Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Reverse (-)

18338689 .. 18339474

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTCAAGTGACTCCACTCGGAGCCGGCCTAACTCCAGGCGACAACCCCCACATCATTAGGCCCACAAAGCGCCCCACCATCCTCGTCCCTCTCTGCAGCCTCGTCTTCCTCATCGGCTTCGTCAGCTTCCTGGTTTTGGTCATCTATTTTATGATCACCAGGGATCCCACACTCCCCAAGTTCAAGGTCGAATCGGCCACCGTGACCCAACTCAACATAGAAGGCTCCAAGTTAACCGCCACGTGGGACTTCACTCTCCTTGCCACCAACCCTAGCCGCAAACTCGAACCCTACTACAGCCGTGTCCAGGCCGGGGTCCGCTACCAGGATGGGTACCGCGATGTTTACACCCTCGTGAAAAAGCCGTTCCCTTCGTTTGTTCTGAGCCGGAGGAACCAGACACGTGTCGGTTTGAGACTCGGAGTGTGGAGGCAACCGGGGAGGCAAGTGGCGCAGGGAATCTCCGGCGAGAGGAAGAGTGAGTTGGTGAGTTTCGGAGTCAAACTCCTGGCTAAGGTGTGGTTTGAGTACTCTAGGATATTGCCGGCGGAACGAGGTTGGCTGCTGGTCTCCTGCGATAGGGTTGATTTTGATTTTTCCGGGAAGAATGGGACCGGCGAAATGACGAGTCGGTCTGGGCAGTGCGATATTGACTACTACCCAATACTTCCCTTGGGTAGTACTATCAGTAAGGATGAGTTGGCAAATGCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

239

Amino Acids

26.77

Weight (kDa)

