AT4G39880

Ribosomal protein L23

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013552
Physical Location & Seq
Forward (+)
18504489 .. 18505472
984 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39880.1

Sequence Viewer

Length: 537 bp
ATGGGGAGTAGATTGGGAGGACGAGTGGTTCATTTCGCGAATCTTCCGATTAAGCTTCTGATGCCTGCGAAGCTGACCAACATTCACGAATTCGCGTTGAAAACGATTCCTTCCGCGTCCAAGATCGAGATCAAGCGAGTCCTGGAGTCGCTCTACGGATTCGATGTGGAGAAGGTGAATACTTTAAACATGGATGGGAAGAAGAAGAAGCGTGGTGGTTTGTTGATAGCGAAAGCTGATTACAAGAAGGCTTACGTCACGCTACGTAGTCCATTGTCGATTTCTAGGGATTTGTTTCCGGTGAAGTATATCGAGGAAGATAGGAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAGAGTCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAAGGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGAGAGGTGGTGCTGCGGCGGCGGGGACGGCCAAGTTTCCATGGAGCAACATGAGATTTGTTGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L23

Protein Analysis

178

Amino Acids

19.85

Weight (kDa)

10.16

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23 PF00276 30 - 90 8.8e-16 Ribosomal protein L23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39880
fragaria_vesca FvH4_1g20880 FvH4_1g20880 FvH4_1g20880
malus_domestica MD01G1030100.v1.1 MD06G1167700.v1.1 MD15G1324000.v1.1
prunus_persica Prupe.6G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0113491
rosa_laevigata RLG00000018069
rosa_multiflora Rmu_sc0007415.1_g000021
rosa_roxburghii Rroxscaffold_2G00129200
rosa_rugosa Rorug02G0187900
rosa_samantha Rh2AG242400 Rh2CG246600 Rh2DG250400
rosa_wichuraiana Rw0G018890 Rw2G018950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 38, 95, 116
AciI CCGC 4 cut(s) 114, 482, 485, 488
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 470
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 141
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 4 cut(s) 55, 73, 236, 348
AluI AGCT 4 cut(s) 55, 73, 236, 348
AlwI GGATC 1 cut(s) 349
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 89
AsuHPI GGTGA 3 cut(s) 187, 313, 458
BbvI GCAGC 1 cut(s) 466
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 510
BciT130I CCWGG 1 cut(s) 143
BfaI CTAG 2 cut(s) 285, 345
BisI GCNGC 3 cut(s) 480, 483, 486
BlsI GCNGC 3 cut(s) 481, 484, 487
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 506
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 506
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 466
Bsh1236I CGCG 3 cut(s) 38, 95, 116
BshFI GGCC 1 cut(s) 497
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 1 cut(s) 497
Bsp143I GATC 4 cut(s) 123, 129, 341, 388
Bsp19I CCATGG 1 cut(s) 506
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 4 cut(s) 114, 482, 485, 488
BspANI GGCC 1 cut(s) 497
BspFNI CGCG 3 cut(s) 38, 95, 116
BspPI GGATC 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 4 cut(s) 123, 129, 341, 388
BssT1I CCWWGG 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 143
Bst6I CTCTTC 3 cut(s) 320, 368, 395
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 506
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 3 cut(s) 38, 95, 116
BstKTI GATC 4 cut(s) 126, 132, 344, 391
BstMBI GATC 4 cut(s) 123, 129, 341, 388
BstMWI GCNNNNNNNGC 4 cut(s) 61, 70, 485, 494
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSNI TACGTA 1 cut(s) 266
BstUI CGCG 3 cut(s) 38, 95, 116
BstV1I GCAGC 1 cut(s) 466
