Rroxscaffold_2G00129200

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013552
Physical Location & Seq
Forward (+)
65033845 .. 65034351
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129200.1

Sequence Viewer

Length: 507 bp
ATGGGAAGCCGATTGGGGAGCAGAGTAGTCCACTTCCCGAACCTACCCATCAAGCTCCTAATGCCCACGAGCTTCACCAACATCAGAGAATTCGCCCTCAAAACCATCCCCTCCGCCTCCAAGATCGAAATCAAGCGCGTCCTCGAGTCCCTCTACGGCTTCGAGATCGACAAGGTCCGAACCCTAAACATGGACGGCAGGAAGAAGAAGCGGGGCGGCCTGCTGATCGCGAAGCCCGACTACAAGAAGGCCTACGTCACGCTGAAGTCACCGCTGTCGCTGAACTCGGCGCTCTATCCGATTGTTGCTATTGAGCAGGAGAAGAAGCAGATGGTGGGGAAGAAGTCGAGCAAGTCTAGCGTCGTCGAGGAAGGCGAGGGGAAGAAGCATTGGCTGGATGGGAAGGAGGAGAAGGAGGAGGTGAGGAGGGGAAGAAATGAGAGGGGGTCTCCGGTTTTCGGCGACGGCAAGGAGAAGTTTCCATGGAGCAATATGAGGTTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L23

Protein Analysis

168

Amino Acids

19.15

Weight (kDa)

10.09

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23 PF00276 30 - 90 2.6e-14 Ribosomal protein L23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39880
fragaria_vesca FvH4_1g20880 FvH4_1g20880 FvH4_1g20880
malus_domestica MD01G1030100.v1.1 MD06G1167700.v1.1 MD15G1324000.v1.1
prunus_persica Prupe.6G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0113491
rosa_laevigata RLG00000018069
rosa_multiflora Rmu_sc0007415.1_g000021
rosa_roxburghii Rroxscaffold_2G00129200
rosa_rugosa Rorug02G0187900
rosa_samantha Rh2AG242400 Rh2CG246600 Rh2DG250400
rosa_wichuraiana Rw0G018890 Rw2G018950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 138, 230
AciI CCGC 4 cut(s) 114, 211, 216, 272
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 190, 458
AluBI AGCT 2 cut(s) 55, 72
AluI AGCT 2 cut(s) 55, 72
Alw26I GTCTC 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 2 cut(s) 217, 249
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 2 cut(s) 138, 292
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 67, 261, 433
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BauI CACGAG 1 cut(s) 67
BccI CCATC 4 cut(s) 56, 113, 325, 392
BceAI ACGGC 3 cut(s) 172, 211, 481
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 2 cut(s) 357, 505
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BsaBI GATNNNNATC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 482
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 458
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 2 cut(s) 105, 403
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 190, 458
BseRI GAGGAG 3 cut(s) 422, 431, 439
Bsh1236I CGCG 2 cut(s) 138, 230
BshFI GGCC 2 cut(s) 219, 251
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 190, 458
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 219, 251
Bso31I GGTCTC 1 cut(s) 453
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 3 cut(s) 123, 165, 225
Bsp19I CCATGG 1 cut(s) 482
Bsp68I TCGCGA 1 cut(s) 230
BspACI CCGC 4 cut(s) 114, 211, 216, 272
BspANI GGCC 2 cut(s) 219, 251
BspFNI CGCG 2 cut(s) 138, 230
BspTNI GGTCTC 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 3 cut(s) 123, 165, 225
BssSI CACGAG 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 2 cut(s) 105, 403
BstFNI CGCG 2 cut(s) 138, 230
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 2 cut(s) 138, 292
BstKTI GATC 3 cut(s) 126, 168, 228
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 3 cut(s) 123, 165, 225
BstMWI GCNNNNNNNGC 2 cut(s) 61, 357
BstUI CGCG 2 cut(s) 138, 230
BsuRI GGCC 2 cut(s) 219, 251
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 2 cut(s) 105, 403
BtuMI TCGCGA 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 2 cut(s) 138, 292
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 2 cut(s) 127, 349
CviAII CATG 2 cut(s) 190, 483
CviJI RGCY 8 cut(s) 9, 55, 72, 159, 219, 235, 251, 394
CviKI_1 RGCY 8 cut(s) 9, 55, 72, 159, 219, 235, 251, 394
DpnI GATC 3 cut(s) 125, 167, 227
DpnII GATC 3 cut(s) 123, 165, 225
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 482
Eco147I AGGCCT 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 2 cut(s) 193, 486
FaiI YATR 3 cut(s) 191, 484, 494
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 189, 482
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 2 cut(s) 92, 410
Fsp4HI GCNGC 1 cut(s) 217
FspBI CTAG 2 cut(s) 357, 505
GlaI GCGC 2 cut(s) 137, 291
GluI GCNGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 2 cut(s) 219, 251
HapII CCGG 1 cut(s) 452
HgaI GACGC 2 cut(s) 127, 349
HhaI GCGC 2 cut(s) 138, 292
Hin1II CATG 2 cut(s) 193, 486
Hin6I GCGC 2 cut(s) 136, 290
HinP1I GCGC 2 cut(s) 136, 290
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 452
HphI GGTGA 3 cut(s) 67, 261, 433
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 86, 179, 300
Hpy188III TCNNGA 3 cut(s) 37, 163, 229
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 3 cut(s) 365, 368, 467
HpyAV CCTTC 4 cut(s) 241, 365, 397, 406
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 357
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 193, 486
HspAI GCGC 2 cut(s) 136, 290
Kzo9I GATC 3 cut(s) 123, 165, 225
LmnI GCTCC 3 cut(s) 18, 60, 486
LpnPI CCDG 5 cut(s) 184, 233, 302, 380, 465
MaeI CTAG 2 cut(s) 357, 505
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 256, 267
MalI GATC 3 cut(s) 125, 167, 227
MboI GATC 3 cut(s) 123, 165, 225
MboII GAAGA 6 cut(s) 214, 217, 334, 352, 394, 444
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 1 cut(s) 452
MvnI CGCG 2 cut(s) 138, 230
MwoI GCNNNNNNNGC 2 cut(s) 61, 357
NcoI CCATGG 1 cut(s) 482
NdeII GATC 3 cut(s) 123, 165, 225
NlaIII CATG 2 cut(s) 193, 486
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 2 cut(s) 256, 267
NruI TCGCGA 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 143
PceI AGGCCT 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 372
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 218
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 173
RruI TCGCGA 1 cut(s) 230
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 3 cut(s) 123, 165, 225
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 155
SetI ASST 7 cut(s) 45, 57, 74, 177, 258, 423, 500
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 89
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 4 cut(s) 114, 211, 216, 272
SspMI CTAG 2 cut(s) 357, 505
StuI AGGCCT 1 cut(s) 251
StyI CCWWGG 1 cut(s) 482
TaiI ACGT 1 cut(s) 258
TaqI TCGA 6 cut(s) 126, 144, 162, 168, 347, 366
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 219
TseFI GTSAC 2 cut(s) 256, 267
Tsp45I GTSAC 2 cut(s) 256, 267
Tth111I GACNNNGTC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 143
XspI CTAG 2 cut(s) 357, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.