MD01G1030100.v1.1

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013552
Physical Location & Seq
Forward (+)
10786744 .. 10787262
519 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1030100.v1.1.491

Sequence Viewer

Length: 519 bp
ATGGGAAGCAGATTGGGAAGGAGGGTAGTCCACTTCGCAAACCTACCCATCAAGCTTCTGATGCCCAACAACTTCACCAACATCACAGAAATCGCTCTCAAAACCATCCCATCGGCCTCCAAGATCGAAATCAAGCGCGTCATGGAGTCCCTCTACGGATTCCAGGTCGAGAAGGTCCGCACCCTCAACATGGAGGGCAAGAAGAAGAAGCGTGGCGGTCTTCTCATCGCAAAACCCGACTACAAGAAGGCCTACGTCACCCTCAAGGCTCCCCTCTCTCTCTCCCAGGACCTCTACCCCATCGGAATCGTCCAGCAGGACCGCAAGCAGCAGACAGCCAACCAGACCAAGTCCGCTGTCGTCGAAGAGGGCGAGACGGAGAAGCATTGGCTTTACGGGAACAAGGAGCGGCAGCAGCAGCCGGCAGGCACTCGCAGGGGTAAGAACACCGGTAAGGGTTCGGCTGTTTTCGGCGACGGCTCCGCCAAGTTCCCGTGGAGCAACATGAGGTTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L23

Protein Analysis

173

Amino Acids

19.41

Weight (kDa)

