	1 cut(s)	545
BauI	CACGAG	2 cut(s)	220, 330
BccI	CCATC	2 cut(s)	68, 368
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	3 cut(s)	461, 588, 636
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	176, 455
BfmI	CTRYAG	2 cut(s)	243, 555
BglII	AGATCT	1 cut(s)	627
Bme1390I	CCNGG	3 cut(s)	461, 588, 636
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	3 cut(s)	461, 588, 636
BmsI	GCATC	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	460, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	598
BseBI	CCWGG	3 cut(s)	461, 588, 636
BseDI	CCNNGG	2 cut(s)	460, 634
BseGI	GGATG	1 cut(s)	566
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	250, 298, 627
BspACI	CCGC	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	598
BssECI	CCNNGG	2 cut(s)	460, 634
BssMI	GATC	3 cut(s)	250, 298, 627
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	2 cut(s)	220, 330
Bst2BI	CACGAG	2 cut(s)	220, 330
Bst2UI	CCWGG	3 cut(s)	461, 588, 636
Bst4CI	ACNGT	2 cut(s)	244, 392
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	125, 405, 555
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	566
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	3 cut(s)	253, 301, 630
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	250, 298, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 368
BstNI	CCWGG	3 cut(s)	461, 588, 636
BstSCI	CCNGG	3 cut(s)	459, 586, 634
BstSFI	CTRYAG	2 cut(s)	243, 555
BstUI	CGCG	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	250, 627
BstYI	RGATCY	2 cut(s)	250, 627
BtsCI	GGATG	1 cut(s)	566
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	125, 405, 555
CaiI	CAGNNNCTG	1 cut(s)	554
Cfr13I	GGNCC	1 cut(s)	545
CseI	GACGC	2 cut(s)	218, 224
Csp6I	GTAC	2 cut(s)	338, 485
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviJI	RGCY	7 cut(s)	127, 179, 270, 326, 396, 539, 553
CviKI_1	RGCY	7 cut(s)	127, 179, 270, 326, 396, 539, 553
CviQI	GTAC	2 cut(s)	338, 485
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	3 cut(s)	252, 300, 629
DpnII	GATC	3 cut(s)	250, 298, 627
EciI	GGCGGA	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	34, 503
EcoRII	CCWGG	3 cut(s)	459, 586, 634
EcoRV	GATATC	1 cut(s)	613
FaiI	YATR	7 cut(s)	39, 399, 422, 494, 543, 584, 609
FaqI	GGGAC	1 cut(s)	465
FokI	GGATG	1 cut(s)	573
FspBI	CTAG	2 cut(s)	176, 455
HgaI	GACGC	2 cut(s)	218, 224
Hin1I	GRCGYC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	187, 432, 466, 523
HphI	GGTGA	2 cut(s)	329, 584
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	4 cut(s)	53, 118, 158, 522
Hpy188III	TCNNGA	4 cut(s)	142, 206, 282, 302
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	2 cut(s)	58, 473
HpyCH4III	ACNGT	2 cut(s)	244, 392
HpyCH4IV	ACGT	2 cut(s)	43, 380
HpyCH4V	TGCA	5 cut(s)	371, 407, 557, 579, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 368
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	2 cut(s)	43, 380
Hsp92I	GRCGYC	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	250, 298, 627
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	2 cut(s)	176, 455
MaeII	ACGT	2 cut(s)	43, 380
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	3 cut(s)	252, 300, 629
MboI	GATC	3 cut(s)	250, 298, 627
MboII	GAAGA	8 cut(s)	55, 63, 66, 69, 72, 99, 102, 174
MflI	RGATCY	2 cut(s)	250, 627
MluCI	AATT	2 cut(s)	426, 444
MluI	ACGCGT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	9 cut(s)	94, 124, 213, 216, 264, 339, 357, 467, 498
MseI	TTAA	1 cut(s)	17
MspR9I	CCNGG	3 cut(s)	461, 588, 636
MvaI	CCWGG	3 cut(s)	461, 588, 636
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	267, 368
NdeII	GATC	3 cut(s)	250, 298, 627
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	187, 466, 523
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Psp1406I	AACGTT	1 cut(s)	380
Psp6I	CCWGG	3 cut(s)	459, 586, 634
PspGI	CCWGG	3 cut(s)	459, 586, 634
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	2 cut(s)	250, 627
RsaI	GTAC	2 cut(s)	339, 486
RsaNI	GTAC	2 cut(s)	338, 485
SaqAI	TTAA	1 cut(s)	17
Sau3AI	GATC	3 cut(s)	250, 298, 627
Sau96I	GGNCC	1 cut(s)	545
SbfI	CCTGCAGG	1 cut(s)	559
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	3 cut(s)	461, 588, 636
SdaI	CCTGCAGG	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	2 cut(s)	243, 555
SinI	GGWCC	1 cut(s)	545
Sse8387I	CCTGCAGG	1 cut(s)	559
Sse9I	AATT	2 cut(s)	426, 444
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	2 cut(s)	176, 455
StyD4I	CCNGG	3 cut(s)	459, 586, 634
TaaI	ACNGT	2 cut(s)	244, 392
TaiI	ACGT	2 cut(s)	46, 383
TaqI	TCGA	2 cut(s)	185, 303
TasI	AATT	2 cut(s)	426, 444
TfiI	GAWTC	3 cut(s)	187, 466, 523
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XspI	CTAG	2 cut(s)	176, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.