RchiOBHm_Chr2g0114911

Protein SCO1 homolog 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012218
Physical Location & Seq
Forward (+)
26822785 .. 26827376
4592 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48812

Sequence Viewer

Length: 831 bp
ATGATGCCCATTTCTCGCTTCTGTTTCTTTTCCTTCAAACACCGTTCAAAGGAGGCTTTAAATCTACTCAGGAGGTCTGCCCCATCTAAGAGAATTCAGTCTCGAAATTATGCAAATTCATCGAAACGTGCTAGTGGGAGAACAGATATCAGTACTTCAACACCAGTAGATACACCACCTTCTCCCTCTCGGGGTTCTTTCATCTTTCCGGCTGCTACTCTACTAGGATTTGCTGGGTTGGCAGCTTTCATTCATTATAATGATGAGAGGAGAGTAGTAACGAAAGGCCAGGATAACTGCTCGTGTGTAAATAATCTCAAGGGACCTATAATTGGTGGTCCATTTACTTTAGAGGACACAGAGAATCGTACCGTTACTGAGAAAAATCTTCGCGGCAACTGGGCGGTACTCTATTTTGGATATACTTCCTCTCCTGATGTTGGACCAGAGCAAGTCCAGATTATGGCCAAGGCCATAAACATTCTAGAATCAAGACATAATCTCAAAGTTCTACCAGTATTTGTTACAATTGATCCACAACGTGATACCCCTTCTCAACTGCGTGCCTACCTTAAAGAGTTTGAATCAAACATTCTAGGGCTAACAGGACCTGTAACAGCTATAAGACAGATGGCTCAGGAATATCGTGTTTATTTCAGAAAGATTGAAGAAGATGGGGATGATTATCTCGTTGAGTCTTCCCACAACATGTATTTGATGAGTCCAAACATGGAAGTTGTGAGATGCTTTGGTGTAGAGTACAATGCAGAGGAACTGTCAGAAGCGATACTAAAGGAGCTCAAGTCAAGAGAACCTCAACTTAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCO1-SenC

Protein Analysis

276

Amino Acids

31.19

Weight (kDa)

8.59

Isoelectric Point (pI)

