pycom01g05570

Protein SCO1 homolog 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012218
Physical Location & Seq
Reverse (-)
5390699 .. 5395746
5048 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05570.1

Sequence Viewer

Length: 819 bp
ATGCCCTTTCCTCGGTTCTTTTCCTTCTCGTCCAAACAACGCTCACTGGAGGCTCTCAATCTAATTCGGAGGTCTGGCTTCTCTAAGAAAATTCAGTCACGTAATTATGCCAAGTCATCGAACCATGCTAATGGGAAGACAGATGTTAGACCTCCTATGAATGTAGAAACACCACCGGCTTCTCGCTCATGGGGCAACTTTGTTATTCCGGTTGCTGGTATACTAGGATTTGCTGGTATCGCAACTTTCATTCGCTATAACGATGAGAGGAGAGTAACTTTGAAAGGCCAGGGTAACAACCAGTGCATGAACAATGTCAGGGGCCCAATAATCGGTGGTCCATTCACTTTAGTAGACACAGAGAATCACACGGTCACTGAACGGAATCTATTAGGAAACTGGGTTCTTCTCTACTTTGGATATACTTCTTCTCCTGATGTTGGACCGGAGCAAATCCAGATGATGGCCAAGACGATAAACATATTAGAGTCGAGATATAATTTGAAGGGTCTACCGGTATTTGTTACACTTGATCCAGAACGTGACAACCCTTCTCATCTTCGTGCCTACCTCAAAGAGTTTGATTCAAGGATTGTGGGGTTAACTGGACCTGTATCAGCTATAAGGCAGATAGCTCAGGAATACCGTGCTTATTTTAAGAAGGTTGAAGAAGACGGAGATGACTATCTCGTTGAGTCTTCCCACAACATGTATTTGATGAACCCAAACATGGAAGTCGTGAGATGCTTTGGTGTAGAGTACAATGCAGAAGAACTGTCAGAAGCAATAGTAAAGGAACTGAAAAGAACCTCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCO1-SenC

Protein Analysis

273

Amino Acids

30.8

Weight (kDa)

