Prupe.6G187100_v2.0.a1

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013552
Physical Location & Seq
Forward (+)
19566740 .. 19567402
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G187100.1

Sequence Viewer

Length: 498 bp
ATGGGAAGTAGATTGGGGAGGAGGGTAATTCACTTCGCAAACCTACCCATCAAGCTCTTAATGCCCACCAACTTCACCAACATCAGAGAAATCGCTCTCAAAACCATCCCATCAGCTTCCAAGGTCGAAATCAAGCGCGTCCTCGAATCCCTCTACGGCTTCCAGGTCGAAAAGGTCCGTACGCTCAACATGGAGGGCAAGAAGAAGAAGCGCGGTGGCCTATTGTTCGCCAGACCCAATTACAAGAAGGCCTACGTCACGCTCAAGAACCCACTCTCGCTCTCTCAGGACCTCTACCCTATTGGAGTCGTCGAGCAGGAGAGGAAGCAGACGAGCAAGCAATCCAAGTCCAGCGTCGTCGAAGAAGGTGAAACTGAGAAGCATTGGCTTTACGGGAAGGACAAGGAGGAACCTTGGAGGGTTAAGAACGACAAGGGTTCTGCTGTTTTCGGCGACGGTGTGGCCAAATTTCCCTGGAGCACCATGAGGTTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L23

Protein Analysis

166

Amino Acids

18.96

Weight (kDa)

