MD01G1027600.v1.1

Protein SCO1 homolog 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0012218
Physical Location & Seq
Reverse (-)
10296886 .. 10302416
5531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1027600.v1.1.491

Sequence Viewer

Length: 819 bp
ATGCCCTTTCCTCGGTTCATTTTCTTCTCGTCCAAACAACGCTCACAGGAGGCTCTCAATCTACTTCGGAGGTCTGGCTTCTCTAAGAAAATGCAGTCACGTAATTATGCCAAGTCATCGAACCATGCCAATGGGAAGACAGATATTAGACCTCCTATGAATGTAGAAACACCACCGGCTTCTCACTCATGGGGCACCTATGTTATTCCGGCTGCTGGTATACTAGGATTTGCTGGTATTGCAACTTTCATTCGCTATAACGATGAGAGGAGAGTAACTTTGAAAGGTCAGGGTAACAACCAGTGCATGAACAATGTCAGGGGCCCTATAATCGGTGGTCCATTCACTTTAGTAGACACAGAGAATCACACGGTCACTGAACGGAATCTATTAGGAAACTGGGTTCTTCTCTACTTTGGATATACTTCTTCTCCTGATGTTGGACCGGAGCAAGTCCAGATGATGGCCAAGACCATAAACATATTAGAGTCGAGATATAATTTGAAGGCTCTACCAGTATTTGTTACGCTTGATCCAGAACGTGACAACCCTTCTCATCTTCGTGCCTACCTCAAAGAGTTTGATTCAAGGATTGTGGGGTTAACTGGACCTGTATCAGCTATAAGGCAGATAGCTCAGGAATACCGTGCTTATTTTAAGAAGGTTGAAGAAGACAGAGATGACTATCTCGTTGAGTCTTCCCACAACATGTATTTGATGAACCCAAACATGGAAGTTGTGAGATGCTTTGGTGTAGAGTACAATGCAGAAGAACTGTCAGAAGCAATAGTAAAGGAACTGAAAAGAACCTCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCO1-SenC

Protein Analysis

273

Amino Acids

30.93

Weight (kDa)

