FvH4_1g20880

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013552
Physical Location & Seq
Reverse (-)
13007837 .. 13011112
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20880.t3

Sequence Viewer

Length: 504 bp
ATGGGAAGCCGACTGGGGAGCAGAGTAGTCCACTTCCCGAACCTCCCAATCAAACTCCTGATGCCAACCACCTTCACCAACATCACCGAATTCGCACTCAAAACTATCCCCTCCGCCTCCAAGATCGAAATCAAGCGCGTCCTCGAGTCCCTCTACGGCTTCGACATCGAGAAAGTCCGAACCCTAAATATGGACGGCAAGAATAAGAAGCGCGGCGGCCTCTTGATCGCCAAGCCCGCCTACAAGAAGGCCTACGTCACGCTCAGGTCACCGCTCTCGCTGAACCCGGAGCTGTACCCGATCGGAGCCGTGGAGGAGGAGAGGAAGGCGACGGCGGCGGGGAAGAAGGGGAGCAAGTCGAGCGTGGTGGAGGAGGGAGAGGGGAAGAAGCATTGGCTGGATGGGGAGGAGAAGGAGAAGGTGAGAAGGAAGAGGTTTGATGGCTCTCCGGTTTTCGGCGACGGCAAGGAGAAGTTTCCCTGGAGCAATATGAGGTTCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L23

Protein Analysis

168

Amino Acids

18.82

Weight (kDa)