9.65

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	634
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccII	CGCG	1 cut(s)	342
AciI	CCGC	5 cut(s)	240, 280, 322, 340, 551
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	1 cut(s)	198
AcvI	CACGTG	2 cut(s)	246, 407
AfaI	GTAC	3 cut(s)	338, 533, 685
AfiI	CCNNNNNNNGG	8 cut(s)	139, 246, 310, 316, 328, 474, 517, 582
AflIII	ACRYGT	2 cut(s)	404, 406
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	6 cut(s)	37, 132, 161, 309, 327, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	412, 577
AlwI	GGATC	2 cut(s)	161, 174
AoxI	GGCC	4 cut(s)	28, 62, 198, 312
ApeKI	GCWGC	2 cut(s)	99, 565
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	2 cut(s)	75, 457
AspS9I	GGNCC	3 cut(s)	63, 319, 615
AsuC2I	CCSGG	3 cut(s)	316, 441, 604
AsuHPI	GGTGA	2 cut(s)	151, 502
AvaII	GGWCC	2 cut(s)	319, 615
BamHI	GGATCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	356
BbrPI	CACGTG	2 cut(s)	246, 407
BbsI	GAAGAC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	111, 552
BccI	CCATC	2 cut(s)	89, 326
BceAI	ACGGC	2 cut(s)	288, 352
BciT130I	CCWGG	6 cut(s)	39, 134, 163, 311, 329, 512
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	3 cut(s)	316, 441, 604
BcoDI	GTCTC	2 cut(s)	412, 577
BfaI	CTAG	2 cut(s)	276, 537
BfmI	CTRYAG	2 cut(s)	97, 298
BfoI	RGCGCY	1 cut(s)	76
BisI	GCNGC	3 cut(s)	100, 280, 566
BlsI	GCNGC	3 cut(s)	101, 281, 567
BmcAI	AGTACT	2 cut(s)	533, 685
Bme1390I	CCNGG	9 cut(s)	39, 134, 163, 311, 316, 329, 441, 512, 604
Bme18I	GGWCC	2 cut(s)	319, 615
BmgT120I	GGNCC	3 cut(s)	63, 319, 615
BmiI	GGNNCC	7 cut(s)	25, 168, 229, 320, 338, 398, 616
BmrFI	CCNGG	9 cut(s)	39, 134, 163, 311, 316, 329, 441, 512, 604
BoxI	GACNNNNGTC	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	100
BplI	GAGNNNNNCTC	2 cut(s)	492, 524
BpmI	CTGGAG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	516
BpuMI	CCSGG	3 cut(s)	316, 441, 604
BsaAI	YACGTR	2 cut(s)	246, 407
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	4 cut(s)	162, 315, 440, 675
Bsc4I	CCNNNNNNNGG	8 cut(s)	139, 246, 310, 316, 328, 474, 517, 582
Bse118I	RCCGGY	3 cut(s)	26, 547, 617
BseBI	CCWGG	6 cut(s)	39, 134, 163, 311, 329, 512
BseDI	CCNNGG	4 cut(s)	162, 315, 440, 675
BseGI	GGATG	3 cut(s)	81, 337, 703
BseLI	CCNNNNNNNGG	8 cut(s)	139, 246, 310, 316, 328, 474, 517, 582
BseMII	CTCAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	111, 552
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	30, 64, 200, 314
BshNI	GGYRCC	1 cut(s)	336
BsiSI	CCGG	8 cut(s)	27, 315, 391, 440, 468, 548, 603, 618
BslFI	GGGAC	3 cut(s)	74, 263, 628
BslI	CCNNNNNNNGG	8 cut(s)	139, 246, 310, 316, 328, 474, 517, 582
BsmAI	GTCTC	2 cut(s)	412, 577
BsmFI	GGGAC	3 cut(s)	74, 263, 628
BsnI	GGCC	4 cut(s)	30, 64, 200, 314
Bso31I	GGTCTC	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	156, 166
BspACI	CCGC	5 cut(s)	240, 280, 322, 340, 551
BspANI	GGCC	4 cut(s)	30, 64, 200, 314
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	7 cut(s)	25, 168, 229, 320, 338, 398, 616
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	2 cut(s)	161, 174
BspT107I	GGYRCC	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	577
BsrFI	RCCGGY	3 cut(s)	26, 547, 617
BssAI	RCCGGY	3 cut(s)	26, 547, 617
BssECI	CCNNGG	4 cut(s)	162, 315, 440, 675
BssMI	GATC	2 cut(s)	156, 166
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	356
Bst2UI	CCWGG	6 cut(s)	39, 134, 163, 311, 329, 512
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	473
BstBAI	YACGTR	2 cut(s)	246, 407
BstC8I	GCNNGC	2 cut(s)	28, 549
BstDEI	CTNAG	2 cut(s)	386, 516
BstENI	CCTNNNNNAGG	2 cut(s)	515, 580
BstF5I	GGATG	3 cut(s)	81, 337, 703
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	75, 457
BstKTI	GATC	2 cut(s)	159, 169
BstMAI	GTCTC	2 cut(s)	412, 577
BstMBI	GATC	2 cut(s)	156, 166
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 126, 454
BstNI	CCWGG	6 cut(s)	39, 134, 163, 311, 329, 512
BstPAI	GACNNNNGTC	1 cut(s)	407
BstSCI	CCNGG	9 cut(s)	37, 132, 161, 309, 314, 327, 439, 510, 602
BstSFI	CTRYAG	2 cut(s)	97, 298
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	111, 552
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	30, 64, 200, 314
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	81, 337, 703
BtsI	GCAGTG	1 cut(s)	650
BtsIMutI	CAGTG	1 cut(s)	650
Cac8I	GCNNGC	2 cut(s)	28, 549
CfoI	GCGC	2 cut(s)	75, 457
Cfr10I	RCCGGY	3 cut(s)	26, 547, 617
Cfr13I	GGNCC	3 cut(s)	63, 319, 615
Csp6I	GTAC	3 cut(s)	337, 532, 684
CviQI	GTAC	3 cut(s)	337, 532, 684
