RLG00000018069

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013552
Physical Location & Seq
Reverse (-)
25028599 .. 25029102
504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018069

Sequence Viewer

Length: 504 bp
ATGGGAAGCCGATTGGGGAGCAGAGTAGTCCACTTCCCAAACCTACCCATCAAGCTCCTAATGCCCACGAGCTTCACCAACATCAGAGAATTCGCCCTCAAAACCATCCCCTCCGCCTCCAAGATCGAAATCAAGCGCGTCCTCGAGTCCCTCTACGGCTTCGAGATCGACAAGGTCCGAACCCTAAACATGGACGGCAAGAAGAAGAAGCGCGGCGGCCTGCTGATCGCGAAGCCCGACTACAAGAAGGCCTACGTCACGCTGAGGTCACCGCTGTCGCTGAACTCGGGGCTCTATCCGATCGGTGCTATTGAGCAGGAGAGGAAGCAGATGGTGGGGAAGAAGTCGAGCAAGTCTAGCGTCGTCGAGGAAGGCGAGGGGAAGAAGCATTGGCTGGATGGGAAGGAGAAGGAGGAGGTGAGGAGGGGGAGATATGAGAGGGGATCTCCGGTTTTCGGCGACGGCAAGGAGAAGTTTCCGTGGAGCAATATGAGGTTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L23

Protein Analysis

168

Amino Acids

19.04

Weight (kDa)

