Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005713

Physical Location & Seq

Genomic Coordinates Forward (+)

28348939 .. 28354240

Gene Structure 5302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACAGCCTCTGCTCTAACCATTACTCCAAAGCTTCACCCCCACATTCAGACCCTTAATCCCAAAACCTCATTCCCTTCTTGCTGTTCATGTTCTTGTTCCTCAGCAACTGAAAACAATGCCAAGCTAACTTGGGAATCAAATGTTGTGAATAAAAGGAGTGTGTTCAATGTGGGTATTGGTCTCTTAGCAGCTTCAGTTGTGGCATTGTCACCTTTGGAAGCTAATGCCACGAGAGTTGAGTACTACGCCACCGTGGGAGAGCCTCTGTGTGAGATGAACTTTGCTCGTTCTGGGCTTGGTTTCTGTGATCTGTCAGTCGGGTCGGGTATACAAGCTCCTCGTGGTGAGCTCATCAATATTCACTACACTGCAAGATTTGGTGATGGGACAGTCTTTGACAGCAGCTACAAACGTGGTAGACCTCTCACTATGCGCATTGGTGTTGGCAAGATTCTAGGGCAAATGTTTCTTGTACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

160

Amino Acids

17.13

Weight (kDa)

8.82

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	113 - 153	1.9e-07	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39710 AT4G39710 AT4G39710
fragaria_vesca	FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630 FvH4_1g21630
malus_domestica	MD15G1328100.v1.1
prunus_persica	Prupe.6G179400_v2.0.a1 Prupe.6G179400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115501
rosa_laevigata	RLG00000018188
rosa_multiflora	Rmu_sc0008334.1_g000015
rosa_roxburghii	Rroxscaffold_2G00128150 Rroxscaffold_2G00129030
rosa_rugosa	Rorug02G0196900 Rorug02G0197000 Rorug02G0197100
rosa_samantha	Rh2AG254700 Rh2BG265400 Rh2CG259900 Rh2DG262800
rosa_wichuraiana	Rw2G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	437
AccI	GTMKAC	2 cut(s)	331, 421
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	245, 477
AgsI	TTSAA	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	7 cut(s)	34, 127, 194, 224, 338, 352, 408
AluI	AGCT	7 cut(s)	34, 127, 194, 224, 338, 352, 408
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	188
AlwNI	CAGNNNCTG	2 cut(s)	11, 110
ApeKI	GCWGC	2 cut(s)	191, 405
AspLEI	GCGC	1 cut(s)	438
AsuHPI	GGTGA	4 cut(s)	29, 204, 359, 395
BanII	GRGCYC	1 cut(s)	354
BauI	CACGAG	2 cut(s)	232, 342
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	203, 417
BccI	CCATC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	458, 481
BisI	GCNGC	2 cut(s)	192, 406
BlsI	GCNGC	2 cut(s)	193, 407
BmcAI	AGTACT	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
BseDI	CCNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	203, 417
BsiHKAI	GWGCWC	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	310
BssNAI	GTATAC	1 cut(s)	332
BssSI	CACGAG	2 cut(s)	232, 342
Bst1107I	GTATAC	1 cut(s)	332
Bst2BI	CACGAG	2 cut(s)	232, 342
Bst4CI	ACNGT	2 cut(s)	256, 394
BstDEI	CTNAG	2 cut(s)	103, 187
BstDSI	CCRYGG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	203, 417
BstZ17I	GTATAC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
CaiI	CAGNNNCTG	2 cut(s)	11, 110
CfoI	GCGC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	244, 476
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	1 cut(s)	90
CviQI	GTAC	2 cut(s)	244, 476
DdeI	CTNAG	2 cut(s)	103, 187
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	1 cut(s)	93
FaiI	YATR	3 cut(s)	91, 332, 434
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	89
FblI	GTMKAC	2 cut(s)	331, 421
Fnu4HI	GCNGC	2 cut(s)	192, 406
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	192, 406
FspAI	RTGCGCAY	1 cut(s)	437
FspBI	CTAG	2 cut(s)	458, 481
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	2 cut(s)	192, 406
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	2 cut(s)	137, 454
HphI	GGTGA	4 cut(s)	29, 204, 359, 395
Hpy166II	GTNNAC	2 cut(s)	332, 422
Hpy188I	TCNGA	1 cut(s)	51
Hpy8I	GTNNAC	2 cut(s)	332, 422
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	2 cut(s)	256, 394
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	103, 187
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	1 cut(s)	93
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	1 cut(s)	279
Lsp1109I	GCAGC	2 cut(s)	203, 417
MaeI	CTAG	2 cut(s)	458, 481
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	354
MnlI	CCTC	6 cut(s)	19, 79, 112, 276, 351, 435
MseI	TTAA	1 cut(s)	57
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	210
NsbI	TGCGCA	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	137, 454
PkrI	GCNGC	2 cut(s)	193, 407
Psp124BI	GAGCTC	1 cut(s)	354
PstNI	CAGNNNCTG	2 cut(s)	11, 110
RsaI	GTAC	2 cut(s)	245, 477
RsaNI	GTAC	2 cut(s)	244, 476
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	192, 406
Sau3AI	GATC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	354
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	458, 481
SstI	GAGCTC	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	256, 394
TaiI	ACGT	1 cut(s)	418
TatI	WGTACW	2 cut(s)	243, 475
TfiI	GAWTC	2 cut(s)	137, 454
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	2 cut(s)	191, 405
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	78, 293
TspRI	CASTG	1 cut(s)	376
XmiI	GTMKAC	2 cut(s)	331, 421
XspI	CTAG	2 cut(s)	458, 481
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.