10.31

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23 PF00276 30 - 90 1.3e-15 Ribosomal protein L23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39880
fragaria_vesca FvH4_1g20880 FvH4_1g20880 FvH4_1g20880
malus_domestica MD01G1030100.v1.1 MD06G1167700.v1.1 MD15G1324000.v1.1
prunus_persica Prupe.6G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0113491
rosa_laevigata RLG00000018069
rosa_multiflora Rmu_sc0007415.1_g000021
rosa_roxburghii Rroxscaffold_2G00129200
rosa_rugosa Rorug02G0187900
rosa_samantha Rh2AG242400 Rh2CG246600 Rh2DG250400
rosa_wichuraiana Rw0G018890 Rw2G018950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 409
AccII CGCG 1 cut(s) 138
AciI CCGC 7 cut(s) 178, 216, 322, 354, 409, 483, 514
AfiI CCNNNNNNNGG 1 cut(s) 190
AgeI ACCGGT 1 cut(s) 449
AjnI CCWGG 2 cut(s) 162, 285
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 368
AoxI GGCC 2 cut(s) 114, 249
ApeKI GCWGC 4 cut(s) 328, 412, 415, 418
AsiGI ACCGGT 1 cut(s) 449
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 3 cut(s) 175, 289, 319
AsuHPI GGTGA 2 cut(s) 67, 250
AvaII GGWCC 3 cut(s) 175, 289, 319
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 4 cut(s) 340, 424, 427, 430
BccI CCATC 4 cut(s) 56, 113, 118, 308
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 2 cut(s) 164, 287
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 1 cut(s) 517
BisI GCNGC 5 cut(s) 329, 410, 413, 416, 419
BlsI GCNGC 5 cut(s) 330, 411, 414, 417, 420
Bme1390I CCNGG 2 cut(s) 164, 287
Bme18I GGWCC 3 cut(s) 175, 289, 319
BmgT120I GGNCC 3 cut(s) 175, 289, 319
BmiI GGNNCC 3 cut(s) 270, 481, 512
BmrFI CCNGG 2 cut(s) 164, 287
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 285, 494
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 2 cut(s) 421, 449
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 2 cut(s) 164, 287
BseDI CCNNGG 2 cut(s) 285, 494
BseGI GGATG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 190
BseXI GCAGC 4 cut(s) 340, 424, 427, 430
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 116, 251
BshTI ACCGGT 1 cut(s) 449
BsiSI CCGG 2 cut(s) 422, 450
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 368
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 116, 251
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 7 cut(s) 178, 216, 322, 354, 409, 483, 514
BspANI GGCC 2 cut(s) 116, 251
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 270, 481, 512
BsrBI CCGCTC 1 cut(s) 409
BsrFI RCCGGY 2 cut(s) 421, 449
BssAI RCCGGY 2 cut(s) 421, 449
BssECI CCNNGG 2 cut(s) 285, 494
BssMI GATC 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 164, 287
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 326, 423, 427
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 61, 415, 418
BstNI CCWGG 2 cut(s) 164, 287
BstSCI CCNGG 2 cut(s) 162, 285
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 4 cut(s) 340, 424, 427, 430
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 116, 251
BtgI CCRYGG 1 cut(s) 494
BtgZI GCGATG 1 cut(s) 211
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 326, 423, 427
CfoI GCGC 1 cut(s) 138
Cfr10I RCCGGY 2 cut(s) 421, 449
Cfr13I GGNCC 3 cut(s) 175, 289, 319
CseI GACGC 1 cut(s) 127
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 3 cut(s) 142, 190, 505
CviJI RGCY 9 cut(s) 55, 116, 251, 269, 338, 391, 421, 464, 480
CviKI_1 RGCY 9 cut(s) 55, 116, 251, 269, 338, 391, 421, 464, 480
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 251
Eco47I GGWCC 3 cut(s) 175, 289, 319
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 162, 285
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 3 cut(s) 145, 193, 508
FaiI YATR 3 cut(s) 143, 191, 506
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 141, 189, 504
Fnu4HI GCNGC 5 cut(s) 329, 410, 413, 416, 419
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 5 cut(s) 329, 410, 413, 416, 419
FspBI CTAG 1 cut(s) 517
GlaI GCGC 1 cut(s) 137
GluI GCNGC 5 cut(s) 329, 410, 413, 416, 419
HaeIII GGCC 2 cut(s) 116, 251
HapII CCGG 2 cut(s) 422, 450
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 145, 193, 508
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 3 cut(s) 146, 159, 306
HpaII CCGG 2 cut(s) 422, 450
HphI GGTGA 2 cut(s) 67, 250
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 60, 305
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 365, 479
HpyAV CCTTC 3 cut(s) 12, 166, 241
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 415, 418
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 145, 193, 508
HspAI GCGC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 4 cut(s) 274, 406, 485, 498
Lsp1109I GCAGC 4 cut(s) 340, 424, 427, 430
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 517
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 125
MbiI CCGCTC 1 cut(s) 409
MboI GATC 1 cut(s) 123
MboII GAAGA 4 cut(s) 212, 214, 217, 377
MlyI GAGTC 1 cut(s) 155
MroNI GCCGGC 1 cut(s) 421
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 2 cut(s) 422, 450
MspR9I CCNGG 2 cut(s) 164, 287
MvaI CCWGG 2 cut(s) 164, 287
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 61, 415, 418
NaeI GCCGGC 1 cut(s) 423
NdeII GATC 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 3 cut(s) 145, 193, 508
NlaIV GGNNCC 3 cut(s) 270, 481, 512
NmuCI GTSAC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 369
PdiI GCCGGC 1 cut(s) 423
PfeI GAWTC 2 cut(s) 159, 306
PflFI GACNNNGTC 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 5 cut(s) 330, 411, 414, 417, 420
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 162, 285
PspGI CCWGG 2 cut(s) 162, 285
PspN4I GGNNCC 3 cut(s) 270, 481, 512
PspPI GGNCC 3 cut(s) 175, 289, 319
PspPPI RGGWCCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 349
SatI GCNGC 5 cut(s) 329, 410, 413, 416, 419
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 3 cut(s) 175, 289, 319
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 164, 287
SetI ASST 7 cut(s) 45, 57, 168, 177, 258, 294, 512
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 3 cut(s) 175, 289, 319
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 7 cut(s) 178, 216, 322, 354, 409, 483, 514
SspMI CTAG 1 cut(s) 517
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 162, 285
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 126, 168, 363
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 2 cut(s) 159, 306
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 4 cut(s) 328, 412, 415, 418
Tsp45I GTSAC 1 cut(s) 256
TspGWI ACGGA 2 cut(s) 171, 392
Tth111I GACNNNGTC 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 175, 289, 319
XspI CTAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.