Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008334.1

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Forward (+)

89410 .. 93196

Gene Structure 3787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008334.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgacagcctctgctctaaccattactccaaagcttcacccccacattcagacccttaatcccaaaacctcattcccttcttgctgttcatgttcttgttcctcagcaactgaaaacaatggcaagctaacttgggaatcaaatgttgtgaataaaaggagtgtgttcaatgtgggtattggtctcttagcagcttcagttgtggcattgtcacctttggaagctaatgccacgagagttgagtactacgccaccgtgggagagcctctgtgtgagatgaactttgctcgttctgggcttggtttctgtgatctgtcagtcgggtcgggtatacaagctcctcgtggtgagctcatcaatattcactacactgcaagattcggtgatgggacagtctttgacagcagctacaaacgtggtagacctctcactatgcgcattggtgttggcaaggtcattaagggactggatcaaggaatttttgggggtgaaggtgtgcctccaatgcaagtaggggggaaacggaagcttcacattccttcaaatttagcatatgggccagaacctgccggatgctttgcaggtgactgcaatatacctggaaatgctattcttgactacgatattaattttgttggcatctactcgggaaatagagcattacctacaaagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

225

Amino Acids

23.81

Weight (kDa)

8.78

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
Acc16I	TGCGCA	1 cut(s)	437
Acc36I	ACCTGC	2 cut(s)	572, 574
AccI	GTMKAC	2 cut(s)	331, 421
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	477, 544
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	169, 543
AjnI	CCWGG	1 cut(s)	598
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	8 cut(s)	34, 127, 194, 224, 338, 352, 408, 529
AluI	AGCT	8 cut(s)	34, 127, 194, 224, 338, 352, 408, 529
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	477
AlwNI	CAGNNNCTG	3 cut(s)	11, 110, 566
Ama87I	CYCGRG	1 cut(s)	646
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	191, 405
ApoI	RAATTY	2 cut(s)	477, 544
AseI	ATTAAT	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	6 cut(s)	29, 204, 359, 395, 500, 596
AvaI	CYCGRG	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	354
BauI	CACGAG	2 cut(s)	232, 342
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	203, 417
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	188
BfuAI	ACCTGC	2 cut(s)	572, 574
BisI	GCNGC	2 cut(s)	192, 406
BlsI	GCNGC	2 cut(s)	193, 407
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	600
BmeT110I	CYCGRG	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	563, 648
Bpu10I	CCTNAGC	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	578
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	203, 417
BshFI	GGCC	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	2 cut(s)	403, 477
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	403, 477
BsnI	GGCC	1 cut(s)	559
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	310, 469
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	1 cut(s)	116
BspMI	ACCTGC	2 cut(s)	572, 574
BspPI	GGATC	1 cut(s)	477
BspTNI	GGTCTC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	310, 469
BssNAI	GTATAC	1 cut(s)	332
BssSI	CACGAG	2 cut(s)	232, 342
Bst1107I	GTATAC	1 cut(s)	332
Bst2BI	CACGAG	2 cut(s)	232, 342
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	256, 394
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	103, 187
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	2 cut(s)	313, 472
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	310, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	598
BstV1I	GCAGC	2 cut(s)	203, 417
BstZ17I	GTATAC	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	559
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	578
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	2 cut(s)	572, 574
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	3 cut(s)	11, 110, 566
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	1 cut(s)	90
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	103, 187
DpnI	GATC	2 cut(s)	312, 471
DpnII	GATC	2 cut(s)	310, 469
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	646
EcoICRI	GAGCTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	1 cut(s)	93
FaiI	YATR	6 cut(s)	91, 332, 434, 553, 555, 596
FaqI	GGGAC	2 cut(s)	403, 477
FatI	CATG	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	553
FblI	GTMKAC	2 cut(s)	331, 421
Fnu4HI	GCNGC	2 cut(s)	192, 406
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	192, 406
FspAI	RTGCGCAY	1 cut(s)	437
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	2 cut(s)	192, 406
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	1 cut(s)	570
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	2 cut(s)	32, 527
HinfI	GANTC	2 cut(s)	137, 378
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	6 cut(s)	29, 204, 359, 395, 500, 596
Hpy166II	GTNNAC	2 cut(s)	332, 422
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	614, 648
Hpy8I	GTNNAC	2 cut(s)	332, 422
HpyAV	CCTTC	3 cut(s)	87, 485, 549
HpyCH4III	ACNGT	2 cut(s)	256, 394
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	4 cut(s)	374, 508, 581, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	2 cut(s)	103, 187
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	1 cut(s)	93
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	310, 469
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	8 cut(s)	279, 452, 567, 573, 579, 583, 585, 612
Lsp1109I	GCAGC	2 cut(s)	203, 417
LweI	GCATC	2 cut(s)	563, 648
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	2 cut(s)	210, 584
MalI	GATC	2 cut(s)	312, 471
MboI	GATC	2 cut(s)	310, 469
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	477, 544, 628
MnlI	CCTC	7 cut(s)	19, 79, 112, 276, 351, 435, 510
MseI	TTAA	3 cut(s)	57, 459, 627
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	1 cut(s)	505
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	2 cut(s)	310, 469
NlaIII	CATG	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	210, 584
NsbI	TGCGCA	1 cut(s)	437
PaqCI	CACCTGC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	137, 378
PkrI	GCNGC	2 cut(s)	193, 407
PshBI	ATTAAT	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	557
PstNI	CAGNNNCTG	3 cut(s)	11, 110, 566
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	57, 459, 627
SatI	GCNGC	2 cut(s)	192, 406
Sau3AI	GATC	2 cut(s)	310, 469
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	2 cut(s)	563, 648
Sse9I	AATT	3 cut(s)	477, 544, 628
SspI	AATATT	1 cut(s)	361
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	256, 394
TaiI	ACGT	1 cut(s)	418
TasI	AATT	3 cut(s)	477, 544, 628
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	137, 378
Tru1I	TTAA	3 cut(s)	57, 459, 627
Tru9I	TTAA	3 cut(s)	57, 459, 627
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	2 cut(s)	210, 584
TseI	GCWGC	2 cut(s)	191, 405
Tsp45I	GTSAC	2 cut(s)	210, 584
TspDTI	ATGAA	2 cut(s)	78, 293
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	376
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	2 cut(s)	477, 544
XmiI	GTMKAC	2 cut(s)	331, 421
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.