Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Reverse (-)

36069096 .. 36073152

Gene Structure 4057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1328100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGGTTTCTACTCTAATCCTTACAACTCCAAAGCCCCTAGCCCAAATTCAACCCCCTAATCCTCCTCCTGCAACCTCACTCTCCTCCTCCAAACCCACTTCCACTTGTTCTTGGTCATCTTCTTCATTCTCAGCAACTGCAAACAATGCAAACAAATCTTCCTGGAAATTTTCAAATATTTTGAGCAAGAAGTCCGTAATGGATGTGGGTATGGGGCTGTTAGCATCTTCAATTATGGCATTGTCTCCTTTGGAAGCTGACGCCACGAGAATTGAGTACTACGCCACCGTGGGGGAGCCTCTCTGTGACTTGAACTTTGTTCGTTCTGGGCTTGGTTTCTGTGATGTTTCAGTTGGCCCCGGCGTCGAAGCTCCTCGCGGTGAGCTCATCAATATTCACTACACCGCAAGATTCGCTGATGGGACAGTCTTTGACAGTAGCTACAAACGAGGCAGACCTCTAACTTTGCGTATTGGTGTTGGCAAGGTTATTAGGGGACTGGATCAAGGTATTTTAGGGGGTGAGGGTGTGCCTCCAATGCAAATAGGGGGAAAGCGGAAGCTTAAAATTCCTTCACATTTAGCATATGGGCCAGAACCTGCAGGATGCTTCTCAGGTGACTGCAATATACCTGGAAATGCTACTCTTGTCTACGATATTAATTTTGTTGGTATCTACTCGGGAAATAGAGCATTGCCGGGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

237

Amino Acids

24.8

Weight (kDa)