DdeI	CTNAG	2 cut(s)	386, 516
DpnI	GATC	2 cut(s)	158, 168
DpnII	GATC	2 cut(s)	156, 166
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
EciI	GGCGGA	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	675
Eco31I	GGTCTC	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	319, 615
Eco72I	CACGTG	2 cut(s)	246, 407
EcoNI	CCTNNNNNAGG	2 cut(s)	515, 580
EcoRII	CCWGG	6 cut(s)	37, 132, 161, 309, 327, 510
EcoT14I	CCWWGG	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	675
FaiI	YATR	4 cut(s)	155, 221, 716, 718
FaqI	GGGAC	3 cut(s)	74, 263, 628
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	100, 280, 566
FokI	GGATG	3 cut(s)	68, 344, 710
Fsp4HI	GCNGC	3 cut(s)	100, 280, 566
FspBI	CTAG	2 cut(s)	276, 537
GlaI	GCGC	2 cut(s)	74, 456
GluI	GCNGC	3 cut(s)	100, 280, 566
GsuI	CTGGAG	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	4 cut(s)	30, 64, 200, 314
HapII	CCGG	8 cut(s)	27, 315, 391, 440, 468, 548, 603, 618
HhaI	GCGC	2 cut(s)	75, 457
Hin6I	GCGC	2 cut(s)	73, 455
HinP1I	GCGC	2 cut(s)	73, 455
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	6 cut(s)	13, 194, 420, 462, 501, 631
HpaI	GTTAAC	1 cut(s)	237
HpaII	CCGG	8 cut(s)	27, 315, 391, 440, 468, 548, 603, 618
HphI	GGTGA	2 cut(s)	151, 502
Hpy166II	GTNNAC	2 cut(s)	237, 349
Hpy188I	TCNGA	4 cut(s)	23, 387, 425, 500
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	2 cut(s)	237, 349
HpyAV	CCTTC	2 cut(s)	218, 384
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	245, 406
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 126, 454
HpyF3I	CTNAG	2 cut(s)	386, 516
HpySE526I	ACGT	2 cut(s)	245, 406
HspAI	GCGC	2 cut(s)	73, 455
KpnI	GGTACC	1 cut(s)	340
KroI	GCCGGC	2 cut(s)	26, 547
KroNI	GCCGGC	2 cut(s)	28, 549
Ksp22I	TGATCA	1 cut(s)	156
KspAI	GTTAAC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	156, 166
LmnI	GCTCC	2 cut(s)	23, 233
Lsp1109I	GCAGC	2 cut(s)	111, 552
MaeI	CTAG	2 cut(s)	276, 537
MaeII	ACGT	2 cut(s)	245, 406
MaeIII	GTNAC	2 cut(s)	10, 205
MalI	GATC	2 cut(s)	158, 168
MboI	GATC	2 cut(s)	156, 166
MboII	GAAGA	3 cut(s)	100, 490, 619
MflI	RGATCY	1 cut(s)	166
MlyI	GAGTC	4 cut(s)	7, 414, 510, 640
MroNI	GCCGGC	2 cut(s)	26, 547
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	8 cut(s)	27, 315, 391, 440, 468, 548, 603, 618
MspR9I	CCNGG	9 cut(s)	39, 134, 163, 311, 316, 329, 441, 512, 604
MvaI	CCWGG	6 cut(s)	39, 134, 163, 311, 329, 512
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	70, 126, 454
NaeI	GCCGGC	2 cut(s)	28, 549
NciI	CCSGG	3 cut(s)	316, 441, 604
NdeII	GATC	2 cut(s)	156, 166
NgoMIV	GCCGGC	2 cut(s)	26, 547
NlaIV	GGNNCC	7 cut(s)	25, 168, 229, 320, 338, 398, 616
NmuCI	GTSAC	2 cut(s)	10, 205
OliI	CACNNNNGTG	1 cut(s)	356
PdiI	GCCGGC	2 cut(s)	28, 549
PfeI	GAWTC	2 cut(s)	194, 462
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	3 cut(s)	101, 281, 567
PleI	GAGTC	4 cut(s)	7, 414, 509, 639
PmaCI	CACGTG	2 cut(s)	246, 407
PmlI	CACGTG	2 cut(s)	246, 407
PpsI	GAGTC	4 cut(s)	7, 414, 509, 639
Ppu21I	YACGTR	2 cut(s)	246, 407
PshAI	GACNNNNGTC	1 cut(s)	407
Psp6I	CCWGG	6 cut(s)	37, 132, 161, 309, 327, 510
PspCI	CACGTG	2 cut(s)	246, 407
PspGI	CCWGG	6 cut(s)	37, 132, 161, 309, 327, 510
PspN4I	GGNNCC	7 cut(s)	25, 168, 229, 320, 338, 398, 616
PspPI	GGNCC	3 cut(s)	63, 319, 615
PstI	CTGCAG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	3 cut(s)	338, 533, 685
RsaNI	GTAC	3 cut(s)	337, 532, 684
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	3 cut(s)	100, 280, 566
Sau3AI	GATC	2 cut(s)	156, 166
Sau96I	GGNCC	3 cut(s)	63, 319, 615
ScaI	AGTACT	2 cut(s)	533, 685
SchI	GAGTC	4 cut(s)	7, 414, 510, 640
ScrFI	CCNGG	9 cut(s)	39, 134, 163, 311, 316, 329, 441, 512, 604
SetI	ASST	6 cut(s)	131, 192, 248, 409, 522, 562
SfcI	CTRYAG	2 cut(s)	97, 298
SinI	GGWCC	2 cut(s)	319, 615
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	5 cut(s)	240, 280, 322, 340, 551
SspMI	CTAG	2 cut(s)	276, 537
StyD4I	CCNGG	9 cut(s)	37, 132, 161, 309, 314, 327, 439, 510, 602
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	248, 409
TaqI	TCGA	2 cut(s)	192, 288
TaqII	GACCGA	1 cut(s)	624
TatI	WGTACW	2 cut(s)	531, 683
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	194, 462
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	650
TseFI	GTSAC	2 cut(s)	10, 205
TseI	GCWGC	2 cut(s)	99, 565
Tsp45I	GTSAC	2 cut(s)	10, 205
TspRI	CASTG	1 cut(s)	650
VpaK11BI	GGWCC	2 cut(s)	319, 615
XagI	CCTNNNNNAGG	2 cut(s)	515, 580
XspI	CTAG	2 cut(s)	276, 537
ZrmI	AGTACT	2 cut(s)	533, 685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.