RLG00000018134

Protein SCO1 homolog 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012218
Physical Location & Seq
Forward (+)
25699619 .. 25703149
3531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018134

Sequence Viewer

Length: 828 bp
ATGCCCATTTCTCGCTTCTGTTTCTTTTCCTTCAAACACCGCTCAAAGGAGGCTTTCAATCTACTCTGGAGGTCTGCCCCATCCAAGAGAATTCAGTCTCGAAATTATGCAAATTCATCGAAACGTGCTAGTGGGAGAACAGATATCAGTACTGCAACACCAGTAGATACACCACCTTCTCGCTCTCGGGGTTCTTTCGTCCTTCCGGCTGCTACTCTACTAGGATTTGCTGGGTTGGCAGCATTCATTCATTATAATGATGAGAGGAGAGTAGTAACGAAAGGCCAGGATAACTGCTCGTGTGTAAATAATCTCAAGGGACCTATAATTGGCGGTCCATTTACTTTAGAGGACACAGAGAATCGTACCGTTACTGAGAAAAATCTTCGAGGCAACTGGGCGGTACTCTATTTTGGATATACTTCCTCTCCTGATGTTGGACCAGAGCAAGTCCAGGTTATGGCCAAGGCCATAAACATTCTAGAATCAAGGCATAATCTCAAAGTTCTACCAGTATTTGTTACAATTGATCCACAACGTGATACCCCTTCTCAACTGCGTGCCTACCTTAAAGAGTTTGAATCAAACATTCTAGGGCTAACAGGACCTGTAACAGCTATAAGACAGATGGCTCAGGAATATCGTGTTTTTTTCAGAAAGATTGAAGAAGATGGGGATGATTATCTCGTTGAGTCTTCCCACAACATGTATTTGATGAGTCCAAACATGGAAGTTGTCAGATGCTTTGGTGTAGAGTACAATGCAGAGGAACTGTCAGAAGCAATACTAAAGGAGCTCAAGTCAAGAGAACCTCAACTTAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCO1-SenC

Protein Analysis

276

Amino Acids

31.08

Weight (kDa)

