Rorug02G0191700

Protein SCO1 homolog 2

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
17898205 .. 17901756
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0191700.1

Sequence Viewer

Length: 1164 bp
ATGGCAGAAACAGAAGACCTACCGGAAGAGATTATAGTGAATATCTTTACTTGGTTACCCCTCAAGTCCTTGATCCGATTCACCTCCGTTTCGAAACGTCTGCGTTCCATTATATTGTCCGATCCCAAATTCGCCCAATCCCAACTTAAAGCAGCTCGTCAGCAGAAAACCCTCAGCCGCAGACTCCTCGTCTCCACCAGCGCCCCTCGACTCGAGCTCGACTCCCTAGACTTGGATACGCCGTCGTTTGGAGAGCCTTCCTCCGTTAGAAAGCTCAGCTTCCCTTTCCCGCCACGACCGGGCGATTATGTCACGCTACTTGGCTCCTGCAATGGTCTGGTATTTGTAGCTGTTGGTGAGAAATTGTTTTATATCTGGAACCCGTTCATTGGATTCTTGAAGCAATTACCCGATCCAGGTTTTCCCTTGGATGAAAATGCGCTAGCCTATTATGGTGCTGGCTATTTATCCGCCACCGATGACTACAAAGTTTTGGTAGCCTCCTATCGCATTGGTGAATGGGAGATAGAGGTCGAGATGTTCTCATCGACAACTCACATATGGCAGAGGATTGAATCCCCTCGCCTGCGCATCACTCTTGAACTCGATCTTCTGGGTACTCTTTCGAATGATGCACTTCATTGGCTAAAATACGACGACGACGACGAGGAGCATGAAATAGTTTCTTTTGACTTGGAAGACGAGGTGTTCCGGAGAATGCCACTGCCTAATTTCGAACATGATGGTAAGACTTTCTGCAAGCTTGGGGTTTGTGGAGGGTGCCTGTGTGTATCGCGTTATCCGGATGGTGCTTTTGACTCTATTGATTTCTGGGTCATGAGAGAATATGGCGTCAGTGGCTCATGGATTATGCTCTTTAGCTTAAAGCCGCCTGAGTTGCCCTTGTATTCCAGAGAATTCTTGGTTGTGGAAAGTTGTACAGTTGCCGCGGATTGGACTGGCGAGGGGTTCGAGTTGATAAGGATTGATCATAAAGAAGACGAGAAGCTTGGGCGGTATATGGTTAAGGGGGTTCGCATGTGTATGGTTGAATATGAAGAGAGTCTACTTTGGATTAGTGGTTATCATTCAGGAAAAAGAGATAGAGCAGGTCAAGATACTCGAAACCCATCAGAAGGCCTCAGGAAGCTGAAATGGAAGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

387

Amino Acids

44.36

Weight (kDa)