10.12

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39880
fragaria_vesca FvH4_1g20880 FvH4_1g20880 FvH4_1g20880
malus_domestica MD01G1030100.v1.1 MD06G1167700.v1.1 MD15G1324000.v1.1
prunus_persica Prupe.6G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0113491
rosa_laevigata RLG00000018069
rosa_multiflora Rmu_sc0007415.1_g000021
rosa_roxburghii Rroxscaffold_2G00129200
rosa_rugosa Rorug02G0187900
rosa_samantha Rh2AG242400 Rh2CG246600 Rh2DG250400
rosa_wichuraiana Rw0G018890 Rw2G018950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 138, 213
AciI CCGC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 467
AfaI GTAC 1 cut(s) 181
AjnI CCWGG 2 cut(s) 162, 473
AluBI AGCT 2 cut(s) 55, 116
AluI AGCT 2 cut(s) 55, 116
Alw21I GWGCWC 1 cut(s) 482
AoxI GGCC 3 cut(s) 217, 249, 462
ApoI RAATTY 1 cut(s) 467
AspLEI GCGC 2 cut(s) 138, 213
AspS9I GGNCC 2 cut(s) 175, 289
AsuHPI GGTGA 2 cut(s) 67, 380
AvaII GGWCC 2 cut(s) 175, 289
BalI TGGCCA 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 482
BccI CCATC 3 cut(s) 56, 113, 118
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 164, 475
BfaI CTAG 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 164, 475
Bme18I GGWCC 2 cut(s) 175, 289
BmgT120I GGNCC 2 cut(s) 175, 289
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 2 cut(s) 164, 475
BpmI CTGGAG 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 120, 413, 473
BseBI CCWGG 2 cut(s) 164, 475
BseDI CCNNGG 3 cut(s) 120, 413, 473
BseGI GGATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 299, 366
BseRI GAGGAG 1 cut(s) 34
Bsh1236I CGCG 2 cut(s) 138, 213
BshFI GGCC 3 cut(s) 219, 251, 464
BsiHKAI GWGCWC 1 cut(s) 482
BsiWI CGTACG 1 cut(s) 179
BsnI GGCC 3 cut(s) 219, 251, 464
Bsp1286I GDGCHC 1 cut(s) 482
BspACI CCGC 1 cut(s) 213
BspANI GGCC 3 cut(s) 219, 251, 464
BspCNI CTCAG 2 cut(s) 298, 367
BspFNI CGCG 2 cut(s) 138, 213
BspLI GGNNCC 1 cut(s) 411
BssECI CCNNGG 3 cut(s) 120, 413, 473
BssT1I CCWWGG 2 cut(s) 120, 413
Bst2UI CCWGG 2 cut(s) 164, 475
Bst4CI ACNGT 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 285, 375
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 2 cut(s) 138, 213
BstHHI GCGC 2 cut(s) 138, 213
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 2 cut(s) 164, 475
BstSCI CCNGG 2 cut(s) 162, 473
BstUI CGCG 2 cut(s) 138, 213
BsuRI GGCC 3 cut(s) 219, 251, 464
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 338
CfoI GCGC 2 cut(s) 138, 213
Cfr13I GGNCC 2 cut(s) 175, 289
CseI GACGC 2 cut(s) 127, 343
Csp6I GTAC 1 cut(s) 180
CviAII CATG 2 cut(s) 190, 484
CviJI RGCY 7 cut(s) 55, 116, 159, 219, 251, 388, 464
CviKI_1 RGCY 7 cut(s) 55, 116, 159, 219, 251, 388, 464
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 2 cut(s) 285, 375
EaeI YGGCCR 1 cut(s) 462
Eco130I CCWWGG 2 cut(s) 120, 413
Eco147I AGGCCT 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 175, 289
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 162, 473
EcoT14I CCWWGG 2 cut(s) 120, 413
ErhI CCWWGG 2 cut(s) 120, 413
FaeI CATG 2 cut(s) 193, 487
FaiI YATR 2 cut(s) 191, 485
FatI CATG 2 cut(s) 189, 483
FokI GGATG 1 cut(s) 92
FspBI CTAG 1 cut(s) 496
GlaI GCGC 2 cut(s) 137, 212
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 3 cut(s) 219, 251, 464
HgaI GACGC 2 cut(s) 127, 343
HhaI GCGC 2 cut(s) 138, 213
Hin1II CATG 2 cut(s) 193, 487
Hin6I GCGC 2 cut(s) 136, 211
HinP1I GCGC 2 cut(s) 136, 211
HinfI GANTC 2 cut(s) 146, 306
HphI GGTGA 2 cut(s) 67, 380
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 265, 287
Hpy99I CGWCG 4 cut(s) 314, 359, 362, 458
HpyAV CCTTC 3 cut(s) 241, 359, 391
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 2 cut(s) 285, 375
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 193, 487
HspAI GCGC 2 cut(s) 136, 211
LmnI GCTCC 1 cut(s) 477
LpnPI CCDG 8 cut(s) 149, 176, 244, 272, 302, 364, 460, 487
MaeI CTAG 1 cut(s) 496
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 3 cut(s) 214, 217, 374
MhlI GDGCHC 1 cut(s) 482
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 3 cut(s) 27, 238, 467
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 1 cut(s) 315
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 2 cut(s) 59, 423
Msp20I TGGCCA 1 cut(s) 464
MspR9I CCNGG 2 cut(s) 164, 475
MvaI CCWGG 2 cut(s) 164, 475
MvnI CGCG 2 cut(s) 138, 213
MwoI GCNNNNNNNGC 1 cut(s) 61
NlaIII CATG 2 cut(s) 193, 487
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 251
PfeI GAWTC 1 cut(s) 146
Pfl23II CGTACG 1 cut(s) 179
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 162, 473
PspGI CCWGG 2 cut(s) 162, 473
PspLI CGTACG 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 2 cut(s) 175, 289
PspPPI RGGWCCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 59, 423
Sau96I GGNCC 2 cut(s) 175, 289
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 164, 475
SduI GDGCHC 1 cut(s) 482
SinI GGWCC 2 cut(s) 175, 289
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 3 cut(s) 27, 238, 467
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 496
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 162, 473
StyI CCWWGG 2 cut(s) 120, 413
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 126, 144, 168, 312, 360
TasI AATT 3 cut(s) 27, 238, 467
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 59, 423
Tru9I TTAA 2 cut(s) 59, 423
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 175, 289
XapI RAATTY 1 cut(s) 467
XspI CTAG 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.