8.6

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCO1-SenC PF02630 111 - 244 1.9e-41 SCO1/SenC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39740
fragaria_vesca FvH4_1g21130 FvH4_1g21130
malus_domestica MD01G1027600.v1.1
prunus_persica Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1
pyrus_communis pycom01g05570
rosa_chinensis RchiOBHm_Chr2g0114911
rosa_laevigata RLG00000018134
rosa_multiflora Rmu_sc0002764.1_g000020
rosa_roxburghii Rroxscaffold_2G00130440
rosa_rugosa Rorug02G0191700
rosa_samantha Rh2AG250500 Rh2BG259900 Rh2CG254700 Rh2DG258600
rosa_wichuraiana Rw2G019520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 3 cut(s) 40, 333, 401
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 2 cut(s) 90, 112
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 4 cut(s) 151, 367, 405, 758
AfiI CCNNNNNNNGG 4 cut(s) 46, 329, 437, 460
AflII CTTAAG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 4 cut(s) 34, 58, 581, 665
AjnI CCWGG 2 cut(s) 285, 453
AluBI AGCT 2 cut(s) 617, 796
AluI AGCT 2 cut(s) 617, 796
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 524
AlwNI CAGNNNCTG 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 3 cut(s) 283, 462, 468
ApeKI GCWGC 2 cut(s) 209, 239
ApoI RAATTY 2 cut(s) 90, 112
AspS9I GGNCC 4 cut(s) 320, 335, 440, 605
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 4 cut(s) 320, 335, 440, 605
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 798
BauI CACGAG 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 2 cut(s) 196, 251
BccI CCATC 3 cut(s) 88, 622, 665
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 2 cut(s) 287, 455
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 4 cut(s) 129, 221, 482, 593
BfrI CTTAAG 1 cut(s) 818
BisI GCNGC 2 cut(s) 210, 240
BlsI GCNGC 2 cut(s) 211, 241
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 287, 455
Bme18I GGWCC 4 cut(s) 320, 335, 440, 605
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 4 cut(s) 320, 335, 440, 605
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 2 cut(s) 287, 455
BmrI ACTGGG 1 cut(s) 406
BmsI GCATC 1 cut(s) 731
BmuI ACTGGG 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 687
BpmI CTGGAG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 633
BpuEI CTTGAG 2 cut(s) 299, 782
BsaBI GATNNNNATC 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 4 cut(s) 412, 442, 785, 815
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 329, 437, 460
Bse1I ACTGG 3 cut(s) 161, 401, 512
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 2 cut(s) 287, 455
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 80, 682
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 4 cut(s) 46, 329, 437, 460
BseMII CTCAG 2 cut(s) 366, 647
BseNI ACTGG 3 cut(s) 161, 401, 512
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 196, 251
BseYI CCCAGC 1 cut(s) 230
BshFI GGCC 3 cut(s) 285, 464, 470
BsiHKAI GWGCWC 1 cut(s) 798
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 4 cut(s) 46, 329, 437, 460
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 3 cut(s) 285, 464, 470
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 798
Bsp143I GATC 1 cut(s) 529
BspACI CCGC 3 cut(s) 40, 333, 401
BspANI GGCC 3 cut(s) 285, 464, 470
BspCNI CTCAG 2 cut(s) 367, 646
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 524
BspTI CTTAAG 1 cut(s) 818
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 3 cut(s) 161, 401, 512
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 1 cut(s) 529
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 2 cut(s) 287, 455
Bst4CI ACNGT 2 cut(s) 370, 774
BstAFI CTTAAG 1 cut(s) 818
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 2 cut(s) 375, 633
BstF5I GGATG 2 cut(s) 80, 682
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 2 cut(s) 287, 455
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 2 cut(s) 285, 453
BstV1I GCAGC 2 cut(s) 196, 251
BstV2I GAAGAC 1 cut(s) 687
BsuRI GGCC 3 cut(s) 285, 464, 470
BtsCI GGATG 2 cut(s) 80, 682
Cac8I GCNNGC 1 cut(s) 561
CaiI CAGNNNCTG 1 cut(s) 608
Cfr13I GGNCC 4 cut(s) 320, 335, 440, 605
Csp6I GTAC 4 cut(s) 150, 366, 404, 757
CviAII CATG 2 cut(s) 706, 727
CviJI RGCY 9 cut(s) 53, 209, 285, 464, 470, 598, 617, 632, 796
CviKI_1 RGCY 9 cut(s) 53, 209, 285, 464, 470, 598, 617, 632, 796
CviQI GTAC 4 cut(s) 150, 366, 404, 757
DdeI CTNAG 2 cut(s) 375, 633
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