64.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCO1-SenC PF02630 112 - 245 1.5e-41 SCO1/SenC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39740
fragaria_vesca FvH4_1g21130 FvH4_1g21130
malus_domestica MD01G1027600.v1.1
prunus_persica Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1
pyrus_communis pycom01g05570
rosa_chinensis RchiOBHm_Chr2g0114911
rosa_laevigata RLG00000018134
rosa_multiflora Rmu_sc0002764.1_g000020
rosa_roxburghii Rroxscaffold_2G00130440
rosa_rugosa Rorug02G0191700
rosa_samantha Rh2AG250500 Rh2BG259900 Rh2CG254700 Rh2DG258600
rosa_wichuraiana Rw2G019520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 463
AccII CGCG 1 cut(s) 393
AciI CCGC 2 cut(s) 393, 404
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 2 cut(s) 93, 115
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 4 cut(s) 154, 370, 408, 761
AfiI CCNNNNNNNGG 5 cut(s) 49, 191, 332, 440, 463
AflII CTTAAG 1 cut(s) 821
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 5 cut(s) 37, 48, 159, 584, 668
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 3 cut(s) 245, 620, 799
AluI AGCT 3 cut(s) 245, 620, 799
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 527
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 3 cut(s) 286, 465, 471
ApeKI GCWGC 2 cut(s) 212, 242
ApoI RAATTY 2 cut(s) 93, 115
AspS9I GGNCC 4 cut(s) 323, 338, 443, 608
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 4 cut(s) 323, 338, 443, 608
BalI TGGCCA 1 cut(s) 467
BanII GRGCYC 1 cut(s) 801
BauI CACGAG 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 2 cut(s) 199, 254
BccI CCATC 3 cut(s) 91, 625, 668
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 4 cut(s) 132, 224, 485, 596
BfrI CTTAAG 1 cut(s) 821
BisI GCNGC 3 cut(s) 213, 243, 394
BlsI GCNGC 3 cut(s) 214, 244, 395
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 4 cut(s) 323, 338, 443, 608
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 4 cut(s) 323, 338, 443, 608
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 734
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 2 cut(s) 302, 785
BsaBI GATNNNNATC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 468
BsaXI ACNNNNNCTCC 4 cut(s) 415, 445, 788, 818
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 191, 332, 440, 463
Bse1I ACTGG 3 cut(s) 164, 404, 515
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 1 cut(s) 685
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 5 cut(s) 49, 191, 332, 440, 463
BseMII CTCAG 3 cut(s) 82, 369, 650
BseNI ACTGG 3 cut(s) 164, 404, 515
BseRI GAGGAG 1 cut(s) 283
BseXI GCAGC 2 cut(s) 199, 254
BseYI CCCAGC 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 3 cut(s) 288, 467, 473
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 5 cut(s) 49, 191, 332, 440, 463
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 3 cut(s) 288, 467, 473
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 801
Bsp143I GATC 1 cut(s) 532
BspACI CCGC 2 cut(s) 393, 404
BspANI GGCC 3 cut(s) 288, 467, 473
BspCNI CTCAG 3 cut(s) 81, 370, 649
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 1 cut(s) 527
BspTI CTTAAG 1 cut(s) 821
BsrI ACTGG 3 cut(s) 164, 404, 515
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 1 cut(s) 532
BssSI CACGAG 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 3 cut(s) 44, 373, 777
BstAFI CTTAAG 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 4 cut(s) 68, 87, 378, 636
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 1 cut(s) 393
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 288
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 199, 254
BstV2I GAAGAC 1 cut(s) 690
BsuRI GGCC 3 cut(s) 288, 467, 473
BtsCI GGATG 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 564
CaiI CAGNNNCTG 1 cut(s) 611
Cfr13I GGNCC 4 cut(s) 323, 338, 443, 608
Csp6I GTAC 4 cut(s) 153, 369, 407, 760
CviAII CATG 2 cut(s) 709, 730
CviQI GTAC 4 cut(s) 153, 369, 407, 760
DdeI CTNAG 4 cut(s) 68, 87, 378, 636
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
DraI TTTAAA 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 542
EaeI YGGCCR 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 801
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 4 cut(s) 323, 338, 443, 608
Eco53kI GAGCTC 1 cut(s) 799
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 799
EcoO109I RGGNCCY 2 cut(s) 323, 608
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 288
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 712, 733
FaqI GGGAC 1 cut(s) 336
FatI CATG 2 cut(s) 708, 729
Fnu4HI GCNGC 3 cut(s) 213, 243, 394
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 3 cut(s) 213, 243, 394
FspBI CTAG 4 cut(s) 132, 224, 485, 596
GluI GCNGC 3 cut(s) 213, 243, 394
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 3 cut(s) 288, 467, 473
HapII CCGG 1 cut(s) 209
Hin1II CATG 2 cut(s) 712, 733
HinfI GANTC 5 cut(s) 364, 488, 584, 695, 721
HpaII CCGG 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 659, 781
Hpy188III TCNNGA 8 cut(s) 70, 102, 434, 457, 485, 492, 638, 807
HpyAV CCTTC 3 cut(s) 43, 189, 561
HpyCH4III ACNGT 3 cut(s) 44, 373, 777
HpyCH4IV ACGT 2 cut(s) 127, 541
HpyCH4V TGCA 2 cut(s) 113, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 4 cut(s) 68, 87, 378, 636
HpySE526I ACGT 2 cut(s) 127, 541
Hsp92II CATG 2 cut(s) 712, 733
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 1 cut(s) 796
Lsp1109I GCAGC 2 cut(s) 199, 254
LweI GCATC 1 cut(s) 734
MaeI CTAG 4 cut(s) 132, 224, 485, 596
MaeII ACGT 2 cut(s) 127, 541
MaeIII GTNAC 4 cut(s) 277, 373, 523, 613
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 4 cut(s) 380, 680, 683, 690
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 801
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 5 cut(s) 93, 106, 115, 330, 528
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 2 cut(s) 704, 730
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 8 cut(s) 46, 66, 196, 261, 346, 439, 763, 825
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MseI TTAA 3 cut(s) 59, 573, 822
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 467
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 290
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 532
NlaIII CATG 2 cut(s) 712, 733
NlaIV GGNNCC 1 cut(s) 324
NspI RCATGY 1 cut(s) 712
PciI ACATGT 1 cut(s) 708
PfeI GAWTC 3 cut(s) 364, 488, 584
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 3 cut(s) 214, 244, 395
PleI GAGTC 2 cut(s) 703, 729
PpsI GAGTC 2 cut(s) 703, 729
PpuMI RGGWCCY 2 cut(s) 323, 608
PscI ACATGT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 801
Psp5II RGGWCCY 2 cut(s) 323, 608
Psp6I CCWGG 1 cut(s) 288
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 4 cut(s) 323, 338, 443, 608
PspPPI RGGWCCY 2 cut(s) 323, 608
PstNI CAGNNNCTG 1 cut(s) 611
RsaI GTAC 4 cut(s) 154, 370, 408, 761
RsaNI GTAC 4 cut(s) 153, 369, 407, 760
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 1 cut(s) 801
SaqAI TTAA 3 cut(s) 59, 573, 822
SatI GCNGC 3 cut(s) 213, 243, 394
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 4 cut(s) 323, 338, 443, 608
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 2 cut(s) 704, 730
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 1 cut(s) 734
SinI GGWCC 4 cut(s) 323, 338, 443, 608
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 3 cut(s) 317, 800, 821
SmoI CTYRAG 3 cut(s) 317, 800, 821
Sse9I AATT 5 cut(s) 93, 106, 115, 330, 528
SsiI CCGC 2 cut(s) 393, 404
SspMI CTAG 4 cut(s) 132, 224, 485, 596
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 3 cut(s) 44, 373, 777
TaiI ACGT 2 cut(s) 130, 544
TaqI TCGA 2 cut(s) 103, 122
TasI AATT 5 cut(s) 93, 106, 115, 330, 528
TatI WGTACW 2 cut(s) 152, 759
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 3 cut(s) 364, 488, 584
Tru1I TTAA 3 cut(s) 59, 573, 822
Tru9I TTAA 3 cut(s) 59, 573, 822
TseI GCWGC 2 cut(s) 212, 242
TspDTI ATGAA 4 cut(s) 108, 190, 238, 242
Van91I CCANNNNNTGG 1 cut(s) 463
Vha464I CTTAAG 1 cut(s) 821
VpaK11BI GGWCC 4 cut(s) 323, 338, 443, 608
XapI RAATTY 2 cut(s) 93, 115
XbaI TCTAGA 1 cut(s) 484
XceI RCATGY 1 cut(s) 712
XspI CTAG 4 cut(s) 132, 224, 485, 596
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.