5.06

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 41 2.3e-08 F-box-like
F-box PF00646 6 - 43 5.8e-10 F-box domain
FBA_3 PF08268 88 - 291 6.4e-13 F-box associated beta propeller domain
FBA_1 PF07734 107 - 316 5.8e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012218)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 590
Acc36I ACCTGC 1 cut(s) 1100
AccB1I GGYRCC 1 cut(s) 780
AccI GTMKAC 1 cut(s) 1066
AccII CGCG 2 cut(s) 796, 950
AccIII TCCGGA 2 cut(s) 711, 802
AciI CCGC 7 cut(s) 178, 290, 471, 890, 948, 950, 1015
AclWI GGATC 3 cut(s) 67, 116, 407
AcsI RAATTY 2 cut(s) 128, 917
AcyI GRCGYC 1 cut(s) 852
AfaI GTAC 2 cut(s) 619, 940
AfiI CCNNNNNNNGG 7 cut(s) 232, 248, 299, 389, 416, 954, 1136
AgsI TTSAA 4 cut(s) 400, 575, 602, 1052
AhdI GACNNNNNGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 9 cut(s) 155, 217, 274, 279, 350, 763, 882, 1009, 1150
AluI AGCT 9 cut(s) 155, 217, 274, 279, 350, 763, 882, 1009, 1150
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 3 cut(s) 67, 116, 407
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 2 cut(s) 711, 802
AoxI GGCC 1 cut(s) 1138
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 128, 917
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 3 cut(s) 203, 442, 591
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 73, 368, 527
AsuII TTCGAA 3 cut(s) 92, 626, 735
AsuNHI GCTAGC 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 1142
BanI GGYRCC 1 cut(s) 780
BanII GRGCYC 1 cut(s) 219
BarI GAAGNNNNNNTAC 2 cut(s) 1050, 1082
BbsI GAAGAC 3 cut(s) 21, 705, 1005
Bbv12I GWGCWC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 164
BccI CCATC 3 cut(s) 737, 800, 1138
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 4 cut(s) 82, 116, 169, 203
BciT130I CCWGG 1 cut(s) 417
BciVI GTATCC 1 cut(s) 229
BclI TGATCA 1 cut(s) 988
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 227, 443
BfoI RGCGCY 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 1100
BfuI GTATCC 1 cut(s) 229
BisI GCNGC 4 cut(s) 153, 178, 890, 948
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 4 cut(s) 154, 179, 891, 949
Bme1390I CCNGG 2 cut(s) 300, 417
BmeRI GACNNNNNGTC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 212
BmiI GGNNCC 3 cut(s) 325, 380, 782
BmrFI CCNGG 2 cut(s) 300, 417
BmsI GCATC 2 cut(s) 600, 622
BmtI GCTAGC 1 cut(s) 446
BpiI GAAGAC 3 cut(s) 21, 705, 1005
BplI GAGNNNNNCTC 6 cut(s) 206, 238, 245, 277, 527, 559
Bpu10I CCTNAGC 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 275
Bpu14I TTCGAA 3 cut(s) 92, 626, 735
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 426, 948
BsaWI WCCGGW 3 cut(s) 22, 711, 802
Bsc4I CCNNNNNNNGG 7 cut(s) 232, 248, 299, 389, 416, 954, 1136
Bse1I ACTGG 1 cut(s) 964
Bse21I CCTNAGG 1 cut(s) 1142
Bse3DI GCAATG 1 cut(s) 337
BseAI TCCGGA 2 cut(s) 711, 802
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 426, 948
BseGI GGATG 2 cut(s) 436, 811
BseLI CCNNNNNNNGG 7 cut(s) 232, 248, 299, 389, 416, 954, 1136
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 4 cut(s) 187, 289, 885, 1156
BseNI ACTGG 1 cut(s) 964
BseRI GAGGAG 2 cut(s) 176, 683
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 2 cut(s) 796, 950
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 1140
BshNI GGYRCC 1 cut(s) 780
BsiEI CGRYCG 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 4 cut(s) 23, 299, 712, 803
BslI CCNNNNNNNGG 7 cut(s) 232, 248, 299, 389, 416, 954, 1136
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 1 cut(s) 1140
BsoBI CYCGRG 1 cut(s) 212
Bsp119I TTCGAA 3 cut(s) 92, 626, 735
Bsp1286I GDGCHC 1 cut(s) 219
Bsp13I TCCGGA 2 cut(s) 711, 802
Bsp1407I TGTACA 1 cut(s) 938
Bsp143I GATC 5 cut(s) 72, 121, 412, 607, 988