9.99

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23 PF00276 30 - 89 5.7e-14 Ribosomal protein L23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39880
fragaria_vesca FvH4_1g20880 FvH4_1g20880 FvH4_1g20880
malus_domestica MD01G1030100.v1.1 MD06G1167700.v1.1 MD15G1324000.v1.1
prunus_persica Prupe.6G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0113491
rosa_laevigata RLG00000018069
rosa_multiflora Rmu_sc0007415.1_g000021
rosa_roxburghii Rroxscaffold_2G00129200
rosa_rugosa Rorug02G0187900
rosa_samantha Rh2AG242400 Rh2CG246600 Rh2DG250400
rosa_wichuraiana Rw0G018890 Rw2G018950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 2 cut(s) 138, 213
AciI CCGC 7 cut(s) 114, 213, 216, 237, 272, 335, 338
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 190, 455
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 2 cut(s) 217, 249
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 2 cut(s) 138, 213
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 4 cut(s) 67, 76, 261, 433
AvaI CYCGRG 1 cut(s) 143
BccI CCATC 2 cut(s) 395, 434
BceAI ACGGC 5 cut(s) 172, 211, 293, 348, 478
BciT130I CCWGG 1 cut(s) 481
BcnI CCSGG 1 cut(s) 287
BisI GCNGC 3 cut(s) 214, 217, 336
BlsI GCNGC 3 cut(s) 215, 218, 337
Bme1390I CCNGG 2 cut(s) 287, 481
BmeT110I CYCGRG 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 307, 497
BmrFI CCNGG 2 cut(s) 287, 481
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 309, 479
BsaWI WCCGGW 2 cut(s) 448, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 455
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 2 cut(s) 309, 479
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 190, 455
BseMII CTCAG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 4 cut(s) 329, 332, 386, 422
Bsh1236I CGCG 2 cut(s) 138, 213
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 219, 251
BsiEI CGRYCG 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 3 cut(s) 287, 449, 499
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 190, 455
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 219, 251
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 3 cut(s) 123, 225, 300
BspACI CCGC 7 cut(s) 114, 213, 216, 237, 272, 335, 338
BspANI GGCC 2 cut(s) 219, 251
BspCNI CTCAG 1 cut(s) 276
BspFNI CGCG 2 cut(s) 138, 213
BspLI GGNNCC 2 cut(s) 307, 497
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 309, 479
BssMI GATC 3 cut(s) 123, 225, 300
Bst2UI CCWGG 1 cut(s) 481
Bst6I CTCTTC 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 309
BstEII GGTNACC 1 cut(s) 267
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 2 cut(s) 138, 213
BstHHI GCGC 2 cut(s) 138, 213
BstKTI GATC 3 cut(s) 126, 228, 303
BstMBI GATC 3 cut(s) 123, 225, 300
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 236, 335, 360
BstNI CCWGG 1 cut(s) 481
BstPI GGTNACC 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 285, 479
BstUI CGCG 2 cut(s) 138, 213
BsuRI GGCC 2 cut(s) 219, 251
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 2 cut(s) 138, 213
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 295
CviJI RGCY 9 cut(s) 9, 159, 219, 235, 251, 292, 308, 397, 444
CviKI_1 RGCY 9 cut(s) 9, 159, 219, 235, 251, 292, 308, 397, 444
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 263
DpnI GATC 3 cut(s) 125, 227, 302
DpnII GATC 3 cut(s) 123, 225, 300
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
EciI GGCGGA 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 143
Eco91I GGTNACC 1 cut(s) 267
EcoO65I GGTNACC 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 479
FaiI YATR 2 cut(s) 191, 491
FaqI GGGAC 1 cut(s) 133
FauI CCCGC 2 cut(s) 244, 331
Fnu4HI GCNGC 3 cut(s) 214, 217, 336
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 3 cut(s) 214, 217, 336
GlaI GCGC 2 cut(s) 137, 212
GluI GCNGC 3 cut(s) 214, 217, 336
GsuI CTGGAG 1 cut(s) 502
HaeIII GGCC 2 cut(s) 219, 251
HapII CCGG 3 cut(s) 287, 449, 499
HgaI GACGC 1 cut(s) 127
HhaI GCGC 2 cut(s) 138, 213
Hin6I GCGC 2 cut(s) 136, 211
HinP1I GCGC 2 cut(s) 136, 211
HinfI GANTC 1 cut(s) 146
HpaII CCGG 3 cut(s) 287, 449, 499
HphI GGTGA 4 cut(s) 67, 76, 261, 433
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 179, 305
Hpy188III TCNNGA 4 cut(s) 37, 58, 169, 223
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 334, 464
HpyAV CCTTC 7 cut(s) 82, 241, 319, 340, 406, 412, 420
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 335, 360
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 1 cut(s) 255
HspAI GCGC 2 cut(s) 136, 211
Kzo9I GATC 3 cut(s) 123, 225, 300
LmnI GCTCC 5 cut(s) 18, 289, 305, 351, 483
LpnPI CCDG 7 cut(s) 71, 250, 300, 383, 462, 466, 493
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 256, 267
MalI GATC 3 cut(s) 125, 227, 302
MbiI CCGCTC 1 cut(s) 274
MboI GATC 3 cut(s) 123, 225, 300
MboII GAAGA 3 cut(s) 355, 397, 442
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 155
MspI CCGG 3 cut(s) 287, 449, 499
MspR9I CCNGG 2 cut(s) 287, 481
MvaI CCWGG 1 cut(s) 481
MvnI CGCG 2 cut(s) 138, 213
MwoI GCNNNNNNNGC 3 cut(s) 236, 335, 360
NciI CCSGG 1 cut(s) 287
NdeII GATC 3 cut(s) 123, 225, 300
NlaIV GGNNCC 2 cut(s) 307, 497
NmuCI GTSAC 2 cut(s) 256, 267
PaeR7I CTCGAG 1 cut(s) 143
PceI AGGCCT 1 cut(s) 251
PkrI GCNGC 3 cut(s) 215, 218, 337
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 479
PspEI GGTNACC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 307, 497
PspXI VCTCGAGB 1 cut(s) 143
PvuI CGATCG 1 cut(s) 303
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SatI GCNGC 3 cut(s) 214, 217, 336
Sau3AI GATC 3 cut(s) 123, 225, 300
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 287, 481
SetI ASST 8 cut(s) 45, 74, 258, 269, 294, 423, 437, 497
SfaNI GCATC 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 89
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 7 cut(s) 114, 213, 216, 237, 272, 335, 338
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 285, 479
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 126, 144, 162, 168, 359
TasI AATT 1 cut(s) 89
TauI GCSGC 3 cut(s) 216, 219, 338
TseFI GTSAC 2 cut(s) 256, 267
Tsp45I GTSAC 2 cut(s) 256, 267
XapI RAATTY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.