FvH4_1g21130

Protein SCO1 homolog 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012218
Physical Location & Seq
Forward (+)
13156527 .. 13160161
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21130.t2

Sequence Viewer

Length: 843 bp
ATGATGCCCATTTCTCGCTTCTGTTTCTTTTCCTTGAGAAATCGCTCAAAGGAGGCTTTCAATTTACTCAGGAGGTCTGCCCCATCCAAGAGTATTCAGTCTCGAAACTATGCAAATACCTCGAAACGTGCTAGTAGGAGAACAGATATCAGTACTTCAACGCCAATAGATACACCACCTTCTCACTCTCGGGGTTCTTTTTTCCTCCCAGCAGCTGCTACTGTACTAGGATTTGCTGGGTTGGCAGCTTTTCTTCATTATAATGATGAGAGGAGAGTAGTAATGAAAGGCCAGGAATCCCAGGATAACTGCTCATGTGTAAATGATATCAAGGGGCCTATAATTGGTGGTCCATTTACTTTACAGGACACAGAGAATCGTACCGTAACTGAGAAAAATCTTCAGGGCAACTGGGCAGTACTCTATTTCGGATATACTTCCTCTCCTGATGTTGGACCAGAGCAAGTCCAGCTTATGGCCAAGGCTATAAACATACTAGAATCAAGACATAATCTCAAGGTTCTACCAGTATTTGTTACAATTGATCCACAACGTGATACCCCTTCTCATCTGCGTGCCTATCTTAAAGAGTTTGAATCAAAGATTCTAGGTCTAACAGGACCTGTAACAGCTATCAGACAGATGGCTCAGGAATATCGTGTTTTCTTCAAAAAGGTTGAAGAAGATGGGGATGATTATCTCGTTGAGTCTTCCCACAACATGTATTTGATGAGTCCAAACATGGAAGTTGTGAGATGCTTTGGTGTAGAGTATAATGCAGAGGAACTGTCAGAAGCAATACTGAAGGAGCTTAAGTCAAGAGAACCTCAACTCAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0042592 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098771
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCO1-SenC

Protein Analysis

281

Amino Acids

31.6

Weight (kDa)