9.11

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	125 - 222	2.9e-25	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	381
AciI	CCGC	4 cut(s)	5, 381, 408, 559
AclWI	GGATC	1 cut(s)	513
AcsI	RAATTY	3 cut(s)	48, 170, 570
AcyI	GRCGYC	2 cut(s)	264, 366
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	53, 177, 234, 316
AjnI	CCWGG	2 cut(s)	164, 634
AluBI	AGCT	5 cut(s)	260, 374, 388, 444, 565
AluI	AGCT	5 cut(s)	260, 374, 388, 444, 565
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	2 cut(s)	140, 602
Ama87I	CYCGRG	1 cut(s)	682
AoxI	GGCC	2 cut(s)	358, 593
ApoI	RAATTY	3 cut(s)	48, 170, 570
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AseI	ATTAAT	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	359, 593
AsuC2I	CCSGG	2 cut(s)	363, 702
AsuHPI	GGTGA	3 cut(s)	395, 536, 632
AvaI	CYCGRG	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	390
BccI	CCATC	1 cut(s)	416
BciT130I	CCWGG	2 cut(s)	166, 636
BcnI	CCSGG	2 cut(s)	363, 702
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	610
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	4 cut(s)	166, 363, 636, 702
BmeT110I	CYCGRG	1 cut(s)	682
BmgT120I	GGNCC	2 cut(s)	359, 593
BmiI	GGNNCC	2 cut(s)	300, 361
BmrFI	CCNGG	4 cut(s)	166, 363, 636, 702
BmsI	GCATC	2 cut(s)	236, 599
BpuMI	CCSGG	2 cut(s)	363, 702
BsaHI	GRCGYC	2 cut(s)	264, 366
BsaJI	CCNNGG	2 cut(s)	291, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	695
BseBI	CCWGG	2 cut(s)	166, 636
BseDI	CCNNGG	2 cut(s)	291, 361
BseGI	GGATG	2 cut(s)	211, 614
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	2 cut(s)	147, 630
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	4 cut(s)	57, 76, 79, 366
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	360, 595
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	2 cut(s)	363, 701
BslFI	GGGAC	2 cut(s)	439, 513
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	439, 513
BsnI	GGCC	2 cut(s)	360, 595
BsoBI	CYCGRG	1 cut(s)	682
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	505
BspACI	CCGC	4 cut(s)	5, 381, 408, 559
BspANI	GGCC	2 cut(s)	360, 595
BspCNI	CTCAG	2 cut(s)	146, 629
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	300, 361
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	291, 361
BssMI	GATC	1 cut(s)	505
BssNI	GRCGYC	2 cut(s)	264, 366
BssSI	CACGAG	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	166, 636
Bst4CI	ACNGT	3 cut(s)	292, 430, 440
BstACI	GRCGYC	2 cut(s)	264, 366
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	133, 616
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	211, 614
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 416, 541
BstNI	CCWGG	2 cut(s)	166, 636
BstSCI	CCNGG	4 cut(s)	164, 361, 634, 700
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	360, 595
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	211, 614
BveI	ACCTGC	1 cut(s)	610
CaiI	CAGNNNCTG	2 cut(s)	140, 602
Cfr13I	GGNCC	2 cut(s)	359, 593
CseI	GACGC	2 cut(s)	272, 355
Csp6I	GTAC	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	133, 616
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	682
EcoICRI	GAGCTC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	164, 634
EcoT38I	GRGCYC	1 cut(s)	390
FaiI	YATR	5 cut(s)	215, 239, 589, 591, 632
FaqI	GGGAC	2 cut(s)	439, 513
FauNDI	CATATG	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	654
FokI	GGATG	2 cut(s)	218, 621
FriOI	GRGCYC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	360, 595
HapII	CCGG	2 cut(s)	363, 701
HgaI	GACGC	2 cut(s)	272, 355
Hin1I	GRCGYC	2 cut(s)	264, 366
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	1 cut(s)	414
HpaII	CCGG	2 cut(s)	363, 701
HphI	GGTGA	3 cut(s)	395, 536, 632
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188III	TCNNGA	1 cut(s)	684
Hpy8I	GTNNAC	1 cut(s)	655
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	585
HpyCH4III	ACNGT	3 cut(s)	292, 430, 440
HpyCH4V	TGCA	6 cut(s)	74, 143, 152, 544, 605, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 416, 541
HpyF3I	CTNAG	2 cut(s)	133, 616
Hsp92I	GRCGYC	2 cut(s)	264, 366
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	2 cut(s)	298, 379
LweI	GCATC	2 cut(s)	236, 599
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	308, 620
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	4 cut(s)	114, 117, 153, 222
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	6 cut(s)	48, 170, 234, 273, 570, 664
MseI	TTAA	2 cut(s)	567, 663
MspI	CCGG	2 cut(s)	363, 701
MspR9I	CCNGG	4 cut(s)	166, 363, 636, 702
MvaI	CCWGG	2 cut(s)	166, 636
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	149, 416, 541
NciI	CCSGG	2 cut(s)	363, 702
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	1 cut(s)	505
NlaIV	GGNNCC	2 cut(s)	300, 361
NmuCI	GTSAC	2 cut(s)	308, 620
PfeI	GAWTC	1 cut(s)	414
PfoI	TCCNGGA	1 cut(s)	164
PshBI	ATTAAT	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	164, 634
PspGI	CCWGG	2 cut(s)	164, 634
PspN4I	GGNNCC	2 cut(s)	300, 361
PspPI	GGNCC	2 cut(s)	359, 593
PstI	CTGCAG	1 cut(s)	607
PstNI	CAGNNNCTG	2 cut(s)	140, 602
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	567, 663
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	2 cut(s)	359, 593
SbfI	CCTGCAGG	1 cut(s)	607
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	4 cut(s)	166, 363, 636, 702
SdaI	CCTGCAGG	1 cut(s)	607
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	236, 599
SfcI	CTRYAG	1 cut(s)	603
Sse8387I	CCTGCAGG	1 cut(s)	607
Sse9I	AATT	6 cut(s)	48, 170, 234, 273, 570, 664
SsiI	CCGC	4 cut(s)	5, 381, 408, 559
SspI	AATATT	2 cut(s)	181, 397
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	164, 361, 634, 700
TaaI	ACNGT	3 cut(s)	292, 430, 440
TaqI	TCGA	1 cut(s)	369
TasI	AATT	6 cut(s)	48, 170, 234, 273, 570, 664
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	2 cut(s)	567, 663
Tru9I	TTAA	2 cut(s)	567, 663
TseFI	GTSAC	2 cut(s)	308, 620
Tsp45I	GTSAC	2 cut(s)	308, 620
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	663
XapI	RAATTY	3 cut(s)	48, 170, 570
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.