DraIII CACNNNGTG 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 462
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 798
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 4 cut(s) 320, 335, 440, 605
Eco53kI GAGCTC 1 cut(s) 796
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 796
EcoO109I RGGNCCY 2 cut(s) 320, 605
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 285, 453
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 709, 730
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 705, 726
Fnu4HI GCNGC 2 cut(s) 210, 240
FokI GGATG 2 cut(s) 67, 689
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 2 cut(s) 210, 240
FspBI CTAG 4 cut(s) 129, 221, 482, 593
GluI GCNGC 2 cut(s) 210, 240
GsaI CCCAGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 3 cut(s) 285, 464, 470
HapII CCGG 1 cut(s) 206
Hin1II CATG 2 cut(s) 709, 730
HinfI GANTC 5 cut(s) 361, 485, 581, 692, 718
HpaII CCGG 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 656, 740, 778
Hpy188III TCNNGA 6 cut(s) 67, 99, 431, 482, 635, 804
HpyAV CCTTC 4 cut(s) 40, 186, 212, 558
HpyCH4III ACNGT 2 cut(s) 370, 774
HpyCH4IV ACGT 2 cut(s) 124, 538
HpyCH4V TGCA 3 cut(s) 110, 155, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 375, 633
HpySE526I ACGT 2 cut(s) 124, 538
Hsp92II CATG 2 cut(s) 709, 730
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 793
Lsp1109I GCAGC 2 cut(s) 196, 251
LweI GCATC 1 cut(s) 731
MaeI CTAG 4 cut(s) 129, 221, 482, 593
MaeII ACGT 2 cut(s) 124, 538
MaeIII GTNAC 4 cut(s) 274, 370, 520, 610
MalI GATC 1 cut(s) 531
MbiI CCGCTC 1 cut(s) 42
MboI GATC 1 cut(s) 529
MboII GAAGA 4 cut(s) 377, 677, 680, 687
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 798
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 5 cut(s) 90, 103, 112, 327, 525
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 2 cut(s) 701, 727
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 8 cut(s) 43, 63, 258, 343, 383, 436, 760, 822
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 2 cut(s) 570, 819
MslI CAYNNNNRTG 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 464
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 287, 455
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 2 cut(s) 287, 455
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 1 cut(s) 529
NlaIII CATG 2 cut(s) 709, 730
NlaIV GGNNCC 1 cut(s) 321
NspI RCATGY 1 cut(s) 709
PciI ACATGT 1 cut(s) 705
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 361, 485, 581
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 2 cut(s) 211, 241
PleI GAGTC 2 cut(s) 700, 726
PpsI GAGTC 2 cut(s) 700, 726
PpuMI RGGWCCY 2 cut(s) 320, 605
PscI ACATGT 1 cut(s) 705
PsiI TTATAA 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 798
Psp5II RGGWCCY 2 cut(s) 320, 605
Psp6I CCWGG 2 cut(s) 285, 453
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 2 cut(s) 285, 453
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 4 cut(s) 320, 335, 440, 605
PspPPI RGGWCCY 2 cut(s) 320, 605
PstNI CAGNNNCTG 1 cut(s) 608
RsaI GTAC 4 cut(s) 151, 367, 405, 758
RsaNI GTAC 4 cut(s) 150, 366, 404, 757
RseI CAYNNNNRTG 1 cut(s) 255
SacI GAGCTC 1 cut(s) 798
SaqAI TTAA 2 cut(s) 570, 819
SatI GCNGC 2 cut(s) 210, 240
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 4 cut(s) 320, 335, 440, 605
ScaI AGTACT 1 cut(s) 151
SchI GAGTC 2 cut(s) 701, 727
ScrFI CCNGG 2 cut(s) 287, 455
SduI GDGCHC 1 cut(s) 798
SfaNI GCATC 1 cut(s) 731
SinI GGWCC 4 cut(s) 320, 335, 440, 605
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 3 cut(s) 314, 797, 818
SmoI CTYRAG 3 cut(s) 314, 797, 818
Sse9I AATT 5 cut(s) 90, 103, 112, 327, 525
SsiI CCGC 3 cut(s) 40, 333, 401
SspMI CTAG 4 cut(s) 129, 221, 482, 593
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 2 cut(s) 285, 453
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 370, 774
TaiI ACGT 2 cut(s) 127, 541
TaqI TCGA 3 cut(s) 100, 119, 388
TasI AATT 5 cut(s) 90, 103, 112, 327, 525
TatI WGTACW 2 cut(s) 149, 756
TfiI GAWTC 3 cut(s) 361, 485, 581
Tru1I TTAA 2 cut(s) 570, 819
Tru9I TTAA 2 cut(s) 570, 819
TseI GCWGC 2 cut(s) 209, 239
TspDTI ATGAA 3 cut(s) 105, 235, 239
Van91I CCANNNNNTGG 1 cut(s) 460
Vha464I CTTAAG 1 cut(s) 818
VpaK11BI GGWCC 4 cut(s) 320, 335, 440, 605
XapI RAATTY 2 cut(s) 90, 112
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 709
XspI CTAG 4 cut(s) 129, 221, 482, 593
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.