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BsuRI GGCC 1 cut(s) 497
BtgI CCRYGG 1 cut(s) 506
BtsCI GGATG 1 cut(s) 199
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 66
CseI GACGC 1 cut(s) 105
CviAII CATG 3 cut(s) 190, 507, 517
CviJI RGCY 8 cut(s) 55, 73, 236, 251, 348, 385, 455, 497
CviKI_1 RGCY 8 cut(s) 55, 73, 236, 251, 348, 385, 455, 497
DpnI GATC 4 cut(s) 125, 131, 343, 390
DpnII GATC 4 cut(s) 123, 129, 341, 388
DraI TTTAAA 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 3 cut(s) 320, 368, 395
EarI CTCTTC 3 cut(s) 320, 368, 395
Eco105I TACGTA 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 506
FaeI CATG 3 cut(s) 193, 510, 520
FaiI YATR 5 cut(s) 191, 309, 420, 508, 518
FaqI GGGAC 1 cut(s) 505
FatI CATG 3 cut(s) 189, 506, 516
FauI CCCGC 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 480, 483, 486
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 480, 483, 486
FspBI CTAG 2 cut(s) 285, 345
GluI GCNGC 3 cut(s) 480, 483, 486
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 497
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 193, 510, 520
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 6 cut(s) 40, 106, 138, 146, 159, 376
HpaII CCGG 1 cut(s) 299
HphI GGTGA 3 cut(s) 187, 313, 458
Hpy188I TCNGA 3 cut(s) 48, 60, 465
Hpy188III TCNNGA 3 cut(s) 37, 86, 127
Hpy99I CGWCG 2 cut(s) 441, 469
HpyAV CCTTC 3 cut(s) 120, 166, 241
HpyCH4IV ACGT 2 cut(s) 255, 265
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 70, 485, 494
HpySE526I ACGT 2 cut(s) 255, 265
Hsp92II CATG 3 cut(s) 193, 510, 520
Kzo9I GATC 4 cut(s) 123, 129, 341, 388
LmnI GCTCC 1 cut(s) 510
LpnPI CCDG 4 cut(s) 78, 128, 155, 312
Lsp1109I GCAGC 1 cut(s) 466
LweI GCATC 1 cut(s) 51
MaeI CTAG 2 cut(s) 285, 345
MaeII ACGT 2 cut(s) 255, 265
MaeIII GTNAC 1 cut(s) 256
MalI GATC 4 cut(s) 125, 131, 343, 390
MboI GATC 4 cut(s) 123, 129, 341, 388
MflI RGATCY 1 cut(s) 341
MluCI AATT 1 cut(s) 89
MlyI GAGTC 3 cut(s) 147, 155, 385
MmeI TCCRAC 1 cut(s) 488
MnlI CCTC 6 cut(s) 11, 307, 349, 396, 434, 464
MseI TTAA 2 cut(s) 51, 185
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 3 cut(s) 38, 95, 116
MwoI GCNNNNNNNGC 4 cut(s) 61, 70, 485, 494
NcoI CCATGG 1 cut(s) 506
NdeII GATC 4 cut(s) 123, 129, 341, 388
NlaIII CATG 3 cut(s) 193, 510, 520
NmuCI GTSAC 1 cut(s) 256
NruI TCGCGA 1 cut(s) 38
PfeI GAWTC 3 cut(s) 40, 106, 159
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 3 cut(s) 481, 484, 487
PleI GAGTC 3 cut(s) 146, 154, 384
PpsI GAGTC 3 cut(s) 146, 154, 384
Ppu21I YACGTR 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PsuI RGATCY 1 cut(s) 341
RruI TCGCGA 1 cut(s) 38
SaqAI TTAA 2 cut(s) 51, 185
SatI GCNGC 3 cut(s) 480, 483, 486
Sau3AI GATC 4 cut(s) 123, 129, 341, 388
SchI GAGTC 3 cut(s) 147, 155, 385
ScrFI CCNGG 1 cut(s) 143
SfaNI GCATC 1 cut(s) 51
SnaBI TACGTA 1 cut(s) 266
Sse9I AATT 1 cut(s) 89
SsiI CCGC 4 cut(s) 114, 482, 485, 488
SspMI CTAG 2 cut(s) 285, 345
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 506
TaiI ACGT 2 cut(s) 258, 268
TaqI TCGA 5 cut(s) 126, 162, 278, 312, 439
TasI AATT 1 cut(s) 89
TauI GCSGC 2 cut(s) 485, 488
TfiI GAWTC 3 cut(s) 40, 106, 159
Tru1I TTAA 2 cut(s) 51, 185
Tru9I TTAA 2 cut(s) 51, 185
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 171
XapI RAATTY 1 cut(s) 89
XspI CTAG 2 cut(s) 285, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.