Prupe.6G182800_v2.0.a1

Protein SCO1 homolog 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012218
Physical Location & Seq
Reverse (-)
19012693 .. 19016734
4042 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G182800.1

Sequence Viewer

Length: 831 bp
ATGCTCTTTTCTCGTTTTCTTTTCTTTTCGGCCAAACAACGCTCAATAGAGGCTTTCAATCTACTTCGGAGGTCTGGCCTCCCTAAGAGAATTCATTCTCGTAGTTATGCAAATTCATCGAAAAGTGCTAATGGGAAGACAGATATTAGACCCCCGATGACTGTAGAAACACCACCGGCTTCTCGCACTAGGGCTTCCTATGTTATTCCGGCTGCTGGTGTACTATTCTTTGCTGGGTTGGCAACTTTCATTCATTATAATGATGAGAGGAGAGTAACTTTAAAAGCAGGTCAGGGTAACTGCCCATGCGTAAACAATCTCAGGGGCCCTATAATCGGTGGTCCCTTCACTTTAGTGGACATGGAGAACCACACTGTCACTGAACGAAATCTTTTAGGAAACTGGGTTCTTCTCTATTTTGGATATACTTCTTCTCCTGATGTTGGACCGGAACAACTCCAGTTGATGGCCAAGGCCATAAACATATTAGAATCGAGACATAACTTTAAGATTCTACCAGTATTTGTTACACTTGATCCACAACGTGATACCCCTTCTCATCTCCGTGCCTACCTTAAAGAGTTTGAATCAAGGATTGTAGGGTTAACAGGACCTGTATCAGCTATAAGGCAGATGGCTCAGGAATACCGTGCTTATTTTAAGAAGGTTGAAGAAGAGGGCGATGACTATCTTGTTGACTGTTCCCATAACATGTATTTGATGAACCCAAACATGGAAGTTGTGAGATGCATTGGTGTAGAGTACAATACAGATGAACTGTCAGAAGCAATCGTAAAGGAAGTGAAAAGAACCTCAACTGACAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCO1-SenC

Protein Analysis

277

Amino Acids

31.19

Weight (kDa)