10.15

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23 PF00276 30 - 89 1e-14 Ribosomal protein L23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39880
fragaria_vesca FvH4_1g20880 FvH4_1g20880 FvH4_1g20880
malus_domestica MD01G1030100.v1.1 MD06G1167700.v1.1 MD15G1324000.v1.1
prunus_persica Prupe.6G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0113491
rosa_laevigata RLG00000018069
rosa_multiflora Rmu_sc0007415.1_g000021
rosa_roxburghii Rroxscaffold_2G00129200
rosa_rugosa Rorug02G0187900
rosa_samantha Rh2AG242400 Rh2CG246600 Rh2DG250400
rosa_wichuraiana Rw0G018890 Rw2G018950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 138, 213, 230
AciI CCGC 4 cut(s) 114, 213, 216, 272
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 190, 455
AluBI AGCT 2 cut(s) 55, 72
AluI AGCT 2 cut(s) 55, 72
AlwI GGATC 1 cut(s) 451
Ama87I CYCGRG 2 cut(s) 143, 286
AoxI GGCC 2 cut(s) 217, 249
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 2 cut(s) 138, 213
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 67, 261, 430
AvaI CYCGRG 2 cut(s) 143, 286
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 294
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BauI CACGAG 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 263
BccI CCATC 4 cut(s) 56, 113, 325, 392
BceAI ACGGC 3 cut(s) 172, 211, 478
BfaI CTAG 2 cut(s) 357, 502
BisI GCNGC 2 cut(s) 214, 217
BlsI GCNGC 2 cut(s) 215, 218
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 2 cut(s) 143, 286
BmgT120I GGNCC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 430, 462
Bpu10I CCTNAGC 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 479
BsaWI WCCGGW 1 cut(s) 448
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 455
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 2 cut(s) 105, 403
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 190, 455
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 2 cut(s) 428, 436
Bsh1236I CGCG 3 cut(s) 138, 213, 230
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 219, 251
BsiEI CGRYCG 1 cut(s) 303
BsiHKCI CYCGRG 2 cut(s) 143, 286
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 190, 455
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 219, 251
BsoBI CYCGRG 2 cut(s) 143, 286
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 5 cut(s) 123, 165, 225, 300, 443
Bsp68I TCGCGA 1 cut(s) 230
BspACI CCGC 4 cut(s) 114, 213, 216, 272
BspANI GGCC 2 cut(s) 219, 251
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 3 cut(s) 138, 213, 230
BspPI GGATC 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 5 cut(s) 123, 165, 225, 300, 443
BssSI CACGAG 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 479
BstEII GGTNACC 1 cut(s) 267
BstF5I GGATG 2 cut(s) 105, 403
BstFNI CGCG 3 cut(s) 138, 213, 230
BstHHI GCGC 2 cut(s) 138, 213
BstKTI GATC 5 cut(s) 126, 168, 228, 303, 446
BstMBI GATC 5 cut(s) 123, 165, 225, 300, 443
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 2 cut(s) 61, 357
BstPI GGTNACC 1 cut(s) 267
BstUI CGCG 3 cut(s) 138, 213, 230
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 2 cut(s) 219, 251
BtgI CCRYGG 1 cut(s) 479
BtsCI GGATG 2 cut(s) 105, 403
BtuMI TCGCGA 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 2 cut(s) 138, 213
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 2 cut(s) 127, 349
CviAII CATG 1 cut(s) 190
CviJI RGCY 9 cut(s) 9, 55, 72, 159, 219, 235, 251, 292, 394
CviKI_1 RGCY 9 cut(s) 9, 55, 72, 159, 219, 235, 251, 292, 394
DdeI CTNAG 1 cut(s) 263
DpnI GATC 5 cut(s) 125, 167, 227, 302, 445
DpnII GATC 5 cut(s) 123, 165, 225, 300, 443
EciI GGCGGA 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 2 cut(s) 143, 286
Eco91I GGTNACC 1 cut(s) 267
EcoO65I GGTNACC 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 294
FaeI CATG 1 cut(s) 193
FaiI YATR 3 cut(s) 191, 435, 491
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 214, 217
FokI GGATG 2 cut(s) 92, 410
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 2 cut(s) 214, 217
FspBI CTAG 2 cut(s) 357, 502
GlaI GCGC 2 cut(s) 137, 212
GluI GCNGC 2 cut(s) 214, 217
HaeIII GGCC 2 cut(s) 219, 251
HapII CCGG 1 cut(s) 449
HgaI GACGC 2 cut(s) 127, 349
HhaI GCGC 2 cut(s) 138, 213
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 2 cut(s) 136, 211
HinP1I GCGC 2 cut(s) 136, 211
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 449
HphI GGTGA 3 cut(s) 67, 261, 430
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 86, 179, 300
Hpy188III TCNNGA 2 cut(s) 163, 229
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 3 cut(s) 365, 368, 464
HpyAV CCTTC 4 cut(s) 241, 365, 397, 403
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 357
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 2 cut(s) 136, 211
Kzo9I GATC 5 cut(s) 123, 165, 225, 300, 443
LmnI GCTCC 3 cut(s) 18, 60, 483
LpnPI CCDG 4 cut(s) 233, 302, 380, 462
MaeI CTAG 2 cut(s) 357, 502
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 256, 267
MalI GATC 5 cut(s) 125, 167, 227, 302, 445
MboI GATC 5 cut(s) 123, 165, 225, 300, 443
MboII GAAGA 4 cut(s) 214, 217, 352, 394
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 1 cut(s) 449
MvnI CGCG 3 cut(s) 138, 213, 230
MwoI GCNNNNNNNGC 2 cut(s) 61, 357
NdeII GATC 5 cut(s) 123, 165, 225, 300, 443
NlaIII CATG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 256, 267
NruI TCGCGA 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 143
PceI AGGCCT 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 372
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 215, 218
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PspEI GGTNACC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 143
PsuI RGATCY 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 173
PvuI CGATCG 1 cut(s) 303
RruI TCGCGA 1 cut(s) 230
SatI GCNGC 2 cut(s) 214, 217
Sau3AI GATC 5 cut(s) 123, 165, 225, 300, 443
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 294
SetI ASST 8 cut(s) 45, 57, 74, 177, 258, 269, 420, 497
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 89
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 4 cut(s) 114, 213, 216, 272
SspMI CTAG 2 cut(s) 357, 502
StuI AGGCCT 1 cut(s) 251
TaiI ACGT 1 cut(s) 258
TaqI TCGA 6 cut(s) 126, 144, 162, 168, 347, 366
TasI AATT 1 cut(s) 89
TauI GCSGC 2 cut(s) 216, 219
TseFI GTSAC 2 cut(s) 256, 267
Tsp45I GTSAC 2 cut(s) 256, 267
TspGWI ACGGA 1 cut(s) 468
Tth111I GACNNNGTC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 143
XspI CTAG 2 cut(s) 357, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.