Rh2BG259900

Protein SCO1 homolog 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012218
Physical Location & Seq
Forward (+)
27572979 .. 27576514
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG259900.1

Sequence Viewer

Length: 618 bp
ATGCCCATTTCTCGCTTCTGTTTCTTTTCCTTCAAACACCGTTCAAAGGAGGCTTTAAATCTACTCAGGAGGTCTGCCCCATCCAAGAGAATTCAGTCTCGAAATTATGCAAATTCATCGAAACGTGCTAGTGGGAGAACAGATATCAGTACTTCAACACCAGTAGATACACCACCTTCTCCCGCTCGGGGTTCTTTCGTCCTTCCGGCTGCTACTCTACTAGGATTTGCTGGGTTGGCAGCTTTCATTCATTATAATGATGAGAGGAGAGTAGTAACGAAAGGCCAGGATAACTGCTCGTGTGTAAATAATCTCAAGGGACCAATAATTGGTGGTCCATTTACTTTAGAGGACACAGAGAATCGTACCGTTACTGAGAAAAATCTTCGCGGCAACTGGGCGGTACTCTATTTTGGATATACTTCCTCTCCTGATGTTGGACCAGAGCAAGTCCAGATTATGGCCAAGGCCATAAACATTCTAGAATCAAGACATAATCTCAAAGTTCTACCAGTATTTGTTACAATTGATCCACAACGTGATACCCCTTCTCAACTGCGTGCCTACCTTAAAGGTTCCATTCTCCTTCTGTTCAATATTTCTTATGTTATAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCO1-SenC

Protein Analysis

205

Amino Acids

22.76

Weight (kDa)

