MD15G1324000.v1.1

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013552
Physical Location & Seq
Reverse (-)
34492955 .. 34493527
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1324000.v1.1.491

Sequence Viewer

Length: 519 bp
ATGGGAAGCAGATTGGGAAGGAGGGTAGTCCACTTCGCGAACCTACCCATCAAGCTTTTGATGCCCAACAATTTCGCCAACATCACAGAAATCGCTCTCAAAACTATCCCATCGGCCTCCAAGATCGAAATCAAGCTCGTCATGGAGTCCCTCTACGGCTTCCAGGTCGACAAGGTCCACACCCTAAACATGGAGGGCAAGAAGAAGAAGCGCAGCGGTCTTCTCATCGCAAAACCCGACTACAAGAAGGCCTACGTCACCCTCAAGGGCCCCCTCTCCCTCTCCCAGGACCTCTATCCCATCGGAATCGTCCAGCAGGACCGCAAGCAGCAGGCGGCCAACCAGTCCAAGTCTGCCGTTGTCGAAGAGGGCGAGACCGAGAAGCATTGGCTTTACGGGAACAAGGAACGGCAGCAGCAGCCGCAGAGCGCTCGCAGGGGTAAGAGCAGCGATAAGGGTTCGGCTGTTTTCGGCGAGGGCGCCGCCAAGTTTCCCTGGAGCAACATGAGGTTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L23

Protein Analysis

173

Amino Acids

19.35

Weight (kDa)

