Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Reverse (-)

63760382 .. 63764868

Gene Structure 4487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGACAGCCTCTGCTCTAACCATTACTCCAAAGCTTCACCACATTCAGACCCTTAATCCCAAAACCTCATTCCCTTCTTGCTGTTCATGTTCTTGTTCCTCAGCAACTGAAAACAATGCCAGGCTAACTTGGGAATCAAATGTTGTGAGTAAAAGGAGTGTGTTCAATGTGGGTATTGGTCTCTTAGCAGCTTCAGTTGTGGCATTGTCACCTTTGGAAGCTAATGCCACGAGAGTCGAGTACTACGCCACCGTGGGAGAGCCTCTGTGTGAGATGAACTTTGCTCGTTCTGGGCTTGGTTTCTGTGATCTGTCAGTCGGGTCGGGTATTCAAGCTCCTCGTGGTGAGCTCATCAATATTCACTACACTGCAAGATTCGGTGATGGGACAGTCTTTGACAGCAGCTACAAACGTGGTAGACCTCTCACTATGCGCATTGGTGTTGGCAAGGTCATTAAGGGACTGGATCAAGGAATTTTTGGGGGTGAAGGTGTGCCTCCAATGCAAGTGGGTGACTGCAATATACCTGGAAATGCTATTCTTGACTACGATATTAATTTTGTTGGCATCTACTCGGGAAATAGAGCATTACCTACAAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

201

Amino Acids

21.35

Weight (kDa)

8.17

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	112 - 171	4.7e-13	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	418
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	166, 332
AjnI	CCWGG	2 cut(s)	119, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	34, 191, 221, 335, 349, 405
AluI	AGCT	6 cut(s)	34, 191, 221, 335, 349, 405
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	474
AlwNI	CAGNNNCTG	2 cut(s)	11, 107
Ama87I	CYCGRG	1 cut(s)	574
ApeKI	GCWGC	2 cut(s)	188, 402
ApoI	RAATTY	1 cut(s)	474
AseI	ATTAAT	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	6 cut(s)	29, 201, 356, 392, 497, 524
AvaI	CYCGRG	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	351
BauI	CACGAG	2 cut(s)	229, 339
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	200, 414
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	2 cut(s)	121, 528
BcoDI	GTCTC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	189, 403
BlsI	GCNGC	2 cut(s)	190, 404
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	121, 528
BmeT110I	CYCGRG	1 cut(s)	574
BmrFI	CCNGG	2 cut(s)	121, 528
BmsI	GCATC	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	121, 528
BseDI	CCNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	200, 414
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	574
BslFI	GGGAC	2 cut(s)	400, 474
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	2 cut(s)	400, 474
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	307, 466
BspCNI	CTCAG	1 cut(s)	113
BspPI	GGATC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	307, 466
BssSI	CACGAG	2 cut(s)	229, 339
Bst2BI	CACGAG	2 cut(s)	229, 339
Bst2UI	CCWGG	2 cut(s)	121, 528
Bst4CI	ACNGT	2 cut(s)	253, 391
BstDEI	CTNAG	2 cut(s)	100, 184
BstDSI	CCRYGG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	310, 469
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	307, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	502
BstNI	CCWGG	2 cut(s)	121, 528
BstSCI	CCNGG	2 cut(s)	119, 526
BstV1I	GCAGC	2 cut(s)	200, 414
BtgI	CCRYGG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
CaiI	CAGNNNCTG	2 cut(s)	11, 107
CfoI	GCGC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	241
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	100, 184
DpnI	GATC	2 cut(s)	309, 468
DpnII	GATC	2 cut(s)	307, 466
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	2 cut(s)	119, 526
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	1 cut(s)	90
FaiI	YATR	3 cut(s)	88, 431, 524
FaqI	GGGAC	2 cut(s)	400, 474
FatI	CATG	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	189, 403
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	189, 403
FspAI	RTGCGCAY	1 cut(s)	434
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	2 cut(s)	189, 403
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	3 cut(s)	134, 234, 375
HphI	GGTGA	6 cut(s)	29, 201, 356, 392, 497, 524
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	2 cut(s)	542, 576
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	84, 482
HpyCH4III	ACNGT	2 cut(s)	253, 391
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	3 cut(s)	371, 505, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	502
HpyF3I	CTNAG	2 cut(s)	100, 184
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	307, 466
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	6 cut(s)	106, 133, 276, 449, 513, 540
Lsp1109I	GCAGC	2 cut(s)	200, 414
LweI	GCATC	1 cut(s)	576
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	2 cut(s)	207, 512
MalI	GATC	2 cut(s)	309, 468
MboI	GATC	2 cut(s)	307, 466
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	2 cut(s)	474, 556
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	7 cut(s)	19, 76, 109, 273, 348, 432, 507
MseI	TTAA	3 cut(s)	54, 456, 555
MspR9I	CCNGG	2 cut(s)	121, 528
MvaI	CCWGG	2 cut(s)	121, 528
MwoI	GCNNNNNNNGC	1 cut(s)	502
NdeII	GATC	2 cut(s)	307, 466
NlaIII	CATG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	207, 512
NsbI	TGCGCA	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	134, 375
PkrI	GCNGC	2 cut(s)	190, 404
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	119, 526
PspGI	CCWGG	2 cut(s)	119, 526
PstNI	CAGNNNCTG	2 cut(s)	11, 107
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	54, 456, 555
SatI	GCNGC	2 cut(s)	189, 403
Sau3AI	GATC	2 cut(s)	307, 466
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	121, 528
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	576
Sse9I	AATT	2 cut(s)	474, 556
SspI	AATATT	1 cut(s)	358
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	119, 526
TaaI	ACNGT	2 cut(s)	253, 391
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	474, 556
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	134, 375
Tru1I	TTAA	3 cut(s)	54, 456, 555
Tru9I	TTAA	3 cut(s)	54, 456, 555
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	207, 512
TseI	GCWGC	2 cut(s)	188, 402
Tsp45I	GTSAC	2 cut(s)	207, 512
TspDTI	ATGAA	2 cut(s)	75, 290
TspRI	CASTG	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	418
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.