8.59

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCO1-SenC PF02630 116 - 239 5.6e-32 SCO1/SenC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39740
fragaria_vesca FvH4_1g21130 FvH4_1g21130
malus_domestica MD01G1027600.v1.1
prunus_persica Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1 Prupe.6G182800_v2.0.a1
pyrus_communis pycom01g05570
rosa_chinensis RchiOBHm_Chr2g0114911
rosa_laevigata RLG00000018134
rosa_multiflora Rmu_sc0002764.1_g000020
rosa_roxburghii Rroxscaffold_2G00130440
rosa_rugosa Rorug02G0191700
rosa_samantha Rh2AG250500 Rh2BG259900 Rh2CG254700 Rh2DG258600
rosa_wichuraiana Rw2G019520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccB7I CCANNNNNTGG 1 cut(s) 475
AclWI GGATC 1 cut(s) 539
AcoI YGGCCR 1 cut(s) 477
AcuI CTGAAG 2 cut(s) 386, 824
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 4 cut(s) 154, 225, 382, 420
AfiI CCNNNNNNNGG 3 cut(s) 344, 452, 475
AflII CTTAAG 1 cut(s) 812
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 5 cut(s) 61, 159, 596, 670, 680
AjnI CCWGG 2 cut(s) 291, 300
AluBI AGCT 5 cut(s) 215, 248, 472, 632, 811
AluI AGCT 5 cut(s) 215, 248, 472, 632, 811
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 539
AlwNI CAGNNNCTG 2 cut(s) 215, 623
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 3 cut(s) 289, 335, 477
ApeKI GCWGC 3 cut(s) 212, 215, 245
AspS9I GGNCC 4 cut(s) 335, 350, 455, 620
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 3 cut(s) 350, 455, 620
BalI TGGCCA 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 702
BbvI GCAGC 3 cut(s) 202, 224, 257
BccI CCATC 3 cut(s) 91, 637, 680
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 2 cut(s) 293, 302
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 4 cut(s) 132, 227, 497, 608
BfrI CTTAAG 1 cut(s) 812
BisI GCNGC 3 cut(s) 213, 216, 246
BlsI GCNGC 3 cut(s) 214, 217, 247
BmcAI AGTACT 2 cut(s) 154, 420
Bme1390I CCNGG 2 cut(s) 293, 302
Bme18I GGWCC 3 cut(s) 350, 455, 620
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 4 cut(s) 335, 350, 455, 620
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 293, 302
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 746
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 702
Bpu10I CCTNAGC 1 cut(s) 648
BpuEI CTTGAG 3 cut(s) 55, 500, 818
BsaBI GATNNNNATC 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 300, 480
BsaXI ACNNNNNCTCC 4 cut(s) 427, 457, 800, 830
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 452, 475
Bse1I ACTGG 2 cut(s) 416, 527
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 2 cut(s) 293, 302
BseDI CCNNGG 2 cut(s) 300, 480
BseGI GGATG 2 cut(s) 83, 697
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 3 cut(s) 344, 452, 475
BseMII CTCAG 3 cut(s) 82, 381, 662
BseNI ACTGG 2 cut(s) 416, 527
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 3 cut(s) 202, 224, 257
BseYI CCCAGC 2 cut(s) 208, 236
BshFI GGCC 3 cut(s) 291, 337, 479
BsiHKCI CYCGRG 1 cut(s) 189
BslI CCNNNNNNNGG 3 cut(s) 344, 452, 475
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 3 cut(s) 291, 337, 479
BsoBI CYCGRG 1 cut(s) 189
Bsp143I GATC 1 cut(s) 544
BspANI GGCC 3 cut(s) 291, 337, 479
BspCNI CTCAG 3 cut(s) 81, 382, 661
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 1 cut(s) 539
BspTI CTTAAG 1 cut(s) 812
BsrI ACTGG 2 cut(s) 416, 527
BssECI CCNNGG 2 cut(s) 300, 480
BssMI GATC 1 cut(s) 544
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 293, 302
Bst4CI ACNGT 3 cut(s) 223, 385, 789
BstAFI CTTAAG 1 cut(s) 812
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 3 cut(s) 68, 390, 648
BstF5I GGATG 2 cut(s) 83, 697
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 2 cut(s) 242, 469
BstNI CCWGG 2 cut(s) 293, 302
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 291, 300
BstV1I GCAGC 3 cut(s) 202, 224, 257
BstV2I GAAGAC 1 cut(s) 702
BsuRI GGCC 3 cut(s) 291, 337, 479
BtsCI GGATG 2 cut(s) 83, 697
Cac8I GCNNGC 1 cut(s) 576
CaiI CAGNNNCTG 2 cut(s) 215, 623
Cfr13I GGNCC 4 cut(s) 335, 350, 455, 620
Csp6I GTAC 4 cut(s) 153, 224, 381, 419
CviAII CATG 3 cut(s) 315, 721, 742
CviQI GTAC 4 cut(s) 153, 224, 381, 419