Bsp1720I GCTNAGC 1 cut(s) 275
BspACI CCGC 7 cut(s) 178, 290, 471, 890, 948, 950, 1015
BspANI GGCC 1 cut(s) 1140
BspCNI CTCAG 4 cut(s) 186, 288, 886, 1155
BspEI TCCGGA 2 cut(s) 711, 802
BspFNI CGCG 2 cut(s) 796, 950
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 3 cut(s) 325, 380, 782
BspMI ACCTGC 1 cut(s) 1100
BspOI GCTAGC 1 cut(s) 446
BspPI GGATC 3 cut(s) 67, 116, 407
BspT104I TTCGAA 3 cut(s) 92, 626, 735
BspT107I GGYRCC 1 cut(s) 780
BsrDI GCAATG 1 cut(s) 337
BsrGI TGTACA 1 cut(s) 938
BsrI ACTGG 1 cut(s) 964
BssECI CCNNGG 2 cut(s) 426, 948
BssMI GATC 5 cut(s) 72, 121, 412, 607, 988
BssNI GRCGYC 1 cut(s) 852
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 943
Bst6I CTCTTC 2 cut(s) 21, 1053
BstACI GRCGYC 1 cut(s) 852
BstAUI TGTACA 1 cut(s) 938
BstBI TTCGAA 3 cut(s) 92, 626, 735
BstC8I GCNNGC 4 cut(s) 444, 460, 587, 761
BstDEI CTNAG 4 cut(s) 173, 275, 894, 1142
BstDSI CCRYGG 1 cut(s) 948
BstEII GGTNACC 1 cut(s) 54
BstF5I GGATG 2 cut(s) 436, 811
BstFNI CGCG 2 cut(s) 796, 950
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 3 cut(s) 203, 442, 591
BstKTI GATC 5 cut(s) 75, 124, 415, 610, 991
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 5 cut(s) 72, 121, 412, 607, 988
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 858, 898
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 1042
BstPI GGTNACC 1 cut(s) 54
BstSCI CCNGG 2 cut(s) 298, 415
BstUI CGCG 2 cut(s) 796, 950
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 3 cut(s) 21, 705, 1005
Bsu36I CCTNAGG 1 cut(s) 1142
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 1 cut(s) 1140
BtgI CCRYGG 1 cut(s) 948
BtsCI GGATG 2 cut(s) 436, 811
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 2 cut(s) 722, 862
BveI ACCTGC 1 cut(s) 1100
Cac8I GCNNGC 4 cut(s) 444, 460, 587, 761
CciI TCATGA 1 cut(s) 837
CfoI GCGC 3 cut(s) 203, 442, 591
Cfr42I CCGCGG 1 cut(s) 951
CseI GACGC 1 cut(s) 841
Csp6I GTAC 2 cut(s) 618, 939
CviAII CATG 5 cut(s) 674, 740, 838, 864, 1039
CviQI GTAC 2 cut(s) 618, 939
DdeI CTNAG 4 cut(s) 173, 275, 894, 1142
DpnI GATC 5 cut(s) 74, 123, 414, 609, 990
DpnII GATC 5 cut(s) 72, 121, 412, 607, 988
DriI GACNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 21, 1053
Eam1105I GACNNNNNGTC 1 cut(s) 188
EarI CTCTTC 2 cut(s) 21, 1053
EciI GGCGGA 1 cut(s) 460
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 1140
Eco24I GRGCYC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 1142
Eco88I CYCGRG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 917
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 5 cut(s) 677, 743, 841, 867, 1042
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 5 cut(s) 673, 739, 837, 863, 1038
FauI CCCGC 1 cut(s) 297
FauNDI CATATG 1 cut(s) 560
FbaI TGATCA 1 cut(s) 988
FblI GTMKAC 1 cut(s) 1066
Fnu4HI GCNGC 4 cut(s) 153, 178, 890, 948
FokI GGATG 2 cut(s) 443, 818
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 4 cut(s) 153, 178, 890, 948
FspBI CTAG 2 cut(s) 227, 443
FspI TGCGCA 1 cut(s) 590
GlaI GCGC 3 cut(s) 202, 441, 590
GluI GCNGC 4 cut(s) 153, 178, 890, 948
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 1140
HapII CCGG 4 cut(s) 23, 299, 712, 803
HgaI GACGC 1 cut(s) 841
HhaI GCGC 3 cut(s) 203, 442, 591
Hin1I GRCGYC 1 cut(s) 852
Hin1II CATG 5 cut(s) 677, 743, 841, 867, 1042
Hin6I GCGC 3 cut(s) 201, 440, 589
HinP1I GCGC 3 cut(s) 201, 440, 589
HindIII AAGCTT 2 cut(s) 761, 1007
HinfI GANTC 8 cut(s) 78, 183, 210, 221, 393, 575, 818, 1063
HpaII CCGG 4 cut(s) 23, 299, 712, 803
HphI GGTGA 3 cut(s) 73, 368, 527
Hpy166II GTNNAC 1 cut(s) 1067
Hpy188I TCNGA 3 cut(s) 77, 121, 1135
Hpy8I GTNNAC 1 cut(s) 1067
Hpy99I CGWCG 5 cut(s) 247, 659, 662, 665, 668
HpyAV CCTTC 2 cut(s) 267, 1130