9.81

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCO1-SenC PF02630 111 - 191 2.7e-23 SCO1/SenC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39740
fragaria_vesca FvH4_1g21130 FvH4_1g21130
malus_domestica MD01G1027600.v1.1
prunus_persica Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1
pyrus_communis pycom01g05570
rosa_chinensis RchiOBHm_Chr2g0114911
rosa_laevigata RLG00000018134
rosa_multiflora Rmu_sc0002764.1_g000020
rosa_roxburghii Rroxscaffold_2G00130440
rosa_rugosa Rorug02G0191700
rosa_samantha Rh2AG250500 Rh2BG259900 Rh2CG254700 Rh2DG258600
rosa_wichuraiana Rw2G019520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccB7I CCANNNNNTGG 2 cut(s) 329, 460
AccBSI CCGCTC 1 cut(s) 185
AccII CGCG 1 cut(s) 390
AciI CCGC 3 cut(s) 183, 390, 401
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 2 cut(s) 90, 112
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 3 cut(s) 151, 367, 405
AfiI CCNNNNNNNGG 5 cut(s) 46, 188, 329, 437, 460
AgsI TTSAA 4 cut(s) 34, 45, 156, 595
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 3 cut(s) 283, 462, 468
ApeKI GCWGC 2 cut(s) 209, 239
ApoI RAATTY 2 cut(s) 90, 112
AspS9I GGNCC 3 cut(s) 320, 335, 440
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 3 cut(s) 320, 335, 440
BalI TGGCCA 1 cut(s) 464
BauI CACGAG 1 cut(s) 298
BbvI GCAGC 2 cut(s) 196, 251
BccI CCATC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 3 cut(s) 129, 221, 482
BisI GCNGC 3 cut(s) 210, 240, 391
BlsI GCNGC 3 cut(s) 211, 241, 392
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 3 cut(s) 320, 335, 440
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 3 cut(s) 320, 335, 440
BmiI GGNNCC 2 cut(s) 321, 577
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 188, 329, 437, 460
Bse1I ACTGG 3 cut(s) 161, 401, 512
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 5 cut(s) 46, 188, 329, 437, 460
BseMII CTCAG 2 cut(s) 79, 366
BseNI ACTGG 3 cut(s) 161, 401, 512
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 196, 251
BseYI CCCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 3 cut(s) 285, 464, 470
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 5 cut(s) 46, 188, 329, 437, 460
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 3 cut(s) 285, 464, 470
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 1 cut(s) 529
BspACI CCGC 3 cut(s) 183, 390, 401
BspANI GGCC 3 cut(s) 285, 464, 470
BspCNI CTCAG 2 cut(s) 78, 367
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 321, 577
BspPI GGATC 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 185
BsrI ACTGG 3 cut(s) 161, 401, 512
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 1 cut(s) 529
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 41, 370
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 2 cut(s) 65, 375
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 390
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 196, 251
BsuRI GGCC 3 cut(s) 285, 464, 470
BtsCI GGATG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 561
Cfr13I GGNCC 3 cut(s) 320, 335, 440
Csp6I GTAC 3 cut(s) 150, 366, 404
CviJI RGCY 6 cut(s) 53, 209, 242, 285, 464, 470
CviKI_1 RGCY 6 cut(s) 53, 209, 242, 285, 464, 470
CviQI GTAC 3 cut(s) 150, 366, 404
DdeI CTNAG 2 cut(s) 65, 375
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
DraI TTTAAA 1 cut(s) 57
DraIII CACNNNGTG 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 465
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 3 cut(s) 320, 335, 440
Eco88I CYCGRG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaiI YATR 8 cut(s) 108, 255, 420, 461, 473, 495, 606, 611
FaqI GGGAC 1 cut(s) 333
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 210, 240, 391
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 3 cut(s) 210, 240, 391
FspBI CTAG 3 cut(s) 129, 221, 482
GluI GCNGC 3 cut(s) 210, 240, 391
GsaI CCCAGC 1 cut(s) 234
HaeIII GGCC 3 cut(s) 285, 464, 470
HapII CCGG 1 cut(s) 206
HinfI GANTC 2 cut(s) 361, 485
HpaII CCGG 1 cut(s) 206
Hpy188III TCNNGA 6 cut(s) 67, 99, 431, 454, 482, 489
HpyAV CCTTC 5 cut(s) 40, 186, 212, 558, 596
HpyCH4III ACNGT 2 cut(s) 41, 370
HpyCH4IV ACGT 2 cut(s) 124, 538
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 65, 375
HpySE526I ACGT 2 cut(s) 124, 538
Kzo9I GATC 1 cut(s) 529
Lsp1109I GCAGC 2 cut(s) 196, 251
MaeI CTAG 3 cut(s) 129, 221, 482
MaeII ACGT 2 cut(s) 124, 538
MaeIII GTNAC 3 cut(s) 274, 370, 520
MalI GATC 1 cut(s) 531
MbiI CCGCTC 1 cut(s) 185
MboI GATC 1 cut(s) 529
MboII GAAGA 1 cut(s) 377
MfeI CAATTG 1 cut(s) 525
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 5 cut(s) 90, 103, 112, 327, 525
MluNI TGGCCA 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 5 cut(s) 43, 63, 258, 343, 436
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 2 cut(s) 56, 570
MslI CAYNNNNRTG 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 1 cut(s) 529
NlaIV GGNNCC 2 cut(s) 321, 577
PfeI GAWTC 2 cut(s) 361, 485
PflMI CCANNNNNTGG 2 cut(s) 329, 460
PkrI GCNGC 3 cut(s) 211, 241, 392
PsiI TTATAA 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 321, 577
PspPI GGNCC 3 cut(s) 320, 335, 440
RsaI GTAC 3 cut(s) 151, 367, 405
RsaNI GTAC 3 cut(s) 150, 366, 404
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 56, 570
SatI GCNGC 3 cut(s) 210, 240, 391
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 3 cut(s) 320, 335, 440
ScaI AGTACT 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 287
SetI ASST 7 cut(s) 74, 127, 178, 244, 541, 570, 577
SinI GGWCC 3 cut(s) 320, 335, 440
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 5 cut(s) 90, 103, 112, 327, 525
SsiI CCGC 3 cut(s) 183, 390, 401
SspI AATATT 1 cut(s) 598
SspMI CTAG 3 cut(s) 129, 221, 482
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 41, 370
TaiI ACGT 2 cut(s) 127, 541
TaqI TCGA 2 cut(s) 100, 119
TasI AATT 5 cut(s) 90, 103, 112, 327, 525
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 2 cut(s) 361, 485
Tru1I TTAA 2 cut(s) 56, 570
Tru9I TTAA 2 cut(s) 56, 570
TseI GCWGC 2 cut(s) 209, 239
TspDTI ATGAA 3 cut(s) 105, 235, 239
Van91I CCANNNNNTGG 2 cut(s) 329, 460
VpaK11BI GGWCC 3 cut(s) 320, 335, 440
XapI RAATTY 2 cut(s) 90, 112
XbaI TCTAGA 1 cut(s) 481
XspI CTAG 3 cut(s) 129, 221, 482
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.