8.97

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCO1-SenC PF02630 112 - 245 6.6e-41 SCO1/SenC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39740
fragaria_vesca FvH4_1g21130 FvH4_1g21130
malus_domestica MD01G1027600.v1.1
prunus_persica Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1
pyrus_communis pycom01g05570
rosa_chinensis RchiOBHm_Chr2g0114911
rosa_laevigata RLG00000018134
rosa_multiflora Rmu_sc0002764.1_g000020
rosa_roxburghii Rroxscaffold_2G00130440
rosa_rugosa Rorug02G0191700
rosa_samantha Rh2AG250500 Rh2BG259900 Rh2CG254700 Rh2DG258600
rosa_wichuraiana Rw2G019520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 463
AccI GTMKAC 3 cut(s) 220, 354, 511
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 90
AfaI GTAC 1 cut(s) 761
AfiI CCNNNNNNNGG 6 cut(s) 12, 215, 332, 440, 463, 730
AflIII ACRYGT 1 cut(s) 708
AgeI ACCGGT 1 cut(s) 514
AgsI TTSAA 4 cut(s) 283, 505, 588, 668
AjnI CCWGG 1 cut(s) 288
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 2 cut(s) 620, 635
AluI AGCT 2 cut(s) 620, 635
AlwI GGATC 1 cut(s) 527
AoxI GGCC 3 cut(s) 286, 322, 465
ApaI GGGCCC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 90
AsiGI ACCGGT 1 cut(s) 514
AspS9I GGNCC 5 cut(s) 322, 323, 338, 443, 608
AvaII GGWCC 3 cut(s) 338, 443, 608
BaeGI GKGCMC 1 cut(s) 326
BalI TGGCCA 1 cut(s) 467
BanII GRGCYC 1 cut(s) 326
BbsI GAAGAC 3 cut(s) 143, 678, 690
BccI CCATC 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 3 cut(s) 338, 443, 608
BmgT120I GGNCC 5 cut(s) 322, 323, 338, 443, 608
BmiI GGNNCC 2 cut(s) 323, 324
BmrFI CCNGG 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 734
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 3 cut(s) 143, 678, 690
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 636
BsaAI YACGTR 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 11, 289
BsaWI WCCGGW 3 cut(s) 208, 445, 514
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 215, 332, 440, 463, 730
Bse118I RCCGGY 2 cut(s) 175, 514
Bse1I ACTGG 4 cut(s) 51, 301, 404, 610
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 11, 289
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 6 cut(s) 12, 215, 332, 440, 463, 730
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 4 cut(s) 51, 301, 404, 610
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 326
BshFI GGCC 3 cut(s) 288, 324, 467
BshTI ACCGGT 1 cut(s) 514
BsiSI CCGG 4 cut(s) 176, 209, 446, 515
BslI CCNNNNNNNGG 6 cut(s) 12, 215, 332, 440, 463, 730
BsnI GGCC 3 cut(s) 288, 324, 467
Bsp120I GGGCCC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 532
BspANI GGCC 3 cut(s) 288, 324, 467
BspCNI CTCAG 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 323, 324
BspPI GGATC 1 cut(s) 527
BsrFI RCCGGY 2 cut(s) 175, 514
BsrI ACTGG 4 cut(s) 51, 301, 404, 610
BssAI RCCGGY 2 cut(s) 175, 514
BssECI CCNNGG 2 cut(s) 11, 289
BssMI GATC 1 cut(s) 532
BssNAI GTATAC 1 cut(s) 221
Bst1107I GTATAC 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 3 cut(s) 373, 647, 777
BstBAI YACGTR 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 84, 636
BstKTI GATC 1 cut(s) 535
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 2 cut(s) 192, 239
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 326
BstV2I GAAGAC 3 cut(s) 143, 678, 690
BstXI CCANNNNNNTGG 1 cut(s) 131
BstZ17I GTATAC 1 cut(s) 221
BsuRI GGCC 3 cut(s) 288, 324, 467
BtsIMutI CAGTG 3 cut(s) 44, 308, 375
Cfr10I RCCGGY 2 cut(s) 175, 514
Cfr13I GGNCC 5 cut(s) 322, 323, 338, 443, 608
Csp6I GTAC 1 cut(s) 760
CspAI ACCGGT 1 cut(s) 514
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 5 cut(s) 125, 189, 307, 709, 730
CviJI RGCY 8 cut(s) 53, 78, 179, 288, 324, 467, 620, 635
CviKI_1 RGCY 8 cut(s) 53, 78, 179, 288, 324, 467, 620, 635
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 2 cut(s) 84, 636
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 3 cut(s) 338, 443, 608
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 326
FaeI CATG 5 cut(s) 128, 192, 310, 712, 733
FatI CATG 5 cut(s) 124, 188, 306, 708, 729
FblI GTMKAC 3 cut(s) 220, 354, 511
FriOI GRGCYC 1 cut(s) 326
FspBI CTAG 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 3 cut(s) 288, 324, 467
HapII CCGG 4 cut(s) 176, 209, 446, 515
Hin1II CATG 5 cut(s) 128, 192, 310, 712, 733
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HinfI GANTC 5 cut(s) 364, 385, 488, 584, 695
HpaI GTTAAC 1 cut(s) 603
HpaII CCGG 4 cut(s) 176, 209, 446, 515
Hpy166II GTNNAC 4 cut(s) 221, 355, 512, 603
Hpy188I TCNGA 2 cut(s) 69, 781
Hpy188III TCNNGA 6 cut(s) 434, 457, 492, 536, 638, 739
Hpy8I GTNNAC 4 cut(s) 221, 355, 512, 603
HpyAV CCTTC 4 cut(s) 34, 499, 561, 655
HpyCH4III ACNGT 3 cut(s) 373, 647, 777
HpyCH4IV ACGT 2 cut(s) 100, 541
HpyCH4V TGCA 2 cut(s) 306, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 239
HpyF3I CTNAG 2 cut(s) 84, 636
HpySE526I ACGT 2 cut(s) 100, 541
Hsp92II CATG 5 cut(s) 128, 192, 310, 712, 733
KspAI GTTAAC 1 cut(s) 603
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 1 cut(s) 448
LweI GCATC 1 cut(s) 734
MaeI CTAG 1 cut(s) 224
MaeII ACGT 2 cut(s) 100, 541
MaeIII GTNAC 6 cut(s) 96, 274, 293, 373, 523, 542
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 8 cut(s) 148, 398, 420, 551, 680, 683, 690, 782
MhlI GDGCHC 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 4 cut(s) 63, 90, 103, 499
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 2 cut(s) 497, 704
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 6 cut(s) 21, 43, 63, 162, 261, 581
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MseI TTAA 3 cut(s) 602, 657, 817
MslI CAYNNNNRTG 2 cut(s) 129, 561
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 4 cut(s) 176, 209, 446, 515
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 192, 239
NdeII GATC 1 cut(s) 532
NlaIII CATG 5 cut(s) 128, 192, 310, 712, 733
NlaIV GGNNCC 2 cut(s) 323, 324
NmuCI GTSAC 3 cut(s) 96, 373, 542
NspI RCATGY 1 cut(s) 712
PciI ACATGT 1 cut(s) 708
PfeI GAWTC 3 cut(s) 364, 385, 584
PflMI CCANNNNNTGG 1 cut(s) 463
PinAI ACCGGT 1 cut(s) 514
PleI GAGTC 2 cut(s) 496, 703
PpsI GAGTC 2 cut(s) 496, 703
Ppu21I YACGTR 1 cut(s) 101
PscI ACATGT 1 cut(s) 708
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 323, 324
PspOMI GGGCCC 1 cut(s) 322
PspPI GGNCC 5 cut(s) 322, 323, 338, 443, 608
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
RseI CAYNNNNRTG 2 cut(s) 129, 561
SaqAI TTAA 3 cut(s) 602, 657, 817
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 5 cut(s) 322, 323, 338, 443, 608
SchI GAGTC 2 cut(s) 497, 704
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 1 cut(s) 734
SinI GGWCC 3 cut(s) 338, 443, 608
SmiMI CAYNNNNRTG 2 cut(s) 129, 561
Sse9I AATT 4 cut(s) 63, 90, 103, 499
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 373, 647, 777
TaiI ACGT 2 cut(s) 103, 544
TaqI TCGA 2 cut(s) 119, 491
TasI AATT 4 cut(s) 63, 90, 103, 499
TatI WGTACW 1 cut(s) 759
TfiI GAWTC 3 cut(s) 364, 385, 584
Tru1I TTAA 3 cut(s) 602, 657, 817
Tru9I TTAA 3 cut(s) 602, 657, 817
TscAI CASTG 3 cut(s) 51, 308, 382
TseFI GTSAC 3 cut(s) 96, 373, 542
Tsp45I GTSAC 3 cut(s) 96, 373, 542
TspDTI ATGAA 4 cut(s) 173, 238, 323, 734
TspGWI ACGGA 2 cut(s) 397, 690
TspRI CASTG 3 cut(s) 51, 308, 382
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 3 cut(s) 338, 443, 608
XapI RAATTY 1 cut(s) 90
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 3 cut(s) 220, 354, 511
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.