AT4G39740

Protein SCO1 homolog 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012218
Physical Location & Seq
Reverse (-)
18435293 .. 18437258
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39740.1

Sequence Viewer

Length: 831 bp
ATGCTTCCTTGTCGCCGTCTTGTTCTGTCCTGCAAGAATCAAGCTGCCAGTTTTCTCCGAAGGTGTGGACCATCGAAACGAATTCAATCAGTCAATTACTGTAAATCAACAAGACAGGGCCATGAAATTCCAGATGTGAAACCTCTTTTTCCCACAGGAGGAGGAACTCAAGCTCCTTCTCGTTCTCGTGCTCGTTATGCTGTTCCTGCGATTCTACTTGGTTTTGCCGGATTCGTCGGCTTTCTTCATTACAACGACGAAAGGAGAGCAGTTCCTAGAGGTCAAGCAAGCAGCAATAGCGGTTGTGGCTGCGGTTCTAATACAACTGTCAAAGGTCCGATTATCGGAGGTCCGTTTACGCTTGTGAGCACAGAAAACAAGATAGTCACAGAGAATGACTTTTGTGGTAAATGGGTTCTACTCTACTTTGGATACTCTTTTTCCCCGGATGTTGGACCTGAGCAACTAAAGATGATGTCCAAAGCTGTTGATAAACTAGAGTCTAAACATAACGAGAAGATTCTGCCTGTCTTTGTCACTCTTGACCCTCAACGAGACACACCTTCTCATCTCCACGCATACTTGAAAGAGTTTGATAGTAGAATACTAGGACTAACCGGGACTGCAAGTGCAATGAGGCAAATGGCACAAGAGTATCGTGTCTACTTCAAGAAGGTTCAAGAGGACGGAGAAGATTATCTCGTTGATACTTCTCACAACATGTACTTGATAAATCCGAAGATGGAGATTGTGAGGTGCTTTGGGGTTGAGTATAATCCAGACGAGCTCTCACAAGAGCTTCTTAAAGAAGTTGCTTCTGTTTCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCO1-SenC

Protein Analysis

276

Amino Acids

30.77

Weight (kDa)

