Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Reverse (-)

18347626 .. 18355390

Gene Structure 7765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGATACCCATTCCCAAACTGAAGCTAATTTCTCGATTTCATGCGTCGTCATTGTCATCGCCACCTTCATCCGGTCTTCTGCTCCCGCAAACTTAAGAGACGATGAAGAAGAACCCAATACACAAAAGGCCTTTACCTTTTCGCTCCCATTTTTTTTGTTTTTTGGGGAAAGTCGAGTTTTGAGGACTTACACCTTTGTTACTGTATTGGTGGATGGGAAGGTGATCAACAAAGCCGGTACTCCAGTATCTAATAAAGCTGTTGTAAAGAATATGGCTGAAGTCCCCAAATATGTATCTAGACCTGTTATGCTGAAGGTGATCAACAAAGTCAGTACTCAAGTATCTAATAAAGCTGTTGTAAAGAATATGGCTGAAGTCCCCAAATATTATGGTGCATTGTTTGTTTATGGAGTTGATGTTGGATATGGCCAGGTTGCAGATGAACTTGTAGCAGAGTTTTCTGACCCTATCAATGGTGTCACATCCCCTGATCAAATTGAGGAGGTGCGCATTGAAGTGGTTGATTATATACAGAGTTTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

182

Amino Acids

20.13

Weight (kDa)

5.07

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	512
AciI	CCGC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	430
AcuI	CTGAAG	4 cut(s)	42, 300, 335, 396
AfaI	GTAC	2 cut(s)	241, 337
AfiI	CCNNNNNNNGG	2 cut(s)	72, 476
AflII	CTTAAG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	3 cut(s)	26, 260, 356
AluI	AGCT	3 cut(s)	26, 260, 356
Alw26I	GTCTC	1 cut(s)	93
AoxI	GGCC	2 cut(s)	129, 430
AspLEI	GCGC	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	235, 331
BaeI	ACNNNNGTAYC	6 cut(s)	231, 231, 264, 264, 327, 360
BalI	TGGCCA	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	69
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	434
BclI	TGATCA	3 cut(s)	225, 321, 493
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	94
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 476
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	434
BseGI	GGATG	3 cut(s)	69, 220, 485
BseLI	CCNNNNNNNGG	2 cut(s)	72, 476
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	518
BshFI	GGCC	2 cut(s)	131, 432
BsiSI	CCGG	2 cut(s)	73, 237
BslFI	GGGAC	2 cut(s)	269, 365
BslI	CCNNNNNNNGG	2 cut(s)	72, 476
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	269, 365
BsnI	GGCC	2 cut(s)	131, 432
Bsp143I	GATC	3 cut(s)	225, 321, 493
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	2 cut(s)	131, 432
BspTI	CTTAAG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	3 cut(s)	225, 321, 493
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	205
BstAFI	CTTAAG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	69, 220, 485
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	3 cut(s)	228, 324, 496
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	3 cut(s)	225, 321, 493
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	131, 432
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	69, 220, 485
CfoI	GCGC	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	236
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	240, 336
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	8 cut(s)	26, 131, 236, 260, 278, 356, 374, 432
CviKI_1	RGCY	8 cut(s)	26, 131, 236, 260, 278, 356, 374, 432
CviQI	GTAC	2 cut(s)	240, 336
DpnI	GATC	3 cut(s)	227, 323, 495
DpnII	GATC	3 cut(s)	225, 321, 493
EaeI	YGGCCR	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	131
Eco57I	CTGAAG	4 cut(s)	42, 300, 335, 396
EcoRII	CCWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	1 cut(s)	45
FaqI	GGGAC	2 cut(s)	269, 365
FatI	CATG	1 cut(s)	41
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	3 cut(s)	225, 321, 493
FokI	GGATG	3 cut(s)	56, 227, 472
FspAI	RTGCGCAY	1 cut(s)	512
FspBI	CTAG	1 cut(s)	300
FspI	TGCGCA	1 cut(s)	512
GlaI	GCGC	1 cut(s)	512
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	131, 432
HapII	CCGG	2 cut(s)	73, 237
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	1 cut(s)	45
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HpaII	CCGG	2 cut(s)	73, 237
HphI	GGTGA	2 cut(s)	235, 331
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	2 cut(s)	34, 300
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	76, 214, 310
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	398, 440
Hsp92II	CATG	1 cut(s)	45
HspAI	GCGC	1 cut(s)	511
Ksp22I	TGATCA	3 cut(s)	225, 321, 493
Kzo9I	GATC	3 cut(s)	225, 321, 493
LmnI	GCTCC	2 cut(s)	88, 150
LpnPI	CCDG	7 cut(s)	86, 250, 258, 318, 419, 446, 504
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	199, 481
MalI	GATC	3 cut(s)	227, 323, 495
MboI	GATC	3 cut(s)	225, 321, 493
MboII	GAAGA	3 cut(s)	69, 119, 122
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	2 cut(s)	28, 498
MluNI	TGGCCA	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	3 cut(s)	177, 496, 499
Mox20I	TGGCCA	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	432
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	2 cut(s)	73, 237
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
NdeII	GATC	3 cut(s)	225, 321, 493
NlaIII	CATG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	481
NsbI	TGCGCA	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
RsaI	GTAC	2 cut(s)	241, 337
RsaNI	GTAC	2 cut(s)	240, 336
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	1 cut(s)	95
Sau3AI	GATC	3 cut(s)	225, 321, 493
ScaI	AGTACT	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	94, 339
SmoI	CTYRAG	2 cut(s)	94, 339
Sse9I	AATT	2 cut(s)	28, 498
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	87
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	35, 175
TasI	AATT	2 cut(s)	28, 498
TatI	WGTACW	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	4 cut(s)	30, 58, 120, 459
Vha464I	CTTAAG	1 cut(s)	94
XbaI	TCTAGA	1 cut(s)	299
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.