Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Forward (+)

13591222 .. 13597239

Gene Structure 6018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21630.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAGTCGCTGCTCTCACCATTACTCCAAAGCTTCACTCTCACATTCCCAAAACCTCATTCGCTTCTTATTCTTCTTCATGTTTATGTTCCTTTTCCTCATCGTCAACTGAAAACAATGCCAAGGTGACTTTGCAACCAAATGTTGTGAGCAAAAGGAGTGTGTTCAATGTGGGTATTGGGCTATTAGCAGCTTCGGTTGTGGCATTGTCACCTTTGGAAGCCAATGCCACGAGAGTTGAGTACTACGCCACCGTCGGTGAGCCTCTTTGTGAGATGAACTTTGCTCGTTCTGGCCTTGGTTTCTGTGATTTGTCTGTCGGGTCGGGTGTGCAAGCTCCACGTGGTGAGCTCATCAATATTCACTACACTGCAAGATTCGGTGACGGGACAGTCTTTGACAGCAGTTACAAACGTGGTAGACCTCTCACTATGCGTATTGGTGTTGGCAAGGTCATTAAGGGATTGGATCAAGGAATTTTTGGGGGTGAAGGTGTGCCTCCAATGCAAGTAGGGGGAAAACGGAAGCTTCACATTCCTTCAAATTTAGCATATGGGCCAGAACCTGCCGGGTGCTTTGCAGGTGACTGCAATATACCTGGAAATGCTATTCTTGACTACGATATTAATTTTGTTGGCATCTACTCGGGAAATAGAGCATTGCCTACAAGTCTGCTCGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

229

Amino Acids

23.94

Weight (kDa)

8.9

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	113 - 181	9.6e-15	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
AasI	GACNNNNNNGTC	1 cut(s)	392
Acc36I	ACCTGC	2 cut(s)	572, 574
AccI	GTMKAC	1 cut(s)	421
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	477, 544
AcvI	CACGTG	1 cut(s)	344
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	169, 543
AjnI	CCWGG	1 cut(s)	598
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	5 cut(s)	34, 194, 338, 352, 529
AluI	AGCT	5 cut(s)	34, 194, 338, 352, 529
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	477
AlwNI	CAGNNNCTG	2 cut(s)	11, 566
Ama87I	CYCGRG	2 cut(s)	646, 677
AoxI	GGCC	2 cut(s)	295, 557
ApeKI	GCWGC	2 cut(s)	11, 191
ApoI	RAATTY	2 cut(s)	477, 544
AseI	ATTAAT	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	8 cut(s)	10, 139, 204, 272, 359, 395, 500, 596
AvaI	CYCGRG	2 cut(s)	646, 677
BanII	GRGCYC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	232
BbrPI	CACGTG	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	571
BfuAI	ACCTGC	2 cut(s)	572, 574
BisI	GCNGC	2 cut(s)	12, 192
BlsI	GCNGC	2 cut(s)	13, 193
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	571, 600
BmeT110I	CYCGRG	2 cut(s)	646, 677
BmgT120I	GGNCC	1 cut(s)	557
BmrFI	CCNGG	2 cut(s)	571, 600
BmsI	GCATC	1 cut(s)	648
BpuMI	CCSGG	1 cut(s)	571
BsaAI	YACGTR	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	123, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse3DI	GCAATG	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	123, 298
BseMI	GCAATG	1 cut(s)	659
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	2 cut(s)	297, 559
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	2 cut(s)	646, 677
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	2 cut(s)	297, 559
BsoBI	CYCGRG	2 cut(s)	646, 677
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	469
BspANI	GGCC	2 cut(s)	297, 559
BspMI	ACCTGC	2 cut(s)	572, 574
BspPI	GGATC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	659
BssECI	CCNNGG	2 cut(s)	123, 298
BssMI	GATC	1 cut(s)	469
BssSI	CACGAG	1 cut(s)	232
BssT1I	CCWWGG	2 cut(s)	123, 298
Bst2BI	CACGAG	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	256, 394
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	472
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 505
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	569, 598
BstV1I	GCAGC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	297, 559
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	2 cut(s)	572, 574
Cac8I	GCNNGC	1 cut(s)	336
CaiI	CAGNNNCTG	2 cut(s)	11, 566
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	1 cut(s)	81
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
DraIII	CACNNNGTG	1 cut(s)	347
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	123, 298
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
Eco72I	CACGTG	1 cut(s)	344
Eco88I	CYCGRG	2 cut(s)	646, 677
EcoICRI	GAGCTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	2 cut(s)	123, 298
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	123, 298
FaeI	CATG	1 cut(s)	84
FaiI	YATR	6 cut(s)	82, 88, 434, 553, 555, 596
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	80
FauNDI	CATATG	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	12, 192
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	12, 192
GluI	GCNGC	2 cut(s)	12, 192
HaeIII	GGCC	2 cut(s)	297, 559
HapII	CCGG	1 cut(s)	570
Hin1II	CATG	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	2 cut(s)	32, 527
HinfI	GANTC	1 cut(s)	378
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	8 cut(s)	10, 139, 204, 272, 359, 395, 500, 596
Hpy166II	GTNNAC	2 cut(s)	108, 422
Hpy188III	TCNNGA	3 cut(s)	614, 648, 679
Hpy8I	GTNNAC	2 cut(s)	108, 422
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	485, 549
HpyCH4III	ACNGT	2 cut(s)	256, 394
HpyCH4IV	ACGT	2 cut(s)	343, 415
HpyCH4V	TGCA	6 cut(s)	136, 334, 374, 508, 581, 591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 505
HpySE526I	ACGT	2 cut(s)	343, 415
Hsp92II	CATG	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	7 cut(s)	279, 567, 573, 579, 583, 585, 612
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	1 cut(s)	648
MaeII	ACGT	2 cut(s)	343, 415
MaeIII	GTNAC	5 cut(s)	127, 210, 383, 407, 584
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	2 cut(s)	66, 69
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	477, 544, 628
MnlI	CCTC	5 cut(s)	67, 109, 276, 435, 510
MseI	TTAA	2 cut(s)	459, 627
MslI	CAYNNNNRTG	1 cut(s)	85
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	2 cut(s)	571, 600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	11, 505
NciI	CCSGG	1 cut(s)	571
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	84
NmuCI	GTSAC	4 cut(s)	127, 210, 383, 584
PaqCI	CACCTGC	1 cut(s)	572
PfeI	GAWTC	1 cut(s)	378
PkrI	GCNGC	2 cut(s)	13, 193
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
Ppu21I	YACGTR	1 cut(s)	344
PshBI	ATTAAT	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	598
PspCI	CACGTG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	557
PstNI	CAGNNNCTG	2 cut(s)	11, 566
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	459, 627
SatI	GCNGC	2 cut(s)	12, 192
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	571, 600
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	477, 544, 628
SspI	AATATT	1 cut(s)	361
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	569, 598
StyI	CCWWGG	2 cut(s)	123, 298
TaaI	ACNGT	2 cut(s)	256, 394
TaiI	ACGT	2 cut(s)	346, 418
TasI	AATT	3 cut(s)	477, 544, 628
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	459, 627
Tru9I	TTAA	2 cut(s)	459, 627
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	4 cut(s)	127, 210, 383, 584
TseI	GCWGC	2 cut(s)	11, 191
Tsp45I	GTSAC	4 cut(s)	127, 210, 383, 584
TspDTI	ATGAA	2 cut(s)	69, 293
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	376
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	2 cut(s)	477, 544
XmiI	GTMKAC	1 cut(s)	421
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.