10.1

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L23 PF00276 30 - 89 5.4e-14 Ribosomal protein L23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39880
fragaria_vesca FvH4_1g20880 FvH4_1g20880 FvH4_1g20880
malus_domestica MD01G1030100.v1.1 MD06G1167700.v1.1 MD15G1324000.v1.1
prunus_persica Prupe.6G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0113491
rosa_laevigata RLG00000018069
rosa_multiflora Rmu_sc0007415.1_g000021
rosa_roxburghii Rroxscaffold_2G00129200
rosa_rugosa Rorug02G0187900
rosa_samantha Rh2AG242400 Rh2CG246600 Rh2DG250400
rosa_wichuraiana Rw0G018890 Rw2G018950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 168
AccII CGCG 1 cut(s) 38
AciI CCGC 5 cut(s) 216, 322, 335, 422, 483
AcoI YGGCCR 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 480
AfeI AGCGCT 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 190, 286
AjnI CCWGG 3 cut(s) 162, 285, 494
AluBI AGCT 2 cut(s) 55, 136
AluI AGCT 2 cut(s) 55, 136
Alw26I GTCTC 1 cut(s) 368
Aor51HI AGCGCT 1 cut(s) 430
AoxI GGCC 4 cut(s) 114, 249, 268, 336
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 6 cut(s) 213, 328, 412, 415, 418, 447
AspLEI GCGC 3 cut(s) 213, 431, 482
AspS9I GGNCC 5 cut(s) 175, 268, 269, 289, 319
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 3 cut(s) 175, 289, 319
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 6 cut(s) 225, 340, 424, 427, 430, 459
BccI CCATC 3 cut(s) 56, 118, 308
BceAI ACGGC 3 cut(s) 172, 341, 425
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 3 cut(s) 164, 287, 496
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 1 cut(s) 517
BfoI RGCGCY 2 cut(s) 432, 483
BisI GCNGC 9 cut(s) 214, 329, 336, 413, 416, 419, 422, 448, 483
BlsI GCNGC 9 cut(s) 215, 330, 337, 414, 417, 420, 423, 449, 484
Bme1390I CCNGG 3 cut(s) 164, 287, 496
Bme18I GGWCC 3 cut(s) 175, 289, 319
BmgT120I GGNCC 5 cut(s) 175, 268, 269, 289, 319
BmiI GGNNCC 3 cut(s) 270, 271, 481
BmrFI CCNGG 3 cut(s) 164, 287, 496
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 285, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 286
Bse1I ACTGG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 3 cut(s) 164, 287, 496
BseDI CCNNGG 2 cut(s) 285, 494
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 190, 286
BseNI ACTGG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 6 cut(s) 225, 340, 424, 427, 430, 459
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 4 cut(s) 116, 251, 270, 338
BshNI GGYRCC 1 cut(s) 479
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 190, 286
BsmAI GTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 4 cut(s) 116, 251, 270, 338
Bso31I GGTCTC 1 cut(s) 368
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 123
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 5 cut(s) 216, 322, 335, 422, 483
BspANI GGCC 4 cut(s) 116, 251, 270, 338
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 270, 271, 481
BspT107I GGYRCC 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 285, 494
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 480
Bst2UI CCWGG 3 cut(s) 164, 287, 496
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 326, 333, 433
BstENI CCTNNNNNAGG 1 cut(s) 284
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 2 cut(s) 432, 483
BstHHI GCGC 3 cut(s) 213, 431, 482
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 61, 418, 421
BstNI CCWGG 3 cut(s) 164, 287, 496
BstSCI CCNGG 3 cut(s) 162, 285, 494
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 6 cut(s) 225, 340, 424, 427, 430, 459
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 4 cut(s) 116, 251, 270, 338
BtgZI GCGATG 1 cut(s) 211
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 3 cut(s) 326, 333, 433
CfoI GCGC 3 cut(s) 213, 431, 482
Cfr13I GGNCC 5 cut(s) 175, 268, 269, 289, 319
CviAII CATG 3 cut(s) 142, 190, 505
DinI GGCGCC 1 cut(s) 481
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco147I AGGCCT 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 3 cut(s) 175, 289, 319
Eco47III AGCGCT 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 3 cut(s) 268, 269, 289
EcoRII CCWGG 3 cut(s) 162, 285, 494
EcoT38I GRGCYC 1 cut(s) 272
EgeI GGCGCC 1 cut(s) 481
EheI GGCGCC 1 cut(s) 481
FaeI CATG 3 cut(s) 145, 193, 508
FaiI YATR 3 cut(s) 143, 191, 506
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 141, 189, 504
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 9 cut(s) 214, 329, 336, 413, 416, 419, 422, 448, 483
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 9 cut(s) 214, 329, 336, 413, 416, 419, 422, 448, 483
FspBI CTAG 1 cut(s) 517
GlaI GCGC 3 cut(s) 212, 430, 481
GluI GCNGC 9 cut(s) 214, 329, 336, 413, 416, 419, 422, 448, 483
GsuI CTGGAG 1 cut(s) 517
HaeII RGCGCY 2 cut(s) 432, 483
HaeIII GGCC 4 cut(s) 116, 251, 270, 338
HhaI GCGC 3 cut(s) 213, 431, 482
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 3 cut(s) 145, 193, 508
Hin6I GCGC 3 cut(s) 211, 429, 480
HinP1I GCGC 3 cut(s) 211, 429, 480
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 146, 306
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 3 cut(s) 31, 169, 178
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 3 cut(s) 31, 169, 178
HpyAV CCTTC 2 cut(s) 12, 241
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 418, 421
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 3 cut(s) 145, 193, 508
HspAI GCGC 3 cut(s) 211, 429, 480
KasI GGCGCC 1 cut(s) 479
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 498
Lsp1109I GCAGC 6 cut(s) 225, 340, 424, 427, 430, 459
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 517
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 4 cut(s) 212, 214, 217, 377
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 1 cut(s) 70
Mly113I GGCGCC 1 cut(s) 480
MlyI GAGTC 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 164, 287, 496
MvaI CCWGG 3 cut(s) 164, 287, 496
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 61, 418, 421
NarI GGCGCC 1 cut(s) 480
NdeII GATC 1 cut(s) 123
NlaIII CATG 3 cut(s) 145, 193, 508
NlaIV GGNNCC 3 cut(s) 270, 271, 481
NmuCI GTSAC 1 cut(s) 256
NruI TCGCGA 1 cut(s) 38
PceI AGGCCT 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 369
PfeI GAWTC 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 9 cut(s) 215, 330, 337, 414, 417, 420, 423, 449, 484
PleI GAGTC 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 162, 285, 494
PspGI CCWGG 3 cut(s) 162, 285, 494
PspN4I GGNNCC 3 cut(s) 270, 271, 481
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 5 cut(s) 175, 268, 269, 289, 319
PspPPI RGGWCCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 173
RruI TCGCGA 1 cut(s) 38
SalI GTCGAC 1 cut(s) 167
SatI GCNGC 9 cut(s) 214, 329, 336, 413, 416, 419, 422, 448, 483
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 5 cut(s) 175, 268, 269, 289, 319
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 3 cut(s) 164, 287, 496
SduI GDGCHC 1 cut(s) 272
SetI ASST 8 cut(s) 45, 57, 138, 168, 177, 258, 294, 512
SfaNI GCATC 1 cut(s) 51
SfoI GGCGCC 1 cut(s) 481
SinI GGWCC 3 cut(s) 175, 289, 319
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 70
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 5 cut(s) 216, 322, 335, 422, 483
SspDI GGCGCC 1 cut(s) 479
SspMI CTAG 1 cut(s) 517
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 162, 285, 494
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 126, 168, 363
TaqII GACCGA 1 cut(s) 392
TasI AATT 1 cut(s) 70
TauI GCSGC 3 cut(s) 338, 424, 485
TfiI GAWTC 1 cut(s) 306
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 6 cut(s) 213, 328, 412, 415, 418, 447
Tsp45I GTSAC 1 cut(s) 256
Tth111I GACNNNGTC 1 cut(s) 173
VpaK11BI GGWCC 3 cut(s) 175, 289, 319
XagI CCTNNNNNAGG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.