8.95

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCO1-SenC PF02630 112 - 245 1.5e-41 SCO1/SenC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39740
fragaria_vesca FvH4_1g21130 FvH4_1g21130
malus_domestica MD01G1027600.v1.1
prunus_persica Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1
pyrus_communis pycom01g05570
rosa_chinensis RchiOBHm_Chr2g0114911
rosa_laevigata RLG00000018134
rosa_multiflora Rmu_sc0002764.1_g000020
rosa_roxburghii Rroxscaffold_2G00130440
rosa_rugosa Rorug02G0191700
rosa_samantha Rh2AG250500 Rh2BG259900 Rh2CG254700 Rh2DG258600
rosa_wichuraiana Rw2G019520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 463
AccI GTMKAC 2 cut(s) 220, 354
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 465
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 6 cut(s) 12, 215, 332, 440, 463, 730
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 4 cut(s) 283, 505, 588, 668
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 2 cut(s) 620, 635
AluI AGCT 2 cut(s) 620, 635
AlwI GGATC 1 cut(s) 527
AoxI GGCC 2 cut(s) 322, 465
ApaI GGGCCC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 212
AspS9I GGNCC 5 cut(s) 322, 323, 338, 443, 608
AvaII GGWCC 3 cut(s) 338, 443, 608
BaeGI GKGCMC 2 cut(s) 197, 326
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 326
BbsI GAAGAC 3 cut(s) 143, 678, 690
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 457
BfaI CTAG 1 cut(s) 224
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 3 cut(s) 338, 443, 608
BmgT120I GGNCC 5 cut(s) 322, 323, 338, 443, 608
BmiI GGNNCC 3 cut(s) 196, 323, 324
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 734
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 3 cut(s) 143, 678, 690
Bpu10I CCTNAGC 1 cut(s) 636
BsaAI YACGTR 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 215, 332, 440, 463, 730
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 4 cut(s) 301, 404, 515, 610
Bse8I GATNNNNATC 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 6 cut(s) 12, 215, 332, 440, 463, 730
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 4 cut(s) 301, 404, 515, 610
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 2 cut(s) 197, 326
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 324, 467
BshNI GGYRCC 1 cut(s) 194
BsiSI CCGG 3 cut(s) 176, 209, 446
BslI CCNNNNNNNGG 6 cut(s) 12, 215, 332, 440, 463, 730
BsnI GGCC 2 cut(s) 324, 467
Bsp120I GGGCCC 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 197, 326
Bsp143I GATC 1 cut(s) 532
BspANI GGCC 2 cut(s) 324, 467
BspCNI CTCAG 1 cut(s) 649
BspLI GGNNCC 3 cut(s) 196, 323, 324
BspPI GGATC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 4 cut(s) 301, 404, 515, 610
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 532
BssNAI GTATAC 1 cut(s) 221
Bst1107I GTATAC 1 cut(s) 221
Bst4CI ACNGT 3 cut(s) 373, 647, 777
BstBAI YACGTR 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 84, 636
BstKTI GATC 1 cut(s) 535
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 712
BstSLI GKGCMC 2 cut(s) 197, 326
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 3 cut(s) 143, 678, 690
BstXI CCANNNNNNTGG 1 cut(s) 131
BstZ17I GTATAC 1 cut(s) 221
BsuRI GGCC 2 cut(s) 324, 467
BtsIMutI CAGTG 2 cut(s) 308, 375
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 5 cut(s) 322, 323, 338, 443, 608
Csp6I GTAC 1 cut(s) 760
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 5 cut(s) 125, 189, 307, 709, 730
CviJI RGCY 9 cut(s) 53, 78, 179, 212, 324, 467, 509, 620, 635
CviKI_1 RGCY 9 cut(s) 53, 78, 179, 212, 324, 467, 509, 620, 635
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 2 cut(s) 84, 636
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 3 cut(s) 338, 443, 608
EcoO109I RGGNCCY 2 cut(s) 322, 323
EcoT38I GRGCYC 1 cut(s) 326
FaeI CATG 5 cut(s) 128, 192, 310, 712, 733
FatI CATG 5 cut(s) 124, 188, 306, 708, 729
FblI GTMKAC 2 cut(s) 220, 354
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 224
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 2 cut(s) 324, 467
HapII CCGG 3 cut(s) 176, 209, 446
Hin1II CATG 5 cut(s) 128, 192, 310, 712, 733
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HinfI GANTC 5 cut(s) 364, 385, 488, 584, 695
HpaI GTTAAC 1 cut(s) 603
HpaII CCGG 3 cut(s) 176, 209, 446
Hpy166II GTNNAC 3 cut(s) 221, 355, 603
Hpy188I TCNGA 2 cut(s) 69, 781
Hpy188III TCNNGA 5 cut(s) 434, 457, 492, 536, 638
Hpy8I GTNNAC 3 cut(s) 221, 355, 603
HpyAV CCTTC 3 cut(s) 499, 561, 655
HpyCH4III ACNGT 3 cut(s) 373, 647, 777
HpyCH4IV ACGT 2 cut(s) 100, 541
HpyCH4V TGCA 4 cut(s) 94, 242, 306, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 84, 636
HpySE526I ACGT 2 cut(s) 100, 541
Hsp92II CATG 5 cut(s) 128, 192, 310, 712, 733
KspAI GTTAAC 1 cut(s) 603
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 734
MaeI CTAG 1 cut(s) 224
MaeII ACGT 2 cut(s) 100, 541
MaeIII GTNAC 6 cut(s) 96, 274, 293, 373, 523, 542
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 9 cut(s) 16, 148, 398, 420, 551, 680, 683, 690, 782
MhlI GDGCHC 2 cut(s) 197, 326
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 2 cut(s) 103, 499
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 2 cut(s) 497, 704
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 6 cut(s) 21, 43, 63, 162, 261, 581
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MseI TTAA 3 cut(s) 602, 657, 817
MslI CAYNNNNRTG 2 cut(s) 129, 561
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 3 cut(s) 176, 209, 446
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 532
NlaIII CATG 5 cut(s) 128, 192, 310, 712, 733
NlaIV GGNNCC 3 cut(s) 196, 323, 324
NmuCI GTSAC 3 cut(s) 96, 373, 542
NspI RCATGY 1 cut(s) 712
PciI ACATGT 1 cut(s) 708
PfeI GAWTC 3 cut(s) 364, 385, 584
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 2 cut(s) 496, 703
PpsI GAGTC 2 cut(s) 496, 703
Ppu21I YACGTR 1 cut(s) 101
PscI ACATGT 1 cut(s) 708
PspN4I GGNNCC 3 cut(s) 196, 323, 324
PspOMI GGGCCC 1 cut(s) 322
PspPI GGNCC 5 cut(s) 322, 323, 338, 443, 608
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
RseI CAYNNNNRTG 2 cut(s) 129, 561
SaqAI TTAA 3 cut(s) 602, 657, 817
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 5 cut(s) 322, 323, 338, 443, 608
SchI GAGTC 2 cut(s) 497, 704
SduI GDGCHC 2 cut(s) 197, 326
SfaNI GCATC 1 cut(s) 734
SinI GGWCC 3 cut(s) 338, 443, 608
SmiMI CAYNNNNRTG 2 cut(s) 129, 561
Sse9I AATT 2 cut(s) 103, 499
SspMI CTAG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 373, 647, 777
TaiI ACGT 2 cut(s) 103, 544
TaqI TCGA 2 cut(s) 119, 491
TasI AATT 2 cut(s) 103, 499
TatI WGTACW 1 cut(s) 759
TfiI GAWTC 3 cut(s) 364, 385, 584
Tru1I TTAA 3 cut(s) 602, 657, 817
Tru9I TTAA 3 cut(s) 602, 657, 817
TscAI CASTG 2 cut(s) 308, 382
TseFI GTSAC 3 cut(s) 96, 373, 542
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 3 cut(s) 96, 373, 542
TspDTI ATGAA 5 cut(s) 7, 173, 238, 323, 734
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 2 cut(s) 308, 382
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 3 cut(s) 338, 443, 608
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 2 cut(s) 220, 354
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.