8.97

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39740
fragaria_vesca FvH4_1g21130 FvH4_1g21130
malus_domestica MD01G1027600.v1.1
prunus_persica Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1
pyrus_communis pycom01g05570
rosa_chinensis RchiOBHm_Chr2g0114911
rosa_laevigata RLG00000018134
rosa_multiflora Rmu_sc0002764.1_g000020
rosa_roxburghii Rroxscaffold_2G00130440
rosa_rugosa Rorug02G0191700
rosa_samantha Rh2AG250500 Rh2BG259900 Rh2CG254700 Rh2DG258600
rosa_wichuraiana Rw2G019520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 466
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 2 cut(s) 30, 468
AcsI RAATTY 2 cut(s) 90, 112
AdeI CACNNNGTG 1 cut(s) 545
AfaI GTAC 2 cut(s) 222, 764
AfiI CCNNNNNNNGG 5 cut(s) 215, 335, 443, 466, 733
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 3 cut(s) 58, 587, 671
AleI CACNNNNGTG 1 cut(s) 353
AloI GAACNNNNNNTCC 2 cut(s) 390, 422
AluBI AGCT 2 cut(s) 623, 828
AluI AGCT 2 cut(s) 623, 828
Alw26I GTCTC 1 cut(s) 490
AlwI GGATC 1 cut(s) 530
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 5 cut(s) 30, 76, 325, 468, 474
ApaI GGGCCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 90, 112
Asp700I GAANNNNTTC 1 cut(s) 94
AspS9I GGNCC 5 cut(s) 325, 326, 341, 446, 611
AvaII GGWCC 3 cut(s) 341, 446, 611
BaeGI GKGCMC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 470
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 460, 628
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 2 cut(s) 189, 829
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 278
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 3 cut(s) 341, 446, 611
BmgT120I GGNCC 5 cut(s) 325, 326, 341, 446, 611
BmiI GGNNCC 3 cut(s) 326, 327, 343
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 737
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 639
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 335, 443, 466, 733
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 3 cut(s) 407, 460, 518
Bse8I GATNNNNATC 1 cut(s) 687
BseDI CCNNGG 1 cut(s) 471
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 5 cut(s) 215, 335, 443, 466, 733
BseMII CTCAG 2 cut(s) 334, 653
BseNI ACTGG 3 cut(s) 407, 460, 518
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 5 cut(s) 32, 78, 327, 470, 476
BsiSI CCGG 3 cut(s) 176, 209, 449
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 5 cut(s) 215, 335, 443, 466, 733
BsmAI GTCTC 1 cut(s) 490
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 5 cut(s) 32, 78, 327, 470, 476
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 535
BspANI GGCC 5 cut(s) 32, 78, 327, 470, 476
BspCNI CTCAG 2 cut(s) 333, 652
BspLI GGNNCC 3 cut(s) 326, 327, 343
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 3 cut(s) 407, 460, 518
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 1 cut(s) 535
BssT1I CCWWGG 1 cut(s) 471
Bst4CI ACNGT 5 cut(s) 163, 376, 650, 701, 780
Bst6I CTCTTC 1 cut(s) 669
BstDEI CTNAG 3 cut(s) 84, 320, 639
BstKTI GATC 1 cut(s) 538
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 1 cut(s) 535
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 715
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 143
BsuRI GGCC 5 cut(s) 32, 78, 327, 470, 476
BtgZI GCGATG 1 cut(s) 696
BtsIMutI CAGTG 2 cut(s) 372, 378
BveI ACCTGC 1 cut(s) 278
CaiI CAGNNNCTG 1 cut(s) 614
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 5 cut(s) 325, 326, 341, 446, 611
Csp6I GTAC 2 cut(s) 221, 763
CviAII CATG 4 cut(s) 306, 361, 712, 733
CviQI GTAC 2 cut(s) 221, 763
DdeI CTNAG 3 cut(s) 84, 320, 639
DpnI GATC 1 cut(s) 537
DpnII GATC 1 cut(s) 535
DraI TTTAAA 1 cut(s) 282
DraIII CACNNNGTG 1 cut(s) 545
EaeI YGGCCR 2 cut(s) 30, 468
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 3 cut(s) 341, 446, 611
EcoO109I RGGNCCY 3 cut(s) 325, 326, 611
EcoRI GAATTC 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 752
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 4 cut(s) 309, 364, 715, 736
FaqI GGGAC 1 cut(s) 327
FatI CATG 4 cut(s) 305, 360, 711, 732
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 189, 829
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 5 cut(s) 32, 78, 327, 470, 476
HapII CCGG 3 cut(s) 176, 209, 449
Hin1II CATG 4 cut(s) 309, 364, 715, 736
HincII GTYRAC 2 cut(s) 606, 697
HindII GTYRAC 2 cut(s) 606, 697
HinfI GANTC 3 cut(s) 491, 511, 587
HpaI GTTAAC 1 cut(s) 606
HpaII CCGG 3 cut(s) 176, 209, 449
Hpy166II GTNNAC 5 cut(s) 221, 313, 358, 606, 697
Hpy188I TCNGA 2 cut(s) 69, 784
Hpy188III TCNNGA 3 cut(s) 437, 495, 641
Hpy8I GTNNAC 5 cut(s) 221, 313, 358, 606, 697
HpyAV CCTTC 3 cut(s) 355, 564, 658
HpyCH4III ACNGT 5 cut(s) 163, 376, 650, 701, 780
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 2 cut(s) 110, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 3 cut(s) 84, 320, 639
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 4 cut(s) 309, 364, 715, 736
KspAI GTTAAC 1 cut(s) 606
Kzo9I GATC 1 cut(s) 535
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 737
MaeI CTAG 2 cut(s) 189, 829
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 4 cut(s) 274, 296, 376, 526
MalI GATC 1 cut(s) 537
MboI GATC 1 cut(s) 535
MboII GAAGA 5 cut(s) 148, 401, 423, 683, 686
MhlI GDGCHC 1 cut(s) 329
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 2 cut(s) 90, 112
MluNI TGGCCA 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 6 cut(s) 43, 63, 89, 261, 670, 823
Mox20I TGGCCA 1 cut(s) 470
Mph1103I ATGCAT 1 cut(s) 752
MroXI GAANNNNTTC 1 cut(s) 94
MscI TGGCCA 1 cut(s) 470
MseI TTAA 5 cut(s) 281, 507, 576, 605, 660
MslI CAYNNNNRTG 3 cut(s) 258, 353, 564
Msp20I TGGCCA 1 cut(s) 470
MspI CCGG 3 cut(s) 176, 209, 449
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 535
NlaIII CATG 4 cut(s) 309, 364, 715, 736
NlaIV GGNNCC 3 cut(s) 326, 327, 343
NmuCI GTSAC 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 752
NspI RCATGY 1 cut(s) 715
OliI CACNNNNGTG 1 cut(s) 353
PciI ACATGT 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 94
PfeI GAWTC 3 cut(s) 491, 511, 587
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 611
PscI ACATGT 1 cut(s) 711
PsiI TTATAA 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 611
PspFI CCCAGC 1 cut(s) 233
PspN4I GGNNCC 3 cut(s) 326, 327, 343
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 5 cut(s) 325, 326, 341, 446, 611
PspPPI RGGWCCY 1 cut(s) 611
PstNI CAGNNNCTG 1 cut(s) 614
RsaI GTAC 2 cut(s) 222, 764
RsaNI GTAC 2 cut(s) 221, 763
RseI CAYNNNNRTG 3 cut(s) 258, 353, 564
SaqAI TTAA 5 cut(s) 281, 507, 576, 605, 660
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 535
Sau96I GGNCC 5 cut(s) 325, 326, 341, 446, 611
SduI GDGCHC 1 cut(s) 329
SetI ASST 9 cut(s) 74, 292, 547, 576, 616, 625, 669, 815, 830
SfaNI GCATC 1 cut(s) 737
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 3 cut(s) 341, 446, 611
SmiMI CAYNNNNRTG 3 cut(s) 258, 353, 564
Sse9I AATT 2 cut(s) 90, 112
SspMI CTAG 2 cut(s) 189, 829
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 5 cut(s) 163, 376, 650, 701, 780
TaiI ACGT 1 cut(s) 547
TaqI TCGA 2 cut(s) 119, 494
TasI AATT 2 cut(s) 90, 112
TatI WGTACW 2 cut(s) 220, 762
TfiI GAWTC 3 cut(s) 491, 511, 587
Tru1I TTAA 5 cut(s) 281, 507, 576, 605, 660
Tru9I TTAA 5 cut(s) 281, 507, 576, 605, 660
TscAI CASTG 2 cut(s) 379, 385
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 6 cut(s) 83, 105, 238, 242, 737, 789
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 2 cut(s) 379, 385
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 3 cut(s) 341, 446, 611
XapI RAATTY 2 cut(s) 90, 112
XceI RCATGY 1 cut(s) 715
XmnI GAANNNNTTC 1 cut(s) 94
XspI CTAG 2 cut(s) 189, 829
Zsp2I ATGCAT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.