DdeI CTNAG 3 cut(s) 68, 390, 648
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
DraIII CACNNNGTG 1 cut(s) 554
EaeI YGGCCR 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 480
Eco32I GATATC 2 cut(s) 148, 328
Eco47I GGWCC 3 cut(s) 350, 455, 620
Eco57I CTGAAG 2 cut(s) 386, 824
Eco88I CYCGRG 1 cut(s) 189
EcoO109I RGGNCCY 2 cut(s) 335, 620
EcoRII CCWGG 2 cut(s) 291, 300
EcoRV GATATC 2 cut(s) 148, 328
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 3 cut(s) 318, 724, 745
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FatI CATG 3 cut(s) 314, 720, 741
Fnu4HI GCNGC 3 cut(s) 213, 216, 246
FokI GGATG 2 cut(s) 70, 704
Fsp4HI GCNGC 3 cut(s) 213, 216, 246
FspBI CTAG 4 cut(s) 132, 227, 497, 608
GluI GCNGC 3 cut(s) 213, 216, 246
GsaI CCCAGC 2 cut(s) 212, 240
HaeIII GGCC 3 cut(s) 291, 337, 479
Hin1II CATG 3 cut(s) 318, 724, 745
HinfI GANTC 7 cut(s) 296, 376, 500, 596, 604, 707, 733
Hpy188I TCNGA 3 cut(s) 431, 638, 793
Hpy188III TCNNGA 6 cut(s) 70, 102, 446, 504, 650, 819
HpyAV CCTTC 3 cut(s) 189, 573, 799
HpyCH4III ACNGT 3 cut(s) 223, 385, 789
HpyCH4IV ACGT 2 cut(s) 127, 553
HpyCH4V TGCA 2 cut(s) 113, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 469
HpyF3I CTNAG 3 cut(s) 68, 390, 648
HpySE526I ACGT 2 cut(s) 127, 553
Hsp92II CATG 3 cut(s) 318, 724, 745
Kzo9I GATC 1 cut(s) 544
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 3 cut(s) 202, 224, 257
LweI GCATC 1 cut(s) 746
MaeI CTAG 4 cut(s) 132, 227, 497, 608
MaeII ACGT 2 cut(s) 127, 553
MaeIII GTNAC 3 cut(s) 385, 535, 625
MalI GATC 1 cut(s) 546
MboI GATC 1 cut(s) 544
MboII GAAGA 6 cut(s) 245, 392, 658, 692, 695, 702
MfeI CAATTG 1 cut(s) 540
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 3 cut(s) 61, 342, 540
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 2 cut(s) 716, 742
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 8 cut(s) 46, 66, 130, 215, 264, 451, 775, 837
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 585, 813
MslI CAYNNNNRTG 2 cut(s) 261, 573
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 215
MspCI CTTAAG 1 cut(s) 812
MspR9I CCNGG 2 cut(s) 293, 302
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 2 cut(s) 293, 302
MwoI GCNNNNNNNGC 2 cut(s) 242, 469
NdeII GATC 1 cut(s) 544
NlaIII CATG 3 cut(s) 318, 724, 745
NlaIV GGNNCC 1 cut(s) 336
NspI RCATGY 1 cut(s) 724
PciI ACATGT 1 cut(s) 720
PfeI GAWTC 5 cut(s) 296, 376, 500, 596, 604
PflMI CCANNNNNTGG 1 cut(s) 475
PkrI GCNGC 3 cut(s) 214, 217, 247
PleI GAGTC 2 cut(s) 715, 741
PpsI GAGTC 2 cut(s) 715, 741
PpuMI RGGWCCY 1 cut(s) 620
PscI ACATGT 1 cut(s) 720
PsiI TTATAA 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 291, 300
PspFI CCCAGC 2 cut(s) 208, 236
PspGI CCWGG 2 cut(s) 291, 300
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 4 cut(s) 335, 350, 455, 620
PspPPI RGGWCCY 1 cut(s) 620
PstNI CAGNNNCTG 2 cut(s) 215, 623
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 4 cut(s) 154, 225, 382, 420
RsaNI GTAC 4 cut(s) 153, 224, 381, 419
RseI CAYNNNNRTG 2 cut(s) 261, 573
SaqAI TTAA 2 cut(s) 585, 813
SatI GCNGC 3 cut(s) 213, 216, 246
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 4 cut(s) 335, 350, 455, 620
ScaI AGTACT 2 cut(s) 154, 420
SchI GAGTC 2 cut(s) 716, 742
ScrFI CCNGG 2 cut(s) 293, 302
SfaNI GCATC 1 cut(s) 746
SinI GGWCC 3 cut(s) 350, 455, 620
SmiMI CAYNNNNRTG 2 cut(s) 261, 573
SmlI CTYRAG 4 cut(s) 34, 515, 812, 833
SmoI CTYRAG 4 cut(s) 34, 515, 812, 833
Sse9I AATT 3 cut(s) 61, 342, 540
SspMI CTAG 4 cut(s) 132, 227, 497, 608
StyD4I CCNGG 2 cut(s) 291, 300
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 3 cut(s) 223, 385, 789
TaiI ACGT 2 cut(s) 130, 556
TaqI TCGA 2 cut(s) 103, 122
TasI AATT 3 cut(s) 61, 342, 540
TatI WGTACW 3 cut(s) 152, 223, 418
TfiI GAWTC 5 cut(s) 296, 376, 500, 596, 604
Tru1I TTAA 2 cut(s) 585, 813
Tru9I TTAA 2 cut(s) 585, 813
TseI GCWGC 3 cut(s) 212, 215, 245
TspDTI ATGAA 2 cut(s) 245, 299
Van91I CCANNNNNTGG 1 cut(s) 475
Vha464I CTTAAG 1 cut(s) 812
VpaK11BI GGWCC 3 cut(s) 350, 455, 620
XceI RCATGY 1 cut(s) 724
XspI CTAG 4 cut(s) 132, 227, 497, 608
ZrmI AGTACT 2 cut(s) 154, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.