8.83

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCO1-SenC PF02630 116 - 249 2.9e-43 SCO1/SenC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39740
fragaria_vesca FvH4_1g21130 FvH4_1g21130
malus_domestica MD01G1027600.v1.1
prunus_persica Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1
pyrus_communis pycom01g05570
rosa_chinensis RchiOBHm_Chr2g0114911
rosa_laevigata RLG00000018134
rosa_multiflora Rmu_sc0002764.1_g000020
rosa_roxburghii Rroxscaffold_2G00130440
rosa_rugosa Rorug02G0191700
rosa_samantha Rh2AG250500 Rh2BG259900 Rh2CG254700 Rh2DG258600
rosa_wichuraiana Rw2G019520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 663
AciI CCGC 2 cut(s) 300, 312
AcsI RAATTY 2 cut(s) 81, 126
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 3 cut(s) 158, 344, 452
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 4 cut(s) 86, 586, 670, 680
AloI GAACNNNNNNTCC 2 cut(s) 157, 189
AluBI AGCT 5 cut(s) 44, 173, 485, 787, 799
AluI AGCT 5 cut(s) 44, 173, 485, 787, 799
Alw21I GWGCWC 3 cut(s) 193, 371, 789
Alw26I GTCTC 1 cut(s) 549
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 44, 291, 309
ApoI RAATTY 2 cut(s) 81, 126
AspS9I GGNCC 5 cut(s) 68, 118, 335, 350, 455
AsuC2I CCSGG 2 cut(s) 446, 619
AvaII GGWCC 4 cut(s) 68, 335, 350, 455
BaeI ACNNNNGTAYC 2 cut(s) 638, 671
BanII GRGCYC 1 cut(s) 789
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 3 cut(s) 193, 371, 789
BbvI GCAGC 3 cut(s) 31, 296, 303
BccI CCATC 2 cut(s) 79, 736
BciVI GTATCC 1 cut(s) 425
BcnI CCSGG 2 cut(s) 446, 619
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 3 cut(s) 276, 497, 608
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 3 cut(s) 45, 292, 310
BlsI GCNGC 3 cut(s) 46, 293, 311
Bme1390I CCNGG 2 cut(s) 446, 619
Bme18I GGWCC 4 cut(s) 68, 335, 350, 455
BmgT120I GGNCC 5 cut(s) 68, 118, 335, 350, 455
BmrFI CCNGG 2 cut(s) 446, 619
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 2 cut(s) 446, 619
BsaJI CCNNGG 1 cut(s) 444
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 344, 452
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 3 cut(s) 158, 344, 452
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 3 cut(s) 31, 296, 303
BshFI GGCC 1 cut(s) 120
BsiHKAI GWGCWC 3 cut(s) 193, 371, 789
BsiSI CCGG 3 cut(s) 228, 446, 618
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 3 cut(s) 158, 344, 452
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 634
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 3 cut(s) 193, 371, 789
BspACI CCGC 2 cut(s) 300, 312
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 444
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst4CI ACNGT 3 cut(s) 101, 328, 828
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 454
BstMAI GTCTC 1 cut(s) 549
BstMWI GCNNNNNNNGC 4 cut(s) 197, 206, 297, 306
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 444, 617
BstV1I GCAGC 3 cut(s) 31, 296, 303
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 289
Cfr13I GGNCC 5 cut(s) 68, 118, 335, 350, 455
Csp6I GTAC 1 cut(s) 724
CviAII CATG 2 cut(s) 122, 721
CviJI RGCY 8 cut(s) 44, 120, 173, 240, 309, 485, 787, 799
CviKI_1 RGCY 8 cut(s) 44, 120, 173, 240, 309, 485, 787, 799
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 787
Eco24I GRGCYC 1 cut(s) 789
Eco47I GGWCC 4 cut(s) 68, 335, 350, 455
Eco53kI GAGCTC 1 cut(s) 787
EcoICRI GAGCTC 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 789
FaeI CATG 2 cut(s) 125, 724
FaiI YATR 6 cut(s) 123, 198, 510, 580, 722, 774
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FaqI GGGAC 1 cut(s) 634
FatI CATG 2 cut(s) 121, 720
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 3 cut(s) 45, 292, 310
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 3 cut(s) 45, 292, 310
FspBI CTAG 3 cut(s) 276, 497, 608
GluI GCNGC 3 cut(s) 45, 292, 310
HaeIII GGCC 1 cut(s) 120
HapII CCGG 3 cut(s) 228, 446, 618
Hin1II CATG 2 cut(s) 125, 724
HinfI GANTC 5 cut(s) 37, 211, 231, 500, 520
HpaII CCGG 3 cut(s) 228, 446, 618
Hpy166II GTNNAC 3 cut(s) 68, 357, 664
Hpy188I TCNGA 4 cut(s) 59, 339, 347, 738
Hpy188III TCNNGA 5 cut(s) 131, 542, 670, 680, 779
Hpy8I GTNNAC 3 cut(s) 68, 357, 664
Hpy99I CGWCG 2 cut(s) 239, 260
HpyAV CCTTC 4 cut(s) 54, 186, 573, 667
HpyCH4III ACNGT 3 cut(s) 101, 328, 828
HpyCH4V TGCA 3 cut(s) 33, 626, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 206, 297, 306
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 2 cut(s) 125, 724
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 3 cut(s) 31, 296, 303
MaeI CTAG 3 cut(s) 276, 497, 608
MaeIII GTNAC 2 cut(s) 385, 535
MboII GAAGA 4 cut(s) 236, 529, 704, 751
MhlI GDGCHC 3 cut(s) 193, 371, 789
MluCI AATT 3 cut(s) 81, 94, 126
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 9 cut(s) 152, 153, 155, 272, 341, 558, 630, 676, 747
MseI TTAA 1 cut(s) 804
MspI CCGG 3 cut(s) 228, 446, 618
MspR9I CCNGG 2 cut(s) 446, 619
MwoI GCNNNNNNNGC 4 cut(s) 197, 206, 297, 306
NciI CCSGG 2 cut(s) 446, 619
NlaIII CATG 2 cut(s) 125, 724
NmuCI GTSAC 2 cut(s) 385, 535
NspI RCATGY 1 cut(s) 724
PciI ACATGT 1 cut(s) 720
PfeI GAWTC 4 cut(s) 37, 211, 231, 520
PkrI GCNGC 3 cut(s) 46, 293, 311
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PscI ACATGT 1 cut(s) 720
Psp124BI GAGCTC 1 cut(s) 789
PspPI GGNCC 5 cut(s) 68, 118, 335, 350, 455
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
SacI GAGCTC 1 cut(s) 789
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 3 cut(s) 45, 292, 310
Sau96I GGNCC 5 cut(s) 68, 118, 335, 350, 455
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 446, 619
SduI GDGCHC 3 cut(s) 193, 371, 789
SinI GGWCC 4 cut(s) 68, 335, 350, 455
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 3 cut(s) 81, 94, 126
SsiI CCGC 2 cut(s) 300, 312
SspMI CTAG 3 cut(s) 276, 497, 608
SstI GAGCTC 1 cut(s) 789
StyD4I CCNGG 2 cut(s) 444, 617
TaaI ACNGT 3 cut(s) 101, 328, 828
TaqI TCGA 1 cut(s) 74
TasI AATT 3 cut(s) 81, 94, 126
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 4 cut(s) 37, 211, 231, 520
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TseFI GTSAC 2 cut(s) 385, 535
TseI GCWGC 3 cut(s) 44, 291, 309
Tsp45I GTSAC 2 cut(s) 385, 535
TspDTI ATGAA 2 cut(s) 138, 236
TspGWI ACGGA 2 cut(s) 342, 702
VpaK11BI GGWCC 4 cut(s) 68, 335, 350, 455
XapI RAATTY 2 cut(s) 81, 126
XceI RCATGY 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 663
XspI CTAG 3 cut(s) 276, 497, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.