HpyCH4III ACNGT 1 cut(s) 943
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 330, 635, 759
HpyF10VI GCNNNNNNNGC 2 cut(s) 858, 898
HpyF3I CTNAG 4 cut(s) 173, 275, 894, 1142
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 852
Hsp92II CATG 5 cut(s) 677, 743, 841, 867, 1042
HspAI GCGC 3 cut(s) 201, 440, 589
Kpn2I TCCGGA 2 cut(s) 711, 802
Ksp22I TGATCA 1 cut(s) 988
KspI CCGCGG 1 cut(s) 951
Kzo9I GATC 5 cut(s) 72, 121, 412, 607, 988
LmnI GCTCC 2 cut(s) 329, 670
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 2 cut(s) 600, 622
MaeI CTAG 2 cut(s) 227, 443
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 54, 310
MalI GATC 5 cut(s) 74, 123, 414, 609, 990
MboI GATC 5 cut(s) 72, 121, 412, 607, 988
MboII GAAGA 6 cut(s) 26, 38, 602, 710, 1010, 1070
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 5 cut(s) 128, 362, 404, 730, 917
MlyI GAGTC 5 cut(s) 177, 204, 215, 812, 1072
MroI TCCGGA 2 cut(s) 711, 802
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 3 cut(s) 147, 884, 1026
MslI CAYNNNNRTG 1 cut(s) 1043
MspA1I CMGCKG 1 cut(s) 950
MspI CCGG 4 cut(s) 23, 299, 712, 803
MspR9I CCNGG 2 cut(s) 300, 417
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 2 cut(s) 796, 950
MwoI GCNNNNNNNGC 2 cut(s) 858, 898
NciI CCSGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 560
NdeII GATC 5 cut(s) 72, 121, 412, 607, 988
NheI GCTAGC 1 cut(s) 442
NlaIII CATG 5 cut(s) 677, 743, 841, 867, 1042
NlaIV GGNNCC 3 cut(s) 325, 380, 782
NmuCI GTSAC 1 cut(s) 310
NsbI TGCGCA 1 cut(s) 590
NspI RCATGY 1 cut(s) 1042
NspV TTCGAA 3 cut(s) 92, 626, 735
PaeR7I CTCGAG 1 cut(s) 212
PagI TCATGA 1 cut(s) 837
PceI AGGCCT 1 cut(s) 1140
PcsI WCGNNNNNNNCGW 2 cut(s) 660, 663
PctI GAATGC 1 cut(s) 723
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 3 cut(s) 78, 393, 575
PkrI GCNGC 4 cut(s) 154, 179, 891, 949
PleI GAGTC 5 cut(s) 177, 204, 215, 812, 1071
PpsI GAGTC 5 cut(s) 177, 204, 215, 812, 1071
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 415
PspEI GGTNACC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 3 cut(s) 325, 380, 782
PspXI VCTCGAGB 1 cut(s) 212
RsaI GTAC 2 cut(s) 619, 940
RsaNI GTAC 2 cut(s) 618, 939
RseI CAYNNNNRTG 1 cut(s) 1043
SacI GAGCTC 1 cut(s) 219
SacII CCGCGG 1 cut(s) 951
SaqAI TTAA 3 cut(s) 147, 884, 1026
SatI GCNGC 4 cut(s) 153, 178, 890, 948
Sau3AI GATC 5 cut(s) 72, 121, 412, 607, 988
SchI GAGTC 5 cut(s) 177, 204, 215, 812, 1072
ScrFI CCNGG 2 cut(s) 300, 417
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 2 cut(s) 600, 622
Sfr274I CTCGAG 1 cut(s) 212
Sfr303I CCGCGG 1 cut(s) 951
SfuI TTCGAA 3 cut(s) 92, 626, 735
SgrBI CCGCGG 1 cut(s) 951
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 1043
SmlI CTYRAG 2 cut(s) 62, 212
SmoI CTYRAG 2 cut(s) 62, 212
Sse9I AATT 5 cut(s) 128, 362, 404, 730, 917
SseBI AGGCCT 1 cut(s) 1140
SsiI CCGC 7 cut(s) 178, 290, 471, 890, 948, 950, 1015
SspMI CTAG 2 cut(s) 227, 443
SstI GAGCTC 1 cut(s) 219
StuI AGGCCT 1 cut(s) 1140
StyD4I CCNGG 2 cut(s) 298, 415
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 943
TaiI ACGT 1 cut(s) 100
TasI AATT 5 cut(s) 128, 362, 404, 730, 917
TatI WGTACW 1 cut(s) 938
TauI GCSGC 3 cut(s) 180, 892, 950
TfiI GAWTC 3 cut(s) 78, 393, 575
Tru1I TTAA 3 cut(s) 147, 884, 1026
Tru9I TTAA 3 cut(s) 147, 884, 1026
TscAI CASTG 2 cut(s) 729, 862
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 5 cut(s) 376, 447, 629, 690, 1071
TspGWI ACGGA 2 cut(s) 76, 253
TspRI CASTG 2 cut(s) 729, 862
XapI RAATTY 2 cut(s) 128, 917
XceI RCATGY 1 cut(s) 1042
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 1066
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